Menu
▾
▴
byodyn-developers — This is a mailing list devoted to code development of ByoDyn
You can subscribe to this list here.
| 2007 |
Jan
|
Feb
|
Mar
|
Apr
|
May
|
Jun
(10) |
Jul
(4) |
Aug
(8) |
Sep
(8) |
Oct
(5) |
Nov
|
Dec
(1) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2008 |
Jan
(5) |
Feb
|
Mar
(1) |
Apr
(10) |
May
(8) |
Jun
(19) |
Jul
|
Aug
|
Sep
(12) |
Oct
|
Nov
(45) |
Dec
(71) |
| 2009 |
Jan
(28) |
Feb
(13) |
Mar
(2) |
Apr
(6) |
May
(25) |
Jun
(1) |
Jul
|
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
| 2010 |
Jan
|
Feb
|
Mar
|
Apr
|
May
|
Jun
|
Jul
|
Aug
|
Sep
(2) |
Oct
|
Nov
(1) |
Dec
(1) |
| 2011 |
Jan
|
Feb
|
Mar
|
Apr
|
May
|
Jun
|
Jul
|
Aug
(2) |
Sep
(2) |
Oct
|
Nov
|
Dec
|
| 2012 |
Jan
|
Feb
|
Mar
(5) |
Apr
|
May
|
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
|
From: <Al...@im...> - 2007-08-09 13:44:39
|
Hello developers, I want to have ready the API of ByoDyn as soon as possible. Files bin/=20 initiator.py and src/central.py are already done. Please I ask you to=20=20 follow the same structure for the functions you wrote yourselves. Thanks a lot, a -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
|
From: <al...@im...> - 2007-07-25 16:47:03
|
Hello developers, at the docs directory you will find a configuration file for doxygen=20=20 to generate the api of ByoDyn. Please document the functions you=20=20 wrote for the api. I'm doing so with mines. If you don't have a clear=20=20 idea of how to do it, please let me know. Thanks a lot, a -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
|
From: <ag...@im...> - 2007-07-10 08:18:45
|
Some models can be simulated but the result of simulation is incorrect because there are some errors in the formula generation. The same models ar= e simulated correctly using SciPy or OpenModelica. Tomorrow I add a list with incorrect models that should be checked (Today, = I have forgotten this list in my home). On 09/07/07, Adri=E1n L=F3pez <al...@im...> wrote: > > Hello =C0lex, > can you be more specific about bug 1750647? What happens? > > Thanks, > > a > -- > Adri=E1n L=F3pez Garc=EDa de Lomana > > Computational Biochemistry and Biophysics Laboratory > Research Unit on Biomedical Informatics > Barcelona Biomedical Research Park > Pompeu Fabra University > Barcelona, 08003, Spain > > Phone: +34 93 316 0506; Fax: +34 93 316 0550 > > http://cbbl.imim.es > > > > ------------------------------ > > La informaci=F3 continguda en aquest missatge i en qualsevol fitxer adjun= t > =E9s confidencial, privada i d'=FAs exclusiu per al destinatari. Si no = =E9s la > persona a la qual anava dirigida aquesta informaci=F3, si us plau, notifi= qui > immediatament l'enviament erroni al remitent i esborri el missatge. > Qualsevol c=F2pia, divulgaci=F3, distribuci=F3 o utilitzaci=F3 no autorit= zada > d'aquest correu electr=F2nic i dels seus adjunts est=E0 prohibida en virt= ut de > la legislaci=F3 vigent. > > La informaci=F3n contenida en este mensaje y en cualquier fichero adjunto= es > confidencial, privada y de uso exclusivo para el destinatario. Si usted n= o > es la persona a la cual iba dirigida esta informaci=F3n, por favor, notif= ique > inmediatamente el env=EDo err=F3neo al remitente y borre el mensaje. Cual= quier > copia, divulgaci=F3n, distribuci=F3n o utilizaci=F3n no autorizada de est= e correo > electr=F3nico y de sus adjuntos est=B4 prohibida en virtud de la legislac= i=F3n > vigente. > > The information included in this e-mail and any attached files are > confidential and private. If you are not the intended recipient, please > notify the error to the sender and delete this message immediately. > Dissemination, forwarding or copying of this e-mail and its associated > attachments is strictly prohibited according with current legislation. > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > ByoDyn-developers mailing list > Byo...@li... > https://lists.sourceforge.net/lists/listinfo/byodyn-developers > > |
|
From: <al...@im...> - 2007-07-09 17:50:11
|
Hello =C0lex, can you be more specific about bug 1750647? What happens? Thanks, a -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
|
From: <ale...@gm...> - 2007-07-09 09:24:19
|
