From: <bao...@us...> - 2007-10-23 06:59:23
|
Revision: 772 http://cclib.svn.sourceforge.net/cclib/?rev=772&view=rev Author: baoilleach Date: 2007-10-22 23:59:17 -0700 (Mon, 22 Oct 2007) Log Message: ----------- Merged revisions 671-727,730-768,770-771 via svnmerge from https://cclib.svn.sourceforge.net/svnroot/cclib/branches/orca ........ r671 | atenderholt | 2007-07-09 23:24:16 +0100 (Mon, 09 Jul 2007) | 2 lines Begin work on a new parser/branch for ORCA by adding single point and optimization files ........ r672 | atenderholt | 2007-07-10 00:33:36 +0100 (Tue, 10 Jul 2007) | 2 lines LogfileParser sets some attributes (nmos and coreelectrons) without first checking if other attributes (nbasis and natom) exist first ........ r673 | atenderholt | 2007-07-10 01:40:33 +0100 (Tue, 10 Jul 2007) | 2 lines Orca parser: Parse geometry information; also update ccopen and __init__.py ........ r674 | atenderholt | 2007-07-10 04:01:44 +0100 (Tue, 10 Jul 2007) | 2 lines ORCA parser: handle orbital energies, and coords if not an optimization ........ r676 | atenderholt | 2007-07-10 20:24:27 +0100 (Tue, 10 Jul 2007) | 9 lines Orca parser: support the overlap matrix, which is only printed if the following is included: %output Print[ P_Overlap ] 1 end unsure of what the differences between the overlap and the one-electron integral matrices are ........ r677 | atenderholt | 2007-07-10 22:30:27 +0100 (Tue, 10 Jul 2007) | 2 lines ORCA Parser: minor bug fix when handling orbital energies of restricted calcs ........ r678 | atenderholt | 2007-07-10 22:59:21 +0100 (Tue, 10 Jul 2007) | 2 lines ORCA parser: Added support for parsing mocoeffs of restricted calcs, provided Print[ P_MOs ] 1 is added to the output section of an input file. ........ r679 | atenderholt | 2007-07-10 23:07:32 +0100 (Tue, 10 Jul 2007) | 2 lines Orca test files: Realized the restricted single point calc was actually unrestricted without mocoeffs/overlaps, so it was redone. Also adding unrestricted single point. ........ r680 | atenderholt | 2007-07-11 00:25:25 +0100 (Wed, 11 Jul 2007) | 2 lines Orca parser: minor code change to work with beta spins of mocoeffs ........ r681 | atenderholt | 2007-07-11 01:35:08 +0100 (Wed, 11 Jul 2007) | 2 lines ORCA parser: Added charge and multiplicity attributes; also parser geotargets and geovalues ........ r688 | atenderholt | 2007-07-11 19:53:45 +0100 (Wed, 11 Jul 2007) | 2 lines ORCA test files: added files for ir frequency calcs ........ r689 | atenderholt | 2007-07-11 19:54:11 +0100 (Wed, 11 Jul 2007) | 2 lines ORCA parser: Added code for handling ir frequencies and intensities; units of intensities might be incorrect for the cclib standard ........ r693 | atenderholt | 2007-07-12 19:51:42 +0100 (Thu, 12 Jul 2007) | 2 lines Orca parser: two bug fixes related to duplicated aonames and mocoeffs > 9.99999 ........ r694 | atenderholt | 2007-07-13 05:33:09 +0100 (Fri, 13 Jul 2007) | 2 lines ORCA data files: added raman calculations ........ r695 | atenderholt | 2007-07-13 05:33:33 +0100 (Fri, 13 Jul 2007) | 2 lines ORCA parser: added support for raman calculations ........ r707 | atenderholt | 2007-08-03 22:09:47 +0100 (Fri, 03 Aug 2007) | 2 lines ORCA data files: added MP2 calc for water and a TDDFT calc for dvb ........ r723 | baoilleach | 2007-08-13 08:00:07 +0100 (Mon, 13 Aug 2007) | 1 line Fixed small typo bug in testall.py. ........ r724 | baoilleach | 2007-08-13 08:00:34 +0100 (Mon, 13 Aug 2007) | 1 line Enabling main ORCA tests. ........ Modified Paths: -------------- trunk/src/cclib/parser/__init__.py trunk/src/cclib/parser/logfileparser.py trunk/src/cclib/parser/utils.py trunk/test/testGeoOpt.py trunk/test/testSP.py trunk/test/testSPun.py trunk/test/testTD.py trunk/test/testall.py trunk/test/testdata trunk/test/testvib.py Added Paths: ----------- trunk/data/ORCA/ trunk/data/ORCA/basicORCA2.6/ trunk/data/ORCA/basicORCA2.6/dvb_gopt.inp trunk/data/ORCA/basicORCA2.6/dvb_gopt.out trunk/data/ORCA/basicORCA2.6/dvb_ir.inp trunk/data/ORCA/basicORCA2.6/dvb_ir.out trunk/data/ORCA/basicORCA2.6/dvb_raman.inp trunk/data/ORCA/basicORCA2.6/dvb_raman.out trunk/data/ORCA/basicORCA2.6/dvb_sp.inp trunk/data/ORCA/basicORCA2.6/dvb_sp.out trunk/data/ORCA/basicORCA2.6/dvb_td.inp trunk/data/ORCA/basicORCA2.6/dvb_td.out trunk/data/ORCA/basicORCA2.6/dvb_un_sp.inp trunk/data/ORCA/basicORCA2.6/dvb_un_sp.out trunk/data/ORCA/basicORCA2.6/water_mp2.inp trunk/data/ORCA/basicORCA2.6/water_mp2.out trunk/src/cclib/parser/orcaparser.py Removed Paths: ------------- trunk/data/ORCA/basicORCA2.6/ trunk/data/ORCA/basicORCA2.6/dvb_gopt.inp trunk/data/ORCA/basicORCA2.6/dvb_gopt.out trunk/data/ORCA/basicORCA2.6/dvb_ir.inp trunk/data/ORCA/basicORCA2.6/dvb_ir.out trunk/data/ORCA/basicORCA2.6/dvb_raman.inp trunk/data/ORCA/basicORCA2.6/dvb_raman.out trunk/data/ORCA/basicORCA2.6/dvb_sp.inp trunk/data/ORCA/basicORCA2.6/dvb_sp.out trunk/data/ORCA/basicORCA2.6/dvb_td.inp trunk/data/ORCA/basicORCA2.6/dvb_td.out trunk/data/ORCA/basicORCA2.6/dvb_un_sp.inp trunk/data/ORCA/basicORCA2.6/dvb_un_sp.out trunk/data/ORCA/basicORCA2.6/water_mp2.inp trunk/data/ORCA/basicORCA2.6/water_mp2.out Property Changed: ---------------- trunk/ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <la...@us...> - 2007-10-29 10:51:53
