Activity for TIES
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Michael Davis committed [r2512]
removed cuisearchservice, not used
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Known Bugs (FINAL)
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Oliver Hao committed [r2511]
fixed result tree not display issue by removing getOrDefault which is not supported by java 7
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fixed api function -- look up documents of a case set by caseset_ID
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added the missing jar
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export doc ids from caseset id in pitt network
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CaTIES_LuceneSearcher can be compiled into an executable jar to query the counts of terms in the indices
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speed up TIES search by removing unnecessary operations under public network
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libs for rest calls
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simple cui service
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added options for cui export, and external vocab lookup
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When creating tree view of reports, replaced isHonestBroker check with isUnderPrivateNetwork check.
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Reber posted a comment on discussion TIES Help / Support
SOLVED While cleaning up our file server of old files, I got to our De-ID Software download folder and noticed a huge difference in the file sizes in the new De-ID and the older version we originally had been using. De-ID 6.24.5.2 61M De-ID 6.26.2.1 19M I deleted the newer version and replaced it with th original and deidentifying is working . I will contact De-ID Corp about this discrepancy.
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Fixed the bug that same addendum report shows twice
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If it helps, I put wrapper in DEBUG mode. wrapper.log: DEBUG | wrapper | 2018/10/09 11:41:40 | Allocating a console for the service. DEBUG | wrapper | 2018/10/09 11:41:40 | Found console window. STATUS | wrapper | 2018/10/09 11:41:40 | --> Wrapper Started as Service STATUS | wrapper | 2018/10/09 11:41:40 | Java Service Wrapper Community Edition 32-bit 3.5.7 STATUS | wrapper | 2018/10/09 11:41:40 | Copyright (C) 1999-2010 Tanuki Software, Ltd. All Rights Reserved. STATUS | wrapper | 2018/10/09 11:41:40...
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fixed the bug of "report count not displaying when searching with identifier"
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Finally getting back to processing documents on the production server. I loaded a batch of documents via the "Delimited File Importer". Table ident_document shows them as "DEIDENTIFYING". I start up the DeID pipeline (We are using DeID Corp), the log showed a group of documents (100) being fetched, then immediately returns message "Invalid response from De-identifier. Exiting" Thinking maybe it was the documents loaded with the Delimited File Importer, I deleted those documents from ident_document...
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identified report unable to view. solved by switching the order of loading obj and loading idobj
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indexing no longer depend on the document types in caTIES.properties
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Enabled TIES to code and index document of different types
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new feature: allow addendum reports displayed as subtree in the query results tree
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fixed the bug "unable to save query" reported by upenn
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removed hub update from install
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removed check for HUB db from install
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Version 5.8
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TIES released /Installers/TIES v5.8.2 Installer/TIES_v5.8.2_Installer.zip
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fixed the installer option "install pipelines only"
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added try/catch to handle missing report date.
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v5.8.1 bug fix
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added the semantic type to concept search API
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v5.81, added new feature--HL7 document loading with multiple document types
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added semantic type
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Tagging version 5.8
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Tagging version 5.8
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added some logging statements
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removed space in cui header labels
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generate a unique cui list
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added a cui export for documents, and options
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fixed issue with api document search filter
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new endpoint for document filter search
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api update: increasted default limit from 50 to 200
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API update: set limit as an optional parameter and default=50
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enriched api query search filter function: enabled filtering by patient ids, doc ids or both
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added new feature for api: filter query results by patient_Id
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added code to update the caties.jar in the tomcatHub/webapp/ties, for vm update mainly
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Add group section to display order
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HL7 support for new section and document types
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HL7 Validator Controller
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HL7 Validator Controller
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The chart now displays the patient counts, rather than document totals. There are noted in the labels
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Chart regrouping
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hide buttons to move, copy reports and copy caseset
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updated to eclipse .classpath since removal of jar file
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disabled embedded database option, forces user to install mysql
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clean-up of jar files and code for auth test
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fixed bug to process data in PENDING status in the HL7_document table.
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fixed bug to process data in PENDING status in the HL7_document table.
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minor change to return an empty list array, instead of null, for zero returned results
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minor mods to install code to update caties.jar
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improved unsaved changes notification by adding 3 options: YES(save and proceed), NO(proceed) and Cancel(stay)
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changed HL7 pipeline to enable loading section types associated with different report type
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refactored doc api to use single method to preserve same return message
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changed api/ties/document/list to concise list of doc_id
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move exception to handle sectiontype object being null
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Disabled auto-saving in the annotation form. added a Save button to save the annotation form.
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Melissa Schwenk posted a comment on ticket #97
currently the totals in the charts are for documents this needs to count patients instead
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The content of the field that was filled earlier does not show up after adding a new field
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TIES Chart should count patients
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The content of the field that was filled earlier does not show up after adding a new field
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A TIES user contacted me this afternoon regarding an error trying to save a query. She ran a text query for: Urothelial carcinoma for Females <50 for all sections of the Penn Pathology reports. When trying to save the query, she gets the following error. I tried with my account and the same thing happens. I attached a screenshot of the error message as well as the java console log file. org.jdom.input.JDOMParseException: Error on line 15: The element type "valuedomain" must be terminated by the matching...
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We found repeated Accession Number from different data sources. When loading new HL7 file, the HL7 pipeline attempts to create duplicated entry if it detects existing same accession number in the database(column DOCUMENT_HL7). As a result the pipeline stopped due to cannot insert error. this turned out to be related to hidden unicode within some of the text reports. developed a method to strip these out.
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I have been creating new Tags in TIES for the last couple days. Today I went to test them (since I know you get the message that it takes time for the tags to work properly) and they are still not working. The older tags that we have work fine. fixed the tagging bug by changing the status of documents from idling to indexing New commit [r2440]
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5.7 install crashes due to conflicting jar files, opensaml-xx.jar removed new opensaml-xx.jar
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Adding display order for Group section will allow preferred ordering of certain groups to appear before other sections.
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for the configuration tab, none of these are displaying when clicked on. fixed this by resolving hl7 validator code issues
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Ticket moved from /p/caties/feature-requests/108/ Can't be converted: _milestone: v5.8
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Ticket moved from /p/caties/feature-requests/107/ Can't be converted: _milestone: v5.8
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Ticket moved from /p/caties/feature-requests/106/ Can't be converted: _milestone: v5.8
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Ticket moved from /p/caties/feature-requests/99/ Can't be converted: _milestone: v5.8
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Ticket moved from /p/caties/feature-requests/96/ Can't be converted: _milestone: v5.8
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Annotation forms fields on exports
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