Hi Adri=E1n, I don't can add new tasks in sourceforge.net. I receive the folloving error= : Permission Denied Access to this page is restricted (either to project members or to project administrators) and you do not meet the requirements to access this page. Please contact the administrator of this project for further assistance. See you, On 30/06/07, Adri=E1n L=F3pez <al...@im...> wrote: > > Developers, > please use the tasks and bugs report system of the Sourceforge.net web > page to be aware of the work done currently by each one. If you find a bu= t, > please report it, if you fixed a bug, please, close it, if you were assig= ned > a task, please report the percentage or close it whenever the job is > completed. > > Thanks, > > a > -- > Adri=E1n L=F3pez Garc=EDa de Lomana > > Computational Biochemistry and Biophysics Laboratory > Research Unit on Biomedical Informatics > Barcelona Biomedical Research Park > Pompeu Fabra University > Barcelona, 08003, Spain > > Phone: +34 93 316 0506; Fax: +34 93 316 0550 > > http://cbbl.imim.es > > > > ------------------------------ > > La informaci=F3 continguda en aquest missatge i en qualsevol fitxer adjun= t > =E9s confidencial, privada i d'=FAs exclusiu per al destinatari. Si no = =E9s la > persona a la qual anava dirigida aquesta informaci=F3, si us plau, notifi= qui > immediatament l'enviament erroni al remitent i esborri el missatge. > Qualsevol c=F2pia, divulgaci=F3, distribuci=F3 o utilitzaci=F3 no autorit= zada > d'aquest correu electr=F2nic i dels seus adjunts est=E0 prohibida en virt= ut de > la legislaci=F3 vigent. > > La informaci=F3n contenida en este mensaje y en cualquier fichero adjunto= es > confidencial, privada y de uso exclusivo para el destinatario. Si usted n= o > es la persona a la cual iba dirigida esta informaci=F3n, por favor, notif= ique > inmediatamente el env=EDo err=F3neo al remitente y borre el mensaje. Cual= quier > copia, divulgaci=F3n, distribuci=F3n o utilizaci=F3n no autorizada de est= e correo > electr=F3nico y de sus adjuntos est=B4 prohibida en virtud de la legislac= i=F3n > vigente. > > The information included in this e-mail and any attached files are > confidential and private. If you are not the intended recipient, please > notify the error to the sender and delete this message immediately. > Dissemination, forwarding or copying of this e-mail and its associated > attachments is strictly prohibited according with current legislation. > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > ByoDyn-developers mailing list > Byo...@li... > https://lists.sourceforge.net/lists/listinfo/byodyn-developers > > |
|
From: <al...@im...> - 2007-06-30 17:54:39
|
Developers, please use the tasks and bugs report system of the Sourceforge.net=20=20 web page to be aware of the work done currently by each one. If you=20=20 find a but, please report it, if you fixed a bug, please, close it,=20=20 if you were assigned a task, please report the percentage or close it=20=20 whenever the job is completed. Thanks, a -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
|
From: <jv...@im...> - 2007-06-29 15:43:42
|
This is the type of information that should go to the programmer's reference manual (or the API description, as you have called it) En/na Adrián López ha escrit: > Please remind that the format of the variables of ByoDyn should be > "variableName" and not "variable_name". > > Thanks, > > a > -- > Adrián López García de Lomana > > Computational Biochemistry and Biophysics Laboratory > Research Unit on Biomedical Informatics > Barcelona Biomedical Research Park > Pompeu Fabra University > Barcelona, 08003, Spain > > Phone: +34 93 316 0506; Fax: +34 93 316 0550 > > http://cbbl.imim.es > > > > ------------------------------------------------------------------------ > > La informació continguda en aquest missatge i en qualsevol fitxer > adjunt és confidencial, privada i d'ús exclusiu per al destinatari. Si > no és la persona a la qual anava dirigida aquesta informació, si us > plau, notifiqui immediatament l'enviament erroni al remitent i esborri > el missatge. Qualsevol còpia, divulgació, distribució o utilització no > autoritzada d'aquest correu electrònic i dels seus adjunts està > prohibida en virtut de la legislació vigent. > > La información contenida en este mensaje y en cualquier fichero > adjunto es confidencial, privada y de uso exclusivo para el > destinatario. Si usted no es la persona a la cual iba dirigida esta > información, por favor, notifique inmediatamente el envío erróneo al > remitente y borre el mensaje. Cualquier copia, divulgación, > distribución o utilización no autorizada de este correo electrónico y > de sus adjuntos est´ prohibida en virtud de la legislación vigente. > > The information included in this e-mail and any attached files are > confidential and private. If you are not the intended recipient, > please notify the error to the sender and delete this message > immediately. Dissemination, forwarding or copying of this e-mail and > its associated attachments is strictly prohibited according with > current legislation. > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > ------------------------------------------------------------------------ > > _______________________________________________ > ByoDyn-developers mailing list > Byo...