|
Revision: 779 http://cclib.svn.sourceforge.net/cclib/?rev=779&view=rev Author: langner Date: 2007-10-29 03:51:48 -0700 (Mon, 29 Oct 2007) Log Message: ----------- Removed basicJaguar4.2 and basicJaguar6.0 from the trunk and added them as regressions in Jaguar/Jaguar4.2 and Jaguar/Jaguar6.0, respectively. Updated all test scripts and regressionfiles.txt. Note: these new regressions are parsed but currently not tests - this remains to be added. Also: regression tests cannot read from multiple files. Modified Paths: -------------- trunk/data/regressionfiles.txt trunk/test/regression.py trunk/test/testCI.py trunk/test/testGeoOpt.py trunk/test/testMP.py trunk/test/testSP.py trunk/test/testSPun.py trunk/test/testdata trunk/test/testvib.py Removed Paths: ------------- trunk/data/Jaguar/basicJaguar4.2/ trunk/data/Jaguar/basicJaguar6.0/ Property Changed: ---------------- trunk/data/Jaguar/ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <la...@us...> - 2007-10-29 12:58:45
|
Revision: 781 http://cclib.svn.sourceforge.net/cclib/?rev=781&view=rev Author: langner Date: 2007-10-29 05:58:34 -0700 (Mon, 29 Oct 2007) Log Message: ----------- Updating the ADF unittest files to ADF2006.01 - all tests finish the same (still 5 fails). An update to ASF2007.01 is also on the way. Modified Paths: -------------- trunk/data/ADF/basicADF2006.01/MoOCl4-sp.adfin trunk/data/ADF/basicADF2006.01/MoOCl4-sp.adfout trunk/data/ADF/basicADF2006.01/NH3.adfin trunk/data/ADF/basicADF2006.01/NH3.adfout trunk/data/ADF/basicADF2006.01/dvb_gopt.adfout trunk/data/ADF/basicADF2006.01/dvb_gopt_b.adfout trunk/data/ADF/basicADF2006.01/dvb_ir.adfout trunk/data/ADF/basicADF2006.01/dvb_sp.adfout trunk/data/ADF/basicADF2006.01/dvb_sp_b.adfin trunk/data/ADF/basicADF2006.01/dvb_sp_b.adfout trunk/data/ADF/basicADF2006.01/dvb_sp_c.adfin trunk/data/ADF/basicADF2006.01/dvb_sp_c.adfout trunk/data/ADF/basicADF2006.01/dvb_sp_d.adfout trunk/data/ADF/basicADF2006.01/dvb_un_sp.adfout trunk/data/ADF/basicADF2006.01/dvb_un_sp_c.adfout trunk/data/ADF/basicADF2006.01/mo_sp.adfin trunk/data/ADF/basicADF2006.01/mo_sp.adfout trunk/data/regressionfiles.txt trunk/test/regression.py trunk/test/testdata Added Paths: ----------- trunk/data/ADF/basicADF2006.01/ Removed Paths: ------------- trunk/data/ADF/basicADF2004.01/ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <la...@us...> - 2007-10-30 16:28:54
|
Revision: 782 http://cclib.svn.sourceforge.net/cclib/?rev=782&view=rev Author: langner Date: 2007-10-30 09:28:46 -0700 (Tue, 30 Oct 2007) Log Message: ----------- Bumped basicADF2006.01 tests up to basicADF2007.01, leaving one 2006.01 test (gopt) as a regression. Test results did not change. Modified Paths: -------------- trunk/data/ADF/basicADF2007.01/MoOCl4-sp.adfin trunk/data/ADF/basicADF2007.01/MoOCl4-sp.adfout trunk/data/ADF/basicADF2007.01/NH3.adfin trunk/data/ADF/basicADF2007.01/NH3.adfout trunk/data/ADF/basicADF2007.01/dvb_gopt.adfout trunk/data/ADF/basicADF2007.01/dvb_gopt_b.adfout trunk/data/ADF/basicADF2007.01/dvb_ir.adfout trunk/data/ADF/basicADF2007.01/dvb_sp.adfout trunk/data/ADF/basicADF2007.01/dvb_sp_b.adfin trunk/data/ADF/basicADF2007.01/dvb_sp_b.adfout trunk/data/ADF/basicADF2007.01/dvb_sp_c.adfin trunk/data/ADF/basicADF2007.01/dvb_sp_c.adfout trunk/data/ADF/basicADF2007.01/dvb_sp_d.adfout trunk/data/ADF/basicADF2007.01/dvb_un_sp.adfout trunk/data/ADF/basicADF2007.01/dvb_un_sp_c.adfout trunk/data/ADF/basicADF2007.01/mo_sp.adfin trunk/data/ADF/basicADF2007.01/mo_sp.adfout trunk/data/regressionfiles.txt trunk/test/testall.py trunk/test/testdata Added Paths: ----------- trunk/data/ADF/basicADF2007.01/ Removed Paths: ------------- trunk/data/ADF/basicADF2006.01/ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <la...@us...> - 2007-11-05 14:43:22
|
