Activity for CBMPy
-
Brett Olivier committed [r715]
resynch to git move
-
moving to git primary
-
continuing update to swiglpk
-
started rewrite of GLPK to take advantage of swiglpk
-
added new CBSolve module
-
line-ends and format fixes
-
synched to new git repo structure
-
cleanup src
-
cleanup src
-
continue implementing group pointers
-
-
CBMPy released /release/0.7/cbmpy-0.7.25-py3-none-any.whl
-
-
-
-
hacked some form of serialization support into new group structure that allows models to be serialized
-
first attempt at switching groups over to use weakrefs rather than references
-
cloneing and serialization of FluxBound classes using weakrefs for _parent links and also "new style" extended reactions now implemented.
-
trimmed oldsolver
-
tweaked new FluxBound
-
improved ReactionNew class and FluxBoundBase integration
-
version bump
-
added new reaction class that has integrated fluxbounds
-
Refactered FluxBoundBase and crreated tow subclasses FluxBoundLower and FluxBoundUpper
-
Adding new FluxBound class
-
tweaked docstring
-
extended docstring
-
fixed docstring
-
refactored addFluxBound 2X speedup using fbexists
-
added deleteCompartment function to Model
-
version bump
-
fixed bugs in internal __deleteGeneFromTree__ and added __pruneTree__ functionality to GPR
-
version update in setup
-
updated version
-
standardised use of setId across all model componenents
-
update model component constructors to check for a valid id
-
fixed setId function to deal with setting existing id
-
added getFluxesAssociatedWithCompartments function
-
py2 vs 3 again
-
added support for runtime model extension
-
first attempt at a model extension mechanism
-
added getXObjects to Model, removed boundary option from getSpecies and fixed bug in getGeneLabels substring search
-
put in place a workaround for the P3 utf-8 issue
-
resolving conflicts
-
resolving conflicts
-
fixed new changes for Py27
-
fixed bug where notes were not being added to reactions and rewrote note getters ands setters
-
Added getGPRassociationString to reaction
-
updated setup with new default model layout
-
removed unit tests from source
-
removed tests from source and refactored default models into CBDefaultModels.py
-
removed test module installation
-
Added automatic network update on if change in gene activity detected
-
Fixed some Python3 compatibility issues
-
fixed potential operator isssue in user constraints
-
refactor docs
-
-
-
-
-
-
updates to test code
-
testing new test code
-
fixed gpr import issue with fbcv1 files
-
updated year
-
version bump
-
version bump
-
added automatic file validation
-
fixed idless model error
-
Added mergeGroups function
-
took out unnecessary debug lp writer
-
tweaked cplex return status reporting
-
allow SBML export of models with incomplete GPR's
-
allow SBML export of models with incomplete GPR's
-
tweaked error message in setId
-
added getGPRIds() to model, new __checkId__() code optimized, all setId() methods now check for Id validity and raise a RuntimeWarning if not.
-
added user friendly loadModel() and saveModel() methods.
-
fix strange p3 behaviour
-
fixed for solver refactor
-
fixed W.G. corner case with GLPK
-
made the setChemFormula more intuitive
-
added protection from invalid empty GPR elements
-
Starting refactoring of solver modules
-
tweaked userconstraint importUserConstraints
-
added user constraint input/output and unit tests, including generic write tests
-
added user constraint import/export
-
sync
-
version set
-
setId does nothing if the old and new id are the same
-
updated buggy BiGG model without objective function
-
-
-
-
-
new version tag
-
tweaks for build system
-
0.7.19b
-
0.7.19
-
fixed GPRfromString bug
-
updated Python 3 compatibility
1 >