@li... > https://lists.sourceforge.net/lists/listinfo/byodyn-developers > -- -- Jordi Vill`a i Freixa Computational Biochemistry and Biophysics lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Parc de Recerca Biomèdica de Barcelon C/ Doctor Aiguader, 88; 08003 Barcelona (Spain) Tel: +34 93 316 0504 // Fax: +34 93 316 0550 e-mail: jv...@im... http://cbbl.imim.es MSc on Bioinformatics for Health Sciences http://diana.imim.es/Bioinformatics -------- La informació continguda en aquest missatge i en qualsevol fitxer adjunt és confidencial, privada i d'ús exclusiu per al destinatari. Si no és la persona a la qual anava dirigida aquesta informació, si us plau, notifiqui immediatament l'enviament erroni al remitent i esborri el missatge. Qualsevol còpia, divulgació, distribució o utilització no autoritzada d'aquest correu electrònic i dels seus adjunts està prohibida en virtut de la legislació vigent. La información contenida en este mensaje y en cualquier fichero adjunto es confidencial, privada y de uso exclusivo para el destinatario. Si usted no es la persona a la cual iba dirigida esta información, por favor, notifique inmediatamente el envÃo erróneo al remitente y borre el mensaje. Cualquier copia, divulgación, distribución o utilización no autorizada de este correo electrónico y de sus adjuntos está prohibida en virtud de la legislación vigente. The information included in this e-mail and any attached files are confidential and private. If you are not the intended recipient, please notify the error to the sender and delete this message immediately. Dissemination, forwarding or copying of this e-mail and its associated attachments is strictly prohibited according with current legislation. -------- |
|
From: <al...@im...> - 2007-06-29 13:39:18
|
Please remind that the format of the variables of ByoDyn should be=20=20 "variableName" and not "variable_name". Thanks, a -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
|
From: <al...@im...> - 2007-06-29 10:02:04
|
Dear developers, From now ever the *ONLY* valid repository for the sources of ByoDyn=20=20 is the Sourceforge.net cvs. The plan was to do it next week, but we=20=20 are going ahead of schedule. Please checkout the new version, which=20=20 is the current one of quimera at this time and commit any changes of=20=20 the code to Sourceforge.net, *NOT* to quimera. Thanks, a -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
|
From: <al...@im...> - 2007-06-28 21:21:24
|
Hello all, due specific advice, the developing sources of ByoDyn will be moved=20=20 from the CVS of quimera to the CVS of the SourceForfe.net. Right now=20=20 there is a first test, by Monday the code will be there and on Friday=20=20 6th of July 2007 the *ONLY* repository will be the cvs hosted at the=20=20 SourceForge.net. Developers, please be sure you can access to the repository as=20=20 developers. Thanks, a -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
|
From: <al...@im...> - 2007-06-28 19:48:57
|
Please developers, send me your sourceforge net username so I can add you to the=20=20 project. =C0lex, you are inscribed already. Thanks, a -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
|
From: <al...@im...> - 2007-06-27 12:22:00
|
On Jun 27, 2007, at 1:09 PM, Jordi Vill=E0 wrote: > > > En/na Adri=E1n L=F3pez ha escrit: >> Thanks Jordi for your comments on the installation guide. They are=20=20 >> (most of them) incorporated already. Please check it at the cvs=20=20 >> for agreement. > I don't want "most of them". I want "all of them". Please, leave my=20=20 > comments on my desk for me to double check it. OK >> >> I would like to highlight some issues: >> >> .