Revision: 785 http://cclib.svn.sourceforge.net/cclib/?rev=785&view=rev Author: langner Date: 2007-11-05 06:42:58 -0800 (Mon, 05 Nov 2007) Log Message: ----------- Updated Jaguar test files to 7.0; rewrote fragments in parser concerning vibirs/vibdisps and moenergies/mosyms in order to parse output from all Jaguar versions correctly (regressions for 4.2, 6.0 and 6.5 now all parse OK). Modified Paths: -------------- trunk/data/Jaguar/basicJaguar7.0/dvb_gopt.in trunk/data/Jaguar/basicJaguar7.0/dvb_gopt.out trunk/data/Jaguar/basicJaguar7.0/dvb_gopt_b.in trunk/data/Jaguar/basicJaguar7.0/dvb_gopt_b.out trunk/data/Jaguar/basicJaguar7.0/dvb_ir.in trunk/data/Jaguar/basicJaguar7.0/dvb_ir.out trunk/data/Jaguar/basicJaguar7.0/dvb_sp.in trunk/data/Jaguar/basicJaguar7.0/dvb_sp.out trunk/data/Jaguar/basicJaguar7.0/dvb_sp_b.in trunk/data/Jaguar/basicJaguar7.0/dvb_sp_b.out trunk/data/Jaguar/basicJaguar7.0/dvb_un_sp.in trunk/data/Jaguar/basicJaguar7.0/dvb_un_sp.out trunk/data/Jaguar/basicJaguar7.0/water_cis.out trunk/data/Jaguar/basicJaguar7.0/water_lmp2.out trunk/data/regressionfiles.txt trunk/src/cclib/parser/jaguarparser.py trunk/test/regression.py trunk/test/testall.py trunk/test/testdata Added Paths: ----------- trunk/data/Jaguar/basicJaguar7.0/ Removed Paths: ------------- trunk/data/Jaguar/basicJaguar6.5/ Property Changed: ---------------- trunk/data/Jaguar/ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <la...@us...> - 2007-11-05 19:04:29
|
Revision: 786 http://cclib.svn.sourceforge.net/cclib/?rev=786&view=rev Author: langner Date: 2007-11-05 11:04:21 -0800 (Mon, 05 Nov 2007) Log Message: ----------- Force ADF parser to parse scfenergies for SP calculations from Total Bonding decomposition output (I don't think ADF prints it before that... if it does, tell me where...); pass test for atombasis since th ADF parser does not parse this yet. Modified Paths: -------------- trunk/src/cclib/parser/adfparser.py trunk/test/testGeoOpt.py trunk/test/testSP.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <la...@us...> - 2007-11-05 22:32:53
|
Revision: 789 http://cclib.svn.sourceforge.net/cclib/?rev=789&view=rev Author: langner Date: 2007-11-05 14:32:50 -0800 (Mon, 05 Nov 2007) Log Message: ----------- ORCA: quick hacks to parser for atombasis, scfenergies, scftargets and scfvalues - not necessarily reliable or pretty, but enough for testSP; modified basisdict and b3lyp_energy for OrcaSPTest since the test was done for 3-21G (should be rerun in STO-3G for consistency); updated setup.py so basicORCA data files are installed along with cclib. Modified Paths: -------------- trunk/setup.py trunk/src/cclib/parser/orcaparser.py trunk/test/testSP.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2007-11-06 10:13:01
|
Revision: 791 http://cclib.svn.sourceforge.net/cclib/?rev=791&view=rev Author: baoilleach Date: 2007-11-06 02:12:51 -0800 (Tue, 06 Nov 2007) Log Message: ----------- Merged revisions 783 via svnmerge from https://cclib.svn.sourceforge.net/svnroot/cclib/branches/cclib-0.8 ........ r783 | baoilleach | 2007-10-31 13:12:43 +0000 (Wed, 31 Oct 2007) | 1 line Fixed bug parsing C_bigmult.log. Added regression test. ........ Modified Paths: -------------- trunk/data/regressionfiles.txt trunk/src/cclib/parser/gaussianparser.py trunk/test/regression.py Property Changed: ---------------- trunk/ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2007-11-07 16:24:02
|
Revision: 794 http://cclib.svn.sourceforge.net/cclib/?rev=794&view=rev Author: baoilleach Date: 2007-11-07 08:23:58 -0800 (Wed, 07 Nov 2007) Log Message: ----------- GAMESS: Extraction of etoscs enabled for basicPCGAMESS/dvb_td.out (I added a regression test). I still have one test file (supplied by a user) to sort out... Modified Paths: -------------- trunk/src/cclib/parser/gamessparser.py trunk/test/regression.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2007-11-08 09:34:14
|
Revision: 795 http://cclib.svn.sourceforge.net/cclib/?rev=795&view=rev Author: baoilleach Date: 2007-11-08 01:34:09 -0800 (Thu, 08 Nov 2007) Log Message: ----------- GAMESS US: Added a TD-DFT calculation, and the code the parse it. PC-GAMESS is increasingly becoming a fork. Modified Paths: -------------- trunk/src/cclib/parser/gamessparser.py Added Paths: ----------- trunk/data/GAMESS/basicGAMESS-US/dvb_td.inp trunk/data/GAMESS/basicGAMESS-US/dvb_td.out This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2007-11-14 13:57:12
|
Revision: 796 http://cclib.svn.sourceforge.net/cclib/?rev=796&view=rev Author: baoilleach Date: 2007-11-14 05:57:02 -0800 (Wed, 14 Nov 2007) Log Message: ----------- TD-DFT tightening up: tests for values for etoscs, etenergies and etsecs. Need to discuss this on list as it affects CI also... Modified Paths: -------------- trunk/src/cclib/parser/gamessparser.py trunk/src/cclib/parser/gaussianparser.py trunk/test/testTD.py trunk/test/testall.py trunk/test/testdata This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2007-11-16 17:22:22
|
Revision: 797 http://cclib.svn.sourceforge.net/cclib/?rev=797&view=rev Author: baoilleach Date: 2007-11-16 09:22:15 -0800 (Fri, 16 Nov 2007) Log Message: ----------- More TD-DFT related commits including some datafiles for GAMESS for triplet excitations. Modified Paths: -------------- trunk/src/cclib/parser/gamessparser.py trunk/test/testTD.py trunk/test/testdata Added Paths: ----------- trunk/data/GAMESS/basicGAMESS-US/dvb_td_trplet.inp trunk/data/GAMESS/basicGAMESS-US/dvb_td_trplet.out This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <la...@us...> - 2007-11-19 13:24:25
