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From: Adam T. <a-t...@st...> - 2007-02-06 18:38:42
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Hi Karol,
That fixed it.
However, using PyMOlyze this morning exposed another bug. ADF parsers
should have frags and fragnames attributes because ADF sometimes
alters the atom order so that there isn't a direct mapping between
fonames (ie. C1_3s) and atomcoords. Look in the svn log and ADF test
files for more details.
Adam
On Feb 6, 2007, at 6:24 AM, Karol Langner wrote:
> That would affect any logfile - I cut out the definition of nstep
> without
> checking if it is used (and forgot the tests don't check progress).
> Revision
> 510 is fixed for this.
>
> Thanks for the testing,
> Karol
>
> On Monday 05 of February 2007 19:07, Adam Tenderholt wrote:
>> Minor problem with Rev. 509 and ADF files:
>>>>> from cclib.parser import ccopen
>>>>> from cclib.progress import TextProgress
>>>>> progress = TextProgress()
>>>>> import logging
>>>>> parser = ccopen("dvb_sp.adfout", progress, logging.ERROR)
>>>>> parser.parse()
>>
>> [=========-] 97% Unsupported informationTraceback (most recent
>> call last):
>> File "<stdin>", line 1, in ?
>> File "/Library/Frameworks/Python.framework/Versions/2.4/lib/
>> python2.4/site-packages/cclib/parser/logfileparser.py", line 223, in
>> parse
>> self.progress.update(nstep, "Done")
>> NameError: global name 'nstep' is not defined
>>
>> I haven't checked if it affects other calculation files yet. Just
>> noticed it when I was using PyMOlyze this morning on an ADF
>> file... ;o)
>>
>> Adam
>
> --
> written by Karol Langner
> Tue Feb 6 15:22:22 CET 2007
>
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