- files: Talking yesterday with =C0lex we agreed to have these=20=20 >> files as documentation: >> (1) installation guide: how to install ByoDyn >> (2) quickstart guide: a document for simple use of ByoDyn: a=20=20 >> simulation, a sensitivity analysis and an optimization. Without=20=20 >> entering into the details of all possible options, just a first=20=20 >> contact for the user of ByoDyn to get an idea of what the software=20=20 >> does. >> (2) user reference manual: a manual where we describe all the=20=20 >> capabilities of ByoDyn thoroughly. We will describe the options=20=20 >> files variables and the outputs. Different options for simulations=20=20 >> and optimizations. We will advice when to use which options. Also=20=20 >> we will explain the theoretical background of the functions, for=20=20 >> example, how is the fitness function and why we are using it. >> (3) ByoDyn API: as a developer reference. Commenting all functions=20=20 >> and methods we can generate automatically with Doxygen. (4)=20=20 >> Tutorial: we did not yet establish the level but it will be based=20=20 >> on the existing one. > No. The tutorial should be merged with the quickstart guide. The=20=20 > rest is ok How should I name it? >> >> Let me know if you agree because I am a little bit confused with=20=20 >> your comments about "tutorial's based Quick start guide", merging=20=20 >> documents, etc. >> .- the ByoDyn Team: I prefer not to put all the names at all=20=20 >> documents. I think it is cleaner to describe us at the=20=20 >> userReferenceManual (please check the cvs) and leave just "the=20=20 >> ByoDyn team" for the rest of the documents. I think it is quite=20=20 >> redundant to say who are we at every single document. Over all we=20=20 >> can say as much as we want at the first section of the=20=20 >> userReferenceManual file, specifying who did what. > I want these authors in ALL the manuscripts and in this order OK > > A. L=F3pez, A. G=F3mez, M. Hern=E1ndez and J. Vill=E0-Freixa >> >> .- INSTALL: right after downloading the sources from the web and=20=20 >> decompressing the file, you see a README file that points you to=20=20 >> the doc directory. At the doc directory there is the installation=20=20 >> guide. I think it is redundant to put another file call INSTALL=20=20 >> when the README explains you how to install the software. > ok >> >> Thanks, >> a >> -- >> Adri=E1n L=F3pez Garc=EDa de Lomana >> >> Computational Biochemistry and Biophysics Laboratory >> Research Unit on Biomedical Informatics >> Barcelona Biomedical Research Park >> Pompeu Fabra University >> Barcelona, 08003, Spain >> >> Phone: +34 93 316 0506; Fax: +34 93 316 0550 >> >> http://cbbl.imim.es >> >> >> >> ---------------------------------------------------------------------=20 >> --- >> >> La informaci=F3 continguda en aquest missatge i en qualsevol fitxer=20= =20 >> adjunt =E9s confidencial, privada i d'=FAs exclusiu per al=20=20 >> destinatari. Si no =E9s la persona a la qual anava dirigida aquesta=20= =20 >> informaci=F3, si us plau, notifiqui immediatament l'enviament erroni=20= =20 >> al remitent i esborri el missatge. Qualsevol c=F2pia, divulgaci=F3,=20= =20 >> distribuci=F3 o utilitzaci=F3 no autoritzada d'aquest correu=20=20 >> electr=F2nic i dels seus adjunts est=E0 prohibida en virtut de la=20=20 >> legislaci=F3 vigent. >> >> La informaci=F3n contenida en este mensaje y en cualquier fichero=20=20 >> adjunto es confidencial, privada y de uso exclusivo para el=20=20 >> destinatario. Si usted no es la persona a la cual iba dirigida=20=20 >> esta informaci=F3n, por favor, notifique inmediatamente el env=EDo=20=20 >> err=F3neo al remitente y borre el mensaje. Cualquier copia,=20=20 >> divulgaci=F3n, distribuci=F3n o utilizaci=F3n no autorizada de este=20= =20 >> correo electr=F3nico y de sus adjuntos est=B4 prohibida en virtud de=20= =20 >> la legislaci=F3n vigente. >> >> The information included in this e-mail and any attached files are=20=20 >> confidential and private. If you are not the intended recipient,=20=20 >> please notify the error to the sender and delete this message=20=20 >> immediately. Dissemination, forwarding or copying of this e-mail=20=20 >> and its associated attachments is strictly prohibited according=20=20 >> with current legislation. >> >> ---------------------------------------------------------------------=20 >> --- >> >> ---------------------------------------------------------------------=20 >> ---- >> This SF.net email is sponsored by DB2 Express >> Download DB2 Express C - the FREE version of DB2 express and take >> control of your XML. No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> ---------------------------------------------------------------------=20 >> --- >> >> _______________________________________________ >> ByoDyn-developers mailing list >> Byo...@li... >> https://lists.sourceforge.net/lists/listinfo/byodyn-developers >> > > --=20 > -- > Jordi Vill`a i Freixa > Computational Biochemistry and Biophysics lab > Research Group on Biomedical Informatics (GRIB) - IMIM/UPF > Parc de Recerca Biom=C3=A8dica de Barcelon > C/ Doctor Aiguader, 88; 08003 Barcelona (Spain) > Tel: +34 93 316 0504 // Fax: +34 93 316 0550 > e-mail: jv...@im... http://cbbl.imim.es > > MSc on Bioinformatics for Health Sciences > http://diana.imim.es/Bioinformatics > -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