|
Revision: 800 http://cclib.svn.sourceforge.net/cclib/?rev=800&view=rev Author: langner Date: 2007-11-19 05:24:20 -0800 (Mon, 19 Nov 2007) Log Message: ----------- Added support for python-cjson and python-json alongside simpjejson as alternatives, with any of these modules loaded dynamically upon read/write (see load_json in data.py). Added short comment about JSON to INSTALL. Modified Paths: -------------- trunk/INSTALL trunk/src/cclib/data.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <la...@us...> - 2007-11-19 18:07:20
|
Revision: 801 http://cclib.svn.sourceforge.net/cclib/?rev=801&view=rev Author: langner Date: 2007-11-19 10:07:12 -0800 (Mon, 19 Nov 2007) Log Message: ----------- Removed all read/write function and methods from cclibData - refer to "[cclib-devel] Further JSON support" thread for rationale. Modified Paths: -------------- trunk/INSTALL trunk/src/cclib/data.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <ate...@us...> - 2008-05-14 00:37:45
|
Revision: 812 http://cclib.svn.sourceforge.net/cclib/?rev=812&view=rev Author: atenderholt Date: 2008-05-13 17:37:41 -0700 (Tue, 13 May 2008) Log Message: ----------- ADF parser: fixed a bug that didn't correctly determine symmetry labels for an unrestricted, d3h calculation (regression file WH6-opt.adfout) Modified Paths: -------------- trunk/data/regressionfiles.txt trunk/src/cclib/parser/adfparser.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2008-06-15 12:02:20
|
Revision: 815 http://cclib.svn.sourceforge.net/cclib/?rev=815&view=rev Author: baoilleach Date: 2008-06-15 05:02:08 -0700 (Sun, 15 Jun 2008) Log Message: ----------- etsec, CI and Jaguar: Updated Jaguar parser to extract the correct etsecs (follow on from etsec work around Nov 11 2007). Updated testCI to handle the new values. Modified Paths: -------------- trunk/src/cclib/parser/jaguarparser.py trunk/test/testCI.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2008-06-15 12:53:54
|
Revision: 817 http://cclib.svn.sourceforge.net/cclib/?rev=817&view=rev Author: baoilleach Date: 2008-06-15 05:53:52 -0700 (Sun, 15 Jun 2008) Log Message: ----------- Getting ready for release branch of cclib 0.9 Modified Paths: -------------- trunk/ANNOUNCE trunk/CHANGELOG trunk/setup.py trunk/src/cclib/__init__.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2006-04-03 15:01:56
|
Revision: 47 Author: baoilleach Date: 2006-04-03 08:01:48 -0700 (Mon, 03 Apr 2006) ViewCVS: http://svn.sourceforge.net/cclib/?rev=47&view=rev Log Message: ----------- Adding some documentation for developers/users regarding SCF- and geo-targets. Added Paths: ----------- trunk/docs/ trunk/docs/targets.txt Added: trunk/docs/targets.txt =================================================================== --- trunk/docs/targets.txt (rev 0) +++ trunk/docs/targets.txt 2006-04-03 15:01:48 UTC (rev 47) @@ -0,0 +1,19 @@ +targets.txt: information on the scftargets and geotargets attributes of different parsers. + + + +scftargets + Gaussian GAMESS ADF +delta density X (this may be the same as rms density) +rms density X +max density X +delta energy X + + + +geotargets + Gaussian GAMESS ADF +max gradient X X (Gaussian uses the terms max force and rms force) +rms gradient X X +max displacement X +rms displacement X This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2006-04-07 13:21:14
|
Revision: 58 Author: baoilleach Date: 2006-04-07 06:20:58 -0700 (Fri, 07 Apr 2006) ViewCVS: http://svn.sourceforge.net/cclib/?rev=58&view=rev Log Message: ----------- Adding standard files...although not with much content. These are added to increase our cheesecake index value (pycheesecake.org). Added Paths: ----------- trunk/ANNOUNCE trunk/CHANGELOG trunk/INSTALL trunk/LICENSE trunk/MANIFEST trunk/README trunk/THANKS Added: trunk/ANNOUNCE =================================================================== Added: trunk/CHANGELOG =================================================================== Added: trunk/INSTALL =================================================================== --- trunk/INSTALL (rev 0) +++ trunk/INSTALL 2006-04-07 13:20:58 UTC (rev 58) @@ -0,0 +1,11 @@ +How to install cclib + +Requirements: + +cclib requires the Numeric extension for python. (Other variants, e.g. scipy, numarray, numpy, should also work but you will have to do some manual replacement of the appropriate references to Numeric) + +Installation: + +Type (as root): + python setup.py install + Added: trunk/LICENSE =================================================================== --- trunk/LICENSE (rev 0) +++ trunk/LICENSE 2006-04-07 13:20:58 UTC (rev 58) @@ -0,0 +1,280 @@ + GNU GENERAL PUBLIC LICENSE + Version 2, June 1991 + + Copyright (C) 1989, 1991 Free Software Foundation, Inc. + 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The licenses for most