From: Noel O'B. <bao...@gm...> - 2008-07-25 14:27:11
|
2008/7/25 Bill Gunn <bil...@gm...>: > I William Gunn am the copyright owner of the GAMESS output file > zolm_dft3a.log and I place it in the public domain. > > If you need anything more than this, filling a standard form etc, let me > know. > > > On 25/07/2008, Noel O'Boyle <bao...@gm...> wrote: >> >> Hello Bill, >> >> The cclib parser appears to be having problems, but I can see how to >> fix it. However, for practical reasons, we (at cclib) have a policy of >> only fixing bugs for cases where we have a public domain log file. >> So...I would appreciate if you could either (a) place the file you >> sent me into the public domain, or (b) send me an alternative public >> domain log file exhibiting the problem. >> >> It should be possible also to work around it in the short term. I'll >> need to think about this a bit first. >> >> Regards, >> Noel >> >> 2008/7/25 Bill Gunn <bil...@gm...>: >> > Noel, >> > >> > Here it is. >> > >> > 2008/7/24 Noel O'Boyle <bao...@gm...>: >> >> >> >> Hello Bill, >> >> >> >> Can you zip the output file and send it to me directly at this address? >> >> >> >> Noel >> >> >> >> 2008/7/24 Bill Gunn <bil...@gm...>: >> >> > A GAMESS output log file with HESSIAN enabled that I generated for a >> >> > medium >> >> > sized organic molecule fails to load in GaussSum. The error reported >> >> > is >> >> > "cclib has problems parsing...". >> >> > >> >> > The file loads both MO's and frequencies in wxMacMolPlt and >> >> > Jmol. The >> >> > output from a similar input deck with $DATA for ethene was handled >> >> > without >> >> > problem by GaussSum. So it seems like the file is OK. >> >> > >> >> > Your mailer baulked at the 2.4 MB log file I attempted to send you as >> >> > an >> >> > attachment so below is the text of the input deck to give you an idea >> >> > of >> >> > the >> >> > size of the molecule I was running >> >> > >> >> > ! File created by the GAMESS Input Deck Generator Plugin for >> >> > Avogadro >> >> > ! Edited by Bill >> >> > $BASIS GBASIS=N31 NGAUSS=6 $END >> >> > $GUESS=MOREAD $END >> >> > $CONTRL SCFTYP=RHF RUNTYP=HESSIAN DFTTYP=BLYP $END >> >> > $VIB $END >> >> > $SYSTEM TIMLIM=14400 MEMORY=20000000 $END >> >> > $SCF DIRSCF=.TRUE. $END >> >> > $FORCE METHOD=SEMINUM VIBSIZ=0.010000 VIBANL=.TRUE. $END >> >> > >> >> > >> >> > $DATA >> >> > >> >> > C1 >> >> > C 6.0 -2.14672 2.26626 -2.95665 >> >> > N 7.0 -0.80323 1.86578 -3.43302 >> >> > C 6.0 0.10561 3.02777 -3.57695 >> >> > C 6.0 -0.17129 0.79907 -2.60156 >> >> > C 6.0 -0.98629 -0.49296 -2.58115 >> >> > C 6.0 -0.19359 -1.57992 -1.96583 >> >> > C 6.0 0.52687 -2.55972 -2.62045 >> >> > N 7.0 1.09342 -3.42775 -1.66150 >> >> > C 6.0 0.80568 -2.92341 -0.37771 >> >> > C 6.0 -0.03095 -1.78875 -0.54829 >> >> > C 6.0 -0.49899 -1.09423 0.57313 >> >> > C 6.0 -0.11170 -1.52690 1.82946 >> >> > C 6.0 0.71583 -2.66412 1.98378 >> >> > C 6.0 1.18495 -3.37020 0.89684 >> >> > C 6.0 -0.53652 -0.76636 3.04632 >> >> > C 6.0 0.60786 0.11462 3.55021 >> >> > C 6.0 0.25212 0.92000 4.81852 >> >> > O 8.0 0.67628 2.27256 4.60055 >> >> > C 6.0 1.12613 2.41547 3.31026 >> >> > O 8.0 1.58568 3.47760 2.95026 >> >> > N 7.0 0.93858 1.20654 2.59114 >> >> > H 1.0 -2.49801 3.13859 -3.52289 >> >> > H 1.0 -2.84890 1.44146 -3.13704 >> >> > H 1.0 -2.17688 2.51812 -1.88543 >> >> > H 1.0 0.30566 3.54284 -2.62461 >> >> > H 1.0 -0.33529 3.75106 -4.27464 >> >> > H 1.0 1.06389 2.69147 -3.99448 >> >> > H 1.0 0.82674 0.59817 -3.04125 >> >> > H 1.0 0.00536 1.14725 -1.55956 >> >> > H 1.0 -1.91998 -0.35434 -1.99720 >> >> > H 1.0 -1.29785 -0.78003 -3.60409 >> >> > H 1.0 0.65853 -2.70597 -3.69358 >> >> > H 1.0 1.79592 -4.09423 -1.85071 >> >> > H 1.0 -1.14884 -0.22192 0.43848 >> >> > H 1.0 0.99105 -2.97835 2.99770 >> >> > H 1.0 1.84111 -4.23678 1.01943 >> >> > H 1.0 -0.82750 -1.47126 3.85118 >> >> > H 1.0 -1.44348 -0.16310 2.83554 >> >> > H 1.0 1.50561 -0.53193 3.72104 >> >> > H 1.0 -0.83023 0.94914 5.03269 >> >> > H 1.0 0.78018 0.57471 5.72077 >> >> > H 1.0 1.41321 1.01375 1.74127 >> >> > $END >> >> > >> >> > >> >> > >> >> > ------------------------------------------------------------------------- >> >> > This SF.Net email is sponsored by the Moblin Your Move Developer's >> >> > challenge >> >> > Build the coolest Linux based applications with Moblin SDK & win >> >> > great >> >> > prizes >> >> > Grand prize is a trip for two to an Open Source event anywhere in the >> >> > world >> >> > http://moblin-contest.org/redirect.php?banner_id=100&url=/ >> >> > _______________________________________________ >> >> > Gausssum-help mailing list >> >> > Gau...@li... >> >> > https://lists.sourceforge.net/lists/listinfo/gausssum-help >> >> > >> >> > >> > >> > > > |