|
From: <jv...@im...> - 2007-06-27 11:21:46
|
Hi Adrián, My opinion is that they should be merged to decrease the number of files in the documentation, which only add difficulties in coping with all the information. A short chapter for a quick start at the beginning of the biobridge tutorial is more than enough. The tutorial should be based on explaining the use of the program with very simple results. The three demos you have compiled look ok to me to see the possibilities of the software, and I think that the interested user will be able to go to the detailed papers for extra information. Jordi En/na Adrián López ha escrit: > Hello Jordi, > > If I do not understand you wrong you ask me to merge the tutorial > document with the quick start guide. Is that correct? I think it has > sense to keep them at separate files as we can distinguish two flavours: > (1) a quick technical document where we explain the use options of > ByoDyn for a simulation, a sensitivity analysis and an optimization. > It should be very technical and self understandable. It could be > followed step by step > (2) a document more focused on the results of the software rather than > on the software itself. The explanation of the models will be more > important that how to run the models. This document should be intended > for those who have already understood the quick start guide. This > document could have references to the biology of the models and open > questions to discuss at a teaching session. > > Please let me know your opinion. > > Thanks, > > a > -- > Adrián López García de Lomana > > Computational Biochemistry and Biophysics Laboratory > Research Unit on Biomedical Informatics > Barcelona Biomedical Research Park > Pompeu Fabra University > Barcelona, 08003, Spain > > Phone: +34 93 316 0506; Fax: +34 93 316 0550 > > http://cbbl.imim.es > > > > ------------------------------------------------------------------------ > > La informació continguda en aquest missatge i en qualsevol fitxer > adjunt és confidencial, privada i d'ús exclusiu per al destinatari. Si > no és la persona a la qual anava dirigida aquesta informació, si us > plau, notifiqui immediatament l'enviament erroni al remitent i esborri > el missatge. Qualsevol còpia, divulgació, distribució o utilització no > autoritzada d'aquest correu electrònic i dels seus adjunts està > prohibida en virtut de la legislació vigent. > > La información contenida en este mensaje y en cualquier fichero > adjunto es confidencial, privada y de uso exclusivo para el > destinatario. Si usted no es la persona a la cual iba dirigida esta > información, por favor, notifique inmediatamente el envío erróneo al > remitente y borre el mensaje. Cualquier copia, divulgación, > distribución o utilización no autorizada de este correo electrónico y > de sus adjuntos est´ prohibida en virtud de la legislación vigente. > > The information included in this e-mail and any attached files are > confidential and private. If you are not the intended recipient, > please notify the error to the sender and delete this message > immediately. Dissemination, forwarding or copying of this e-mail and > its associated attachments is strictly prohibited according with > current legislation. > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > ------------------------------------------------------------------------ > > _______________________________________________ > ByoDyn-developers mailing list > Byo...@li... > https://lists.sourceforge.net/lists/listinfo/byodyn-developers > -- -- Jordi Vill`a i Freixa Computational Biochemistry and Biophysics lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Parc de Recerca Biomèdica de Barcelon C/ Doctor Aiguader, 88; 08003 Barcelona (Spain) Tel: +34 93 316 0504 // Fax: +34 93 316 0550 e-mail: jv...@im... http://cbbl.imim.es MSc on Bioinformatics for Health Sciences http://diana.imim.es/Bioinformatics |
|
From: <al...@im...> - 2007-06-27 11:10:12
|