software are designed to take away your +freedom to share and change it. By contrast, the GNU General Public +License is intended to guarantee your freedom to share and change free +software--to make sure the software is free for all its users. This +General Public License applies to most of the Free Software +Foundation's software and to any other program whose authors commit to +using it. (Some other Free Software Foundation software is covered by +the GNU Library General Public License instead.) You can apply it to +your programs, too. + + When we speak of free software, we are referring to freedom, not +price. Our General Public Licenses are designed to make sure that you +have the freedom to distribute copies of free software (and charge for +this service if you wish), that you receive source code or can get it +if you want it, that you can change the software or use pieces of it +in new free programs; and that you know you can do these things. + + To protect your rights, we need to make restrictions that forbid +anyone to deny you these rights or to ask you to surrender the rights. +These restrictions translate to certain responsibilities for you if you +distribute copies of the software, or if you modify it. + + For example, if you distribute copies of such a program, whether +gratis or for a fee, you must give the recipients all the rights that +you have. You must make sure that they, too, receive or can get the +source code. And you must show them these terms so they know their +rights. + + We protect your rights with two steps: (1) copyright the software, and +(2) offer you this license which gives you legal permission to copy, +distribute and/or modify the software. + + Also, for each author's protection and ours, we want to make certain +that everyone understands that there is no warranty for this free +software. If the software is modified by someone else and passed on, we +want its recipients to know that what they have is not the original, so +that any problems introduced by others will not reflect on the original +authors' reputations. + + Finally, any free program is threatened constantly by software +patents. We wish to avoid the danger that redistributors of a free +program will individually obtain patent licenses, in effect making the +program proprietary. To prevent this, we have made it clear that any +patent must be licensed for everyone's free use or not licensed at all. + + The precise terms and conditions for copying, distribution and +modification follow. + + GNU GENERAL PUBLIC LICENSE + TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION + + 0. This License applies to any program or other work which contains +a notice placed by the copyright holder saying it may be distributed +under the terms of this General Public License. The "Program", below, +refers to any such program or work, and a "work based on the Program" +means either the Program or any derivative work under copyright law: +that is to say, a work containing the Program or a portion of it, +either verbatim or with modifications and/or translated into another +language. (Hereinafter, translation is included without limitation in +the term "modification".) Each licensee is addressed as "you". + +Activities other than copying, distribution and modification are not +covered by this License; they are outside its scope. The act of +running the Program is not restricted, and the output from the Program +is covered only if its contents constitute a work based on the +Program (independent of having been made by running the Program). +Whether that is true depends on what the Program does. + + 1. You may copy and distribute verbatim copies of the Program's +source code as you receive it, in any medium, provided that you +conspicuously and appropriately publish on each copy an appropriate +copyright notice and disclaimer of warranty; keep intact all the +notices that refer to this License and to the absence of any warranty; +and give any other recipients of the Program a copy of this License +along with the Program. + +You may charge a fee for the physical act of transferring a copy, and +you may at your option offer warranty protection in exchange for a fee. + + 2. You may modify your copy or copies of the Program or any portion +of it, thus forming a work based on the Program, and copy and +distribute such modifications or work under the terms of Section 1 +above, provided that you also meet all of these conditions: + + a) You must cause the modified files to carry prominent notices + stating that you changed the files and the date of any change. + + b) You must cause any work that you distribute or publish, that in + whole or in part contains or is derived from the Program or any + part thereof, to be licensed as a whole at no charge to all third + parties under the terms of this