[Bugs-r-devel] SF.net SVN: bugs-r:[270] trunk/R2WinBUGS

[<li...@us...>]

Revision: 270
          http://sourceforge.net/p/bugs-r/code/270
Author:   ligges
Date:     2015-07-29 17:09:35 +0000 (Wed, 29 Jul 2015)
Log Message:
-----------
comit for last CRAN version

Modified Paths:
--------------
    trunk/R2WinBUGS/DESCRIPTION
    trunk/R2WinBUGS/R/openbugs.R
    trunk/R2WinBUGS/R/read.bugs.R
    trunk/R2WinBUGS/man/bugs.Rd
    trunk/R2WinBUGS/man/openbugs.Rd
    trunk/R2WinBUGS/vignettes/R2WinBUGS.Rnw
    trunk/R2WinBUGS/vignettes/bugs.tex

Modified: trunk/R2WinBUGS/DESCRIPTION
===================================================================
--- trunk/R2WinBUGS/DESCRIPTION	2015-05-31 15:27:27 UTC (rev 269)
+++ trunk/R2WinBUGS/DESCRIPTION	2015-07-29 17:09:35 UTC (rev 270)
@@ -1,22 +1,20 @@
 Package: R2WinBUGS
-Title: Running WinBUGS and OpenBUGS from R / S-PLUS
-Date: 2013-04-07
-Version: 2.1-19
+Title: Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS'
+Date: 2015-05-31
+Version: 2.1-20
 Author: originally written by Andrew Gelman <ge...@st...>;
  changes and packaged by Sibylle Sturtz <st...@st...>
  and Uwe Ligges <li...@st...>.
  With considerable contributions by Gregor Gorjanc <gre...@bf...>
  and Jouni Kerman <ke...@st...>.
  Ported to S-PLUS by Insightful Corp.
-Description: Using this package,
- it is possible to call a BUGS model, summarize inferences and
- convergence in a table and graph, and save the simulations in arrays for easy access
- in R / S-PLUS. In S-PLUS, the openbugs functionality and the windows emulation
- functionality is not yet available.
+Description: Invoke a 'BUGS' model in 'OpenBUGS' or 'WinBUGS', a class "bugs" for 'BUGS' 
+  results and functions to work with that class.
+  Function write.model() allows a 'BUGS' model file to be written.  
+  The class and auxiliary functions could be used with other MCMC programs, including 'JAGS'.
 Depends: R (>= 2.13.0), coda (>= 0.11-0), boot
 Suggests: BRugs (>= 0.3-2)
-SystemRequirements: WinBUGS 1.4
-URL: http://www.stat.columbia.edu/~gelman/bugsR/
+SystemRequirements: OpenBugs for functions bugs() and openbugs() or WinBUGS 1.4 for function bugs()
 Maintainer: Uwe Ligges <li...@st...>
 License: GPL-2
 Dialect: R, S-PLUS

Modified: trunk/R2WinBUGS/R/openbugs.R
===================================================================
--- trunk/R2WinBUGS/R/openbugs.R	2015-05-31 15:27:27 UTC (rev 269)
+++ trunk/R2WinBUGS/R/openbugs.R	2015-07-29 17:09:35 UTC (rev 270)
@@ -6,7 +6,7 @@
 {
   if(!is.R())
     stop("OpenBUGS is not yet available in S-PLUS")
-  if(!require("BRugs"))
+  if(!requireNamespace("BRugs"))
     stop("BRugs is required")
 
   ## switching from bugs() to BRugsFit() notation

Modified: trunk/R2WinBUGS/R/read.bugs.R
===================================================================
--- trunk/R2WinBUGS/R/read.bugs.R	2015-05-31 15:27:27 UTC (rev 269)
+++ trunk/R2WinBUGS/R/read.bugs.R	2015-07-29 17:09:35 UTC (rev 270)
@@ -1,5 +1,5 @@
 read.bugs <- function(codafiles, ...){
-    if(!is.R() && !require("coda"))
+    if(!is.R() && !requireNamespace("coda", quietly = TRUE))
         stop("package 'coda' is required to use this function")
     mcmc.list(lapply(codafiles, read.coda, 
                      index.file = file.path(dirname(codafiles[1]), "codaIndex.txt"), 

Modified: trunk/R2WinBUGS/man/bugs.Rd
===================================================================
--- trunk/R2WinBUGS/man/bugs.Rd	2015-05-31 15:27:27 UTC (rev 269)
+++ trunk/R2WinBUGS/man/bugs.Rd	2015-07-29 17:09:35 UTC (rev 270)
@@ -208,8 +208,7 @@
      \emph{Journal of Statistical Software} 12(3), 1-16.
 }
 
-\author{Andrew Gelman, \email{ge...@st...},
-  \url{http:/www.stat.columbia.edu/~gelman/bugsR/}; modifications and
+\author{Andrew Gelman, \email{ge...@st...}; modifications and
   packaged by Sibylle Sturtz, \email{st...@st...},
   and Uwe Ligges.}
 

Modified: trunk/R2WinBUGS/man/openbugs.Rd
===================================================================
--- trunk/R2WinBUGS/man/openbugs.Rd	2015-05-31 15:27:27 UTC (rev 269)
+++ trunk/R2WinBUGS/man/openbugs.Rd	2015-07-29 17:09:35 UTC (rev 270)
@@ -63,8 +63,7 @@
 
 \value{A \code{\link{bugs}} object.}
 
-\author{Andrew Gelman, \email{ge...@st...},
-  \url{http:/www.stat.columbia.edu/~gelman/bugsR/}; modifications and
+\author{Andrew Gelman, \email{ge...@st...}; modifications and
   packaged by Sibylle Sturtz, \email{st...@st...},
   and Uwe Ligges.
 }

Modified: trunk/R2WinBUGS/vignettes/R2WinBUGS.Rnw
===================================================================
--- trunk/R2WinBUGS/vignettes/R2WinBUGS.Rnw	2015-05-31 15:27:27 UTC (rev 269)
+++ trunk/R2WinBUGS/vignettes/R2WinBUGS.Rnw	2015-07-29 17:09:35 UTC (rev 270)
@@ -1,6 +1,6 @@
 %\VignetteIndexEntry{R2WinBUGS}
 \documentclass{Z}
-\usepackage{RdRW,thumbpdf}
+\usepackage{RdRW}
 \newcommand{\WinBUGS}{{\proglang{WinBUGS}}{}}
 \newcommand{\RW}{{\pkg{R2WinBUGS}}{}}
 \renewcommand{\R}{{\proglang{R}}{}}

Modified: trunk/R2WinBUGS/vignettes/bugs.tex
===================================================================
--- trunk/R2WinBUGS/vignettes/bugs.tex	2015-05-31 15:27:27 UTC (rev 269)
+++ trunk/R2WinBUGS/vignettes/bugs.tex	2015-07-29 17:09:35 UTC (rev 270)
@@ -137,7 +137,7 @@
 \end{ldescription}
 \end{Value}
 \begin{Author}\relax
-Andrew Gelman, \email{ge...@st...}, \url{http:/www.stat.columbia.edu/~gelman/bugsR/};
+Andrew Gelman, \email{ge...@st...};
 modifications and packaged by Sibylle Sturtz, \email{st...@st...}, and Uwe Ligges.
 \end{Author}
 \begin{References}\relax

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