Hello Jordi, If I do not understand you wrong you ask me to merge the tutorial=20=20 document with the quick start guide. Is that correct? I think it has=20=20 sense to keep them at separate files as we can distinguish two flavours: =09=09 (1) a quick technical document where we explain the use options of=20=20 ByoDyn for a simulation, a sensitivity analysis and an optimization.=20=20 It should be very technical and self understandable. It could be=20=20 followed step by step (2) a document more focused on the results of the software rather=20=20 than on the software itself. The explanation of the models will be=20=20 more important that how to run the models. This document should be=20=20 intended for those who have already understood the quick start guide.=20=20 This document could have references to the biology of the models and=20=20 open questions to discuss at a teaching session. Please let me know your opinion. Thanks, a -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
|
From: <al...@im...> - 2007-06-27 10:55:17
|
Thanks Jordi for your comments on the installation guide. They are=20=20 (most of them) incorporated already. Please check it at the cvs for=20=20 agreement. I would like to highlight some issues: .- files: Talking yesterday with =C0lex we agreed to have these files=20= =20 as documentation: (1) installation guide: how to install ByoDyn (2) quickstart guide: a document for simple use of ByoDyn: a=20=20 simulation, a sensitivity analysis and an optimization. Without=20=20 entering into the details of all possible options, just a first=20=20 contact for the user of ByoDyn to get an idea of what the software does. (2) user reference manual: a manual where we describe all the=20=20 capabilities of ByoDyn thoroughly. We will describe the options files=20=20 variables and the outputs. Different options for simulations and=20=20 optimizations. We will advice when to use which options. Also we will=20=20 explain the theoretical background of the functions, for example, how=20=20 is the fitness function and why we are using it. (3) ByoDyn API: as a developer reference. Commenting all functions=20=20 and methods we can generate automatically with Doxygen. (4) Tutorial: we did not yet establish the level but it will be=20=20 based on the existing one. Let me know if you agree because I am a little bit confused with=20=20 your comments about "tutorial's based Quick start guide", merging=20=20 documents, etc. =09 .- the ByoDyn Team: I prefer not to put all the names at all=20=20 documents. I think it is cleaner to describe us at the=20=20 userReferenceManual (please check the cvs) and leave just "the ByoDyn=20=20 team" for the rest of the documents. I think it is quite redundant to=20=20 say who are we at every single document. Over all we can say as much=20=20 as we want at the first section of the userReferenceManual file,=20=20 specifying who did what. .- INSTALL: right after downloading the sources from the web and=20=20 decompressing the file, you see a README file that points you to the=20=20 doc directory. At the doc directory there is the installation guide.=20=20 I think it is redundant to put another file call INSTALL when the=20=20 README explains you how to install the software. Thanks, a -- Adri=E1n L=F3pez Garc=EDa de Lomana Computational Biochemistry and Biophysics Laboratory Research Unit on Biomedical Informatics Barcelona Biomedical Research Park Pompeu Fabra University Barcelona, 08003, Spain Phone: +34 93 316 0506; Fax: +34 93 316 0550 http://cbbl.imim.es -------- La informaci=C3=B3 continguda en aquest missatge i en qualsevol fitxer=20 adjunt =C3=A9s confidencial, privada i d'=C3=BAs exclusiu per al destinatar= i. Si no =C3=A9s la persona a la qual anava dirigida aquesta informaci=C3=B3, = si us=20 plau, notifiqui immediatament l'enviament erroni al remitent i esborri=20 el missatge. Qualsevol c=C3=B2pia, divulgaci=C3=B3, distribuci=C3=B3 o util= itzaci=C3=B3 no=20 autoritzada d'aquest correu electr=C3=B2nic i dels seus adjunts est=C3=A0= =20 prohibida en virtut de la legislaci=C3=B3 vigent. La informaci=C3=B3n contenida en este mensaje y en cualquier fichero=20 adjunto es confidencial, privada y de uso exclusivo para el=20 destinatario. Si usted no es la persona a la cual iba dirigida esta=20 informaci=C3=B3n, por favor, notifique inmediatamente el env=C3=ADo err=C3= =B3neo al=20 remitente y borre el mensaje. Cualquier copia, divulgaci=C3=B3n,=20 distribuci=C3=B3n o utilizaci=C3=B3n no autorizada de este correo electr=C3= =B3nico y=20 de sus adjuntos est=C3=A1 prohibida en virtud de la legislaci=C3=B3n vigent= e. The information included in this e-mail and any attached files are=20 confidential and private. If you are not the intended recipient,=20 please notify the error to the sender and delete this message=20 immediately. Dissemination, forwarding or copying of this e-mail and=20 its associated attachments is strictly prohibited according with=20 current legislation. -------- |
5 messages has been excluded from this view by a project administrator.