License. + + c) If the modified program normally reads commands interactively + when run, you must cause it, when started running for such + interactive use in the most ordinary way, to print or display an + announcement including an appropriate copyright notice and a + notice that there is no warranty (or else, saying that you provide + a warranty) and that users may redistribute the program under + these conditions, and telling the user how to view a copy of this + License. (Exception: if the Program itself is interactive but + does not normally print such an announcement, your work based on + the Program is not required to print an announcement.) + +These requirements apply to the modified work as a whole. If +identifiable sections of that work are not derived from the Program, +and can be reasonably considered independent and separate works in +themselves, then this License, and its terms, do not apply to those +sections when you distribute them as separate works. But when you +distribute the same sections as part of a whole which is a work based +on the Program, the distribution of the whole must be on the terms of +this License, whose permissions for other licensees extend to the +entire whole, and thus to each and every part regardless of who wrote it. + +Thus, it is not the intent of this section to claim rights or contest +your rights to work written entirely by you; rather, the intent is to +exercise the right to control the distribution of derivative or +collective works based on the Program. + +In addition, mere aggregation of another work not based on the Program +with the Program (or with a work based on the Program) on a volume of +a storage or distribution medium does not bring the other work under +the scope of this License. + + 3. You may copy and distribute the Program (or a work based on it, +under Section 2) in object code or executable form under the terms of +Sections 1 and 2 above provided that you also do one of the following: + + a) Accompany it with the complete corresponding machine-readable + source code, which must be distributed under the terms of Sections + 1 and 2 above on a medium customarily used for software interchange; or, + + b) Accompany it with a written offer, valid for at least three + years, to give any third party, for a charge no more than your + cost of physically performing source distribution, a complete + machine-readable copy of the corresponding source code, to be + distributed under the terms of Sections 1 and 2 above on a medium + customarily used for software interchange; or, + + c) Accompany it with the information you received as to the offer + to distribute corresponding source code. (This alternative is + allowed only for noncommercial distribution and only if you + received the program in object code or executable form with such + an offer, in accord with Subsection b above.) + +The source code for a work means the preferred form of the work for +making modifications to it. For an executable work, complete source +code means all the source code for all modules it contains, plus any +associated interface definition files, plus the scripts used to +control compilation and installation of the executable. However, as a +special exception, the source code distributed need not include +anything that is normally distributed (in either source or binary +form) with the major components (compiler, kernel, and so on) of the +operating system on which the executable runs, unless that component +itself accompanies the executable. + +If distribution of executable or object code is made by offering +access to copy from a designated place, then offering equivalent +access to copy the source code from the same place counts as +distribution of the source code, even though third parties are not +compelled to copy the source along with the object code. + + 4. You may not copy, modify, sublicense, or distribute the Program +except as expressly provided under this License. Any attempt +otherwise to copy, modify, sublicense or distribute the Program is +void, and will automatically terminate your rights under this License. +However, parties who have received copies, or rights, from you under +this License will not have their licenses terminated so long as such +parties remain in full compliance. + + 5. You are not required to accept this License, since you have not +signed it. However, nothing else grants you permission to modify or +distribute the Program or its derivative works. These actions are +prohibited by law if you do not accept this License. Therefore, by +modifying or distributing the Program (or any work based on the +Program), you indicate your acceptance of this License to do so, and +all its terms and conditions for copying, distributing or modifying +the Program or works based on it. + + 6. Each time you redistribute the Program (or any work based on the +Program), the recipient automatically receives a license from the +original licensor to copy, distribute or modify the Program subject to +these terms and conditions. You may not impose any further +restrictions on the recipients' exercise of the rights granted herein. +You are not responsible for enforcing compliance by third parties to +this License. + + 7. If, as a consequence of a court judgment or allegation of patent +infringement or for any other reason (not limited to patent issues), +conditions are imposed on you (whether by court order, agreement or +otherwise) that contradict the conditions of this License, they do not +excuse you from the conditions of this License. If you cannot +distribute so as to satisfy simultaneously your obligations under this +License and any other pertinent obligations, then as a consequence you +may not distribute the Program at all. For example, if a patent +license would not permit royalty-free redistribution of the Program by +all those who receive copies directly or indirectly through you, then +the only way you could satisfy both it and this License would be to +refrain entirely from distribution of the Program. + +If any portion of this section is held invalid or unenforceable under +any particular circumstance, the balance of the section is intended to +apply and the section as a whole is intended to apply in other +circumstances. + +It is not the purpose of this section to induce you to infringe any +patents or other property right claims or to contest validity of any +such claims; this section has the sole purpose of protecting the +integrity of the free software distribution system, which is +implemented by public license practices. Many people have made +generous contributions to the wide range of software distributed +through that system in reliance on consistent application of that +system; it is up to the author/donor to decide if he or she is willing +to distribute software through any other system and a licensee cannot +impose that choice. + +This section is intended to make thoroughly clear what is believed to +be a consequence of the rest of this License. + + 8. If the distribution and/or use of the Program is restricted in +certain countries either by patents or by copyrighted interfaces, the +original copyright holder who places the Program under this License +may add an explicit geographical distribution limitation excluding +those countries, so that distribution is permitted only in or among +countries not thus excluded. In such case, this License incorporates +the limitation as if written in the body of this License. + + 9. The Free Software Foundation may publish revised and/or new versions +of the General Public License from time to time. Such new versions will +be similar in spirit to the present version, but may differ in detail to +address new problems or concerns. + +Each version is given a distinguishing version number. If the Program +specifies a version number of this License which applies to it and "any +later version", you have the option of following the terms and conditions +either of that version or of any later version published by the Free +Software Foundation. If the Program does not specify a version number of +this License, you may choose any version ever published by the Free Software +Foundation. + + 10. If you wish to incorporate parts of the Program into other free +programs whose distribution conditions are different, write to the author +to ask for permission. For software which is copyrighted by the Free +Software Foundation, write to the Free Software Foundation; we sometimes +make exceptions for this. Our decision will be guided by the two goals +of preserving the free status of all derivatives of our free software and +of promoting the sharing and reuse of software generally. + + NO WARRANTY + + 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY +FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN +OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES +PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED +OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS +TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE +PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, +REPAIR OR CORRECTION. + + 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING +WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR +REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, +INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING +OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED +TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY +YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER +PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE +POSSIBILITY OF SUCH DAMAGES. + + END OF TERMS AND CONDITIONS Added: trunk/MANIFEST =================================================================== --- trunk/MANIFEST (rev 0) +++ trunk/MANIFEST 2006-04-07 13:20:58 UTC (rev 58) @@ -0,0 +1,15 @@ +THANKS +README +INSTALL +ANNOUNCE +CHANGELOG +LICENSE +setup.py +src/cclib/__init__.py +src/cclib/parser/__init__.py +src/cclib/parser/adfparser.py +src/cclib/parser/g03parser.py +src/cclib/parser/gamessparser.py +src/cclib/parser/logfileparser.py +src/cclib/parser/textprogress.py +test/testall.py Added: trunk/README =================================================================== --- trunk/README (rev 0) +++ trunk/README 2006-04-07 13:20:58 UTC (rev 58) @@ -0,0 +1 @@ +cclib is a parser for outputfiles of computational chemistry packages. Added: trunk/THANKS =================================================================== --- trunk/THANKS (rev 0) +++ trunk/THANKS 2006-04-07 13:20:58 UTC (rev 58) @@ -0,0 +1,3 @@ +The developers of cclib would like the thank the following: + +Rob Paton -- for creating and running Jaguar test jobs This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bou...@us...> - 2006-09-25 12:06:12
|
Revision: 344 http://svn.sourceforge.net/cclib/?rev=344&view=rev Author: bounouar Date: 2006-09-25 05:05:48 -0700 (Mon, 25 Sep 2006) Log Message: ----------- Added molpro parser, and dvb geometry and freq outputs Modified Paths: -------------- trunk/MANIFEST trunk/src/cclib/parser/__init__.py trunk/src/cclib/parser/logfileparser.py trunk/src/cclib/parser/utils.py trunk/src/scripts/ccget Added Paths: ----------- trunk/data/Molpro/ trunk/data/Molpro/basicMolpro2006/ trunk/data/Molpro/basicMolpro2006/dvb_gopt.com trunk/data/Molpro/basicMolpro2006/dvb_gopt.log trunk/data/Molpro/basicMolpro2006/dvb_gopt.molden trunk/data/Molpro/basicMolpro2006/dvb_gopt.out trunk/data/Molpro/basicMolpro2006/dvb_ir.com trunk/data/Molpro/basicMolpro2006/dvb_ir.log trunk/data/Molpro/basicMolpro2006/dvb_ir.molden trunk/data/Molpro/basicMolpro2006/dvb_ir.out trunk/src/cclib/parser/molproparser.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2006-11-03 16:23:00
|
Revision: 402 http://svn.sourceforge.net/cclib/?rev=402&view=rev Author: baoilleach Date: 2006-11-03 08:22:42 -0800 (Fri, 03 Nov 2006) Log Message: ----------- New features: Handling of zipped, bzipped2 and gzipeed files. I've merged the handlezip branch onto HEAD (note to self: need to delete the branch). I've zipped up all of the regression files on the web server in various ways, and updated the regression tests to handle them. Please delete your current regression files, and rerun wget.sh. Modified Paths: -------------- trunk/data/regressionfiles.txt trunk/src/cclib/parser/adfparser.py trunk/src/cclib/parser/gamessparser.py trunk/src/cclib/parser/gamessukparser.py trunk/src/cclib/parser/gaussianparser.py trunk/src/cclib/parser/jaguarparser.py trunk/src/cclib/parser/molproparser.py trunk/src/cclib/parser/utils.py trunk/test/regression.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2006-11-29 19:41:34
|
Revision: 429 http://svn.sourceforge.net/cclib/?rev=429&view=rev Author: baoilleach Date: 2006-11-29 11:41:30 -0800 (Wed, 29 Nov 2006) Log Message: ----------- API change: Renamed vibcarts to vibdisps. Modified Paths: -------------- trunk/src/cclib/parser/gamessparser.py trunk/src/cclib/parser/gamessukparser.py trunk/src/cclib/parser/gaussianparser.py trunk/src/scripts/ccget trunk/test/testvib.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2006-12-10 18:37:50
|
Revision: 446 http://svn.sourceforge.net/cclib/?rev=446&view=rev Author: baoilleach Date: 2006-12-10 10:37:45 -0800 (Sun, 10 Dec 2006) Log Message: ----------- Bug fix ADF atomnos: atomnos was a list, not an array. Have also added a test to testGeoOpt.py for this. Modified Paths: -------------- trunk/src/cclib/parser/adfparser.py trunk/test/testGeoOpt.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <bao...@us...> - 2007-02-09 19:45:15
|
Revision: 513 http://svn.sourceforge.net/cclib/?rev=513&view=rev Author: baoilleach Date: 2007-02-09 11:45:10 -0800 (Fri, 09 Feb 2007) Log Message: ----------- Wrote gbasis for Jaguar. Looks fine, but after adding some more tests, there are several failures for different parsers, so need to look into these. Modified Paths: -------------- trunk/src/cclib/parser/jaguarparser.py trunk/test/testBasis.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <la...@us...> - 2007-03-01 21:22:26
|
Revision: 563 http://svn.sourceforge.net/cclib/?rev=563&view=rev Author: langner Date: 2007-03-01 13:22:18 -0800 (Thu, 01 Mar 2007) Log Message: ----------- Code for parsing MP3&4 energies from PC-GAMESS; separation of MP4(SDQ) and MP4(SDTQ) in testMP. Note: include in 0.7 release. Modified Paths: -------------- trunk/src/cclib/parser/gamessparser.py trunk/test/testMP.py This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |