|
From: <chr...@us...> - 2012-07-24 08:42:24
|
Revision: 255
http://bugs-r.svn.sourceforge.net/bugs-r/?rev=255&view=rev
Author: chris-jackson
Date: 2012-07-24 08:42:13 +0000 (Tue, 24 Jul 2012)
Log Message:
-----------
Depend on OpenBUGS 3.2.2, and find documentation from both source and binary installations.
Modified Paths:
--------------
trunk/BRugs/configure
trunk/BRugs/configure.ac
Modified: trunk/BRugs/configure
===================================================================
--- trunk/BRugs/configure 2012-07-23 17:47:46 UTC (rev 254)
+++ trunk/BRugs/configure 2012-07-24 08:42:13 UTC (rev 255)
@@ -1,11 +1,11 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.65 for BRugs 0.7.
+# Generated by GNU Autoconf 2.68 for BRugs 0.8.
#
#
# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
-# 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation,
-# Inc.
+# 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010 Free Software
+# Foundation, Inc.
#
#
# This configure script is free software; the Free Software Foundation
@@ -89,6 +89,7 @@
IFS=" "" $as_nl"
# Find who we are. Look in the path if we contain no directory separator.
+as_myself=
case $0 in #((
*[\\/]* ) as_myself=$0 ;;
*) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
@@ -213,11 +214,18 @@
# We cannot yet assume a decent shell, so we have to provide a
# neutralization value for shells without unset; and this also
# works around shells that cannot unset nonexistent variables.
+ # Preserve -v and -x to the replacement shell.
BASH_ENV=/dev/null
ENV=/dev/null
(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
export CONFIG_SHELL
- exec "$CONFIG_SHELL" "$as_myself" ${1+"$@"}
+ case $- in # ((((
+ *v*x* | *x*v* ) as_opts=-vx ;;
+ *v* ) as_opts=-v ;;
+ *x* ) as_opts=-x ;;
+ * ) as_opts= ;;
+ esac
+ exec "$CONFIG_SHELL" $as_opts "$as_myself" ${1+"$@"}
fi
if test x$as_have_required = xno; then :
@@ -315,7 +323,7 @@
test -d "$as_dir" && break
done
test -z "$as_dirs" || eval "mkdir $as_dirs"
- } || test -d "$as_dir" || as_fn_error "cannot create directory $as_dir"
+ } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
} # as_fn_mkdir_p
@@ -355,19 +363,19 @@
fi # as_fn_arith
-# as_fn_error ERROR [LINENO LOG_FD]
-# ---------------------------------
+# as_fn_error STATUS ERROR [LINENO LOG_FD]
+# ----------------------------------------
# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
-# script with status $?, using 1 if that was 0.
+# script with STATUS, using 1 if that was 0.
as_fn_error ()
{
- as_status=$?; test $as_status -eq 0 && as_status=1
- if test "$3"; then
- as_lineno=${as_lineno-"$2"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
- $as_echo "$as_me:${as_lineno-$LINENO}: error: $1" >&$3
+ as_status=$1; test $as_status -eq 0 && as_status=1
+ if test "$4"; then
+ as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ $as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
fi
- $as_echo "$as_me: error: $1" >&2
+ $as_echo "$as_me: error: $2" >&2
as_fn_exit $as_status
} # as_fn_error
@@ -529,7 +537,7 @@
exec 6>&1
# Name of the host.
-# hostname on some systems (SVR3.2, Linux) returns a bogus exit status,
+# hostname on some systems (SVR3.2, old GNU/Linux) returns a bogus exit status,
# so uname gets run too.
ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q`
@@ -548,8 +556,8 @@
# Identity of this package.
PACKAGE_NAME='BRugs'
PACKAGE_TARNAME='brugs'
-PACKAGE_VERSION='0.7'
-PACKAGE_STRING='BRugs 0.7'
+PACKAGE_VERSION='0.8'
+PACKAGE_STRING='BRugs 0.8'
PACKAGE_BUGREPORT=''
PACKAGE_URL=''
@@ -680,8 +688,9 @@
fi
case $ac_option in
- *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
- *) ac_optarg=yes ;;
+ *=?*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
+ *=) ac_optarg= ;;
+ *) ac_optarg=yes ;;
esac
# Accept the important Cygnus configure options, so we can diagnose typos.
@@ -726,7 +735,7 @@
ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
- as_fn_error "invalid feature name: $ac_useropt"
+ as_fn_error $? "invalid feature name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_user_opts in
@@ -752,7 +761,7 @@
ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
- as_fn_error "invalid feature name: $ac_useropt"
+ as_fn_error $? "invalid feature name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_user_opts in
@@ -956,7 +965,7 @@
ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
- as_fn_error "invalid package name: $ac_useropt"
+ as_fn_error $? "invalid package name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_user_opts in
@@ -972,7 +981,7 @@
ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
# Reject names that are not valid shell variable names.
expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
- as_fn_error "invalid package name: $ac_useropt"
+ as_fn_error $? "invalid package name: $ac_useropt"
ac_useropt_orig=$ac_useropt
ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
case $ac_user_opts in
@@ -1002,8 +1011,8 @@
| --x-librar=* | --x-libra=* | --x-libr=* | --x-lib=* | --x-li=* | --x-l=*)
x_libraries=$ac_optarg ;;
- -*) as_fn_error "unrecognized option: \`$ac_option'
-Try \`$0 --help' for more information."
+ -*) as_fn_error $? "unrecognized option: \`$ac_option'
+Try \`$0 --help' for more information"
;;
*=*)
@@ -1011,7 +1020,7 @@
# Reject names that are not valid shell variable names.
case $ac_envvar in #(
'' | [0-9]* | *[!_$as_cr_alnum]* )
- as_fn_error "invalid variable name: \`$ac_envvar'" ;;
+ as_fn_error $? "invalid variable name: \`$ac_envvar'" ;;
esac
eval $ac_envvar=\$ac_optarg
export $ac_envvar ;;
@@ -1021,7 +1030,7 @@
$as_echo "$as_me: WARNING: you should use --build, --host, --target" >&2
expr "x$ac_option" : ".*[^-._$as_cr_alnum]" >/dev/null &&
$as_echo "$as_me: WARNING: invalid host type: $ac_option" >&2
- : ${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option}
+ : "${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option}"
;;
esac
@@ -1029,13 +1038,13 @@
if test -n "$ac_prev"; then
ac_option=--`echo $ac_prev | sed 's/_/-/g'`
- as_fn_error "missing argument to $ac_option"
+ as_fn_error $? "missing argument to $ac_option"
fi
if test -n "$ac_unrecognized_opts"; then
case $enable_option_checking in
no) ;;
- fatal) as_fn_error "unrecognized options: $ac_unrecognized_opts" ;;
+ fatal) as_fn_error $? "unrecognized options: $ac_unrecognized_opts" ;;
*) $as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2 ;;
esac
fi
@@ -1058,7 +1067,7 @@
[\\/$]* | ?:[\\/]* ) continue;;
NONE | '' ) case $ac_var in *prefix ) continue;; esac;;
esac
- as_fn_error "expected an absolute directory name for --$ac_var: $ac_val"
+ as_fn_error $? "expected an absolute directory name for --$ac_var: $ac_val"
done
# There might be people who depend on the old broken behavior: `$host'
@@ -1072,8 +1081,8 @@
if test "x$host_alias" != x; then
if test "x$build_alias" = x; then
cross_compiling=maybe
- $as_echo "$as_me: WARNING: If you wanted to set the --build type, don't use --host.
- If a cross compiler is detected then cross compile mode will be used." >&2
+ $as_echo "$as_me: WARNING: if you wanted to set the --build type, don't use --host.
+ If a cross compiler is detected then cross compile mode will be used" >&2
elif test "x$build_alias" != "x$host_alias"; then
cross_compiling=yes
fi
@@ -1088,9 +1097,9 @@
ac_pwd=`pwd` && test -n "$ac_pwd" &&
ac_ls_di=`ls -di .` &&
ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
- as_fn_error "working directory cannot be determined"
+ as_fn_error $? "working directory cannot be determined"
test "X$ac_ls_di" = "X$ac_pwd_ls_di" ||
- as_fn_error "pwd does not report name of working directory"
+ as_fn_error $? "pwd does not report name of working directory"
# Find the source files, if location was not specified.
@@ -1129,11 +1138,11 @@
fi
if test ! -r "$srcdir/$ac_unique_file"; then
test "$ac_srcdir_defaulted" = yes && srcdir="$ac_confdir or .."
- as_fn_error "cannot find sources ($ac_unique_file) in $srcdir"
+ as_fn_error $? "cannot find sources ($ac_unique_file) in $srcdir"
fi
ac_msg="sources are in $srcdir, but \`cd $srcdir' does not work"
ac_abs_confdir=`(
- cd "$srcdir" && test -r "./$ac_unique_file" || as_fn_error "$ac_msg"
+ cd "$srcdir" && test -r "./$ac_unique_file" || as_fn_error $? "$ac_msg"
pwd)`
# When building in place, set srcdir=.
if test "$ac_abs_confdir" = "$ac_pwd"; then
@@ -1159,7 +1168,7 @@
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
-\`configure' configures BRugs 0.7 to adapt to many kinds of systems.
+\`configure' configures BRugs 0.8 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@@ -1173,7 +1182,7 @@
--help=short display options specific to this package
--help=recursive display the short help of all the included packages
-V, --version display version information and exit
- -q, --quiet, --silent do not print \`checking...' messages
+ -q, --quiet, --silent do not print \`checking ...' messages
--cache-file=FILE cache test results in FILE [disabled]
-C, --config-cache alias for \`--cache-file=config.cache'
-n, --no-create do not create output files
@@ -1220,15 +1229,15 @@
if test -n "$ac_init_help"; then
case $ac_init_help in
- short | recursive ) echo "Configuration of BRugs 0.7:";;
+ short | recursive ) echo "Configuration of BRugs 0.8:";;
esac
cat <<\_ACEOF
Optional Packages:
--with-PACKAGE[=ARG] use PACKAGE [ARG=yes]
--without-PACKAGE do not use PACKAGE (same as --with-PACKAGE=no)
- --with-openbugs=PATH the location of OpenBUGS installed from the source
- package, by default /usr/local/lib/OpenBUGS
+ --with-openbugs=PATH the location of the OpenBUGS installation, by
+ default /usr/local
Some influential environment variables:
CC C compiler command
@@ -1305,10 +1314,10 @@
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
-BRugs configure 0.7
-generated by GNU Autoconf 2.65
+BRugs configure 0.8
+generated by GNU Autoconf 2.68
-Copyright (C) 2009 Free Software Foundation, Inc.
+Copyright (C) 2010 Free Software Foundation, Inc.
This configure script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it.
_ACEOF
@@ -1352,7 +1361,7 @@
ac_retval=1
fi
- eval $as_lineno_stack; test "x$as_lineno_stack" = x && { as_lineno=; unset as_lineno;}
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
as_fn_set_status $ac_retval
} # ac_fn_c_try_compile
@@ -1398,7 +1407,7 @@
# interfere with the next link command; also delete a directory that is
# left behind by Apple's compiler. We do this before executing the actions.
rm -rf conftest.dSYM conftest_ipa8_conftest.oo
- eval $as_lineno_stack; test "x$as_lineno_stack" = x && { as_lineno=; unset as_lineno;}
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
as_fn_set_status $ac_retval
} # ac_fn_c_try_link
@@ -1406,8 +1415,8 @@
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
-It was created by BRugs $as_me 0.7, which was
-generated by GNU Autoconf 2.65. Invocation command line was
+It was created by BRugs $as_me 0.8, which was
+generated by GNU Autoconf 2.68. Invocation command line was
$ $0 $@
@@ -1517,11 +1526,9 @@
{
echo
- cat <<\_ASBOX
-## ---------------- ##
+ $as_echo "## ---------------- ##
## Cache variables. ##
-## ---------------- ##
-_ASBOX
+## ---------------- ##"
echo
# The following way of writing the cache mishandles newlines in values,
(
@@ -1555,11 +1562,9 @@
)
echo
- cat <<\_ASBOX
-## ----------------- ##
+ $as_echo "## ----------------- ##
## Output variables. ##
-## ----------------- ##
-_ASBOX
+## ----------------- ##"
echo
for ac_var in $ac_subst_vars
do
@@ -1572,11 +1577,9 @@
echo
if test -n "$ac_subst_files"; then
- cat <<\_ASBOX
-## ------------------- ##
+ $as_echo "## ------------------- ##
## File substitutions. ##
-## ------------------- ##
-_ASBOX
+## ------------------- ##"
echo
for ac_var in $ac_subst_files
do
@@ -1590,11 +1593,9 @@
fi
if test -s confdefs.h; then
- cat <<\_ASBOX
-## ----------- ##
+ $as_echo "## ----------- ##
## confdefs.h. ##
-## ----------- ##
-_ASBOX
+## ----------- ##"
echo
cat confdefs.h
echo
@@ -1649,7 +1650,12 @@
ac_site_file1=NONE
ac_site_file2=NONE
if test -n "$CONFIG_SITE"; then
- ac_site_file1=$CONFIG_SITE
+ # We do not want a PATH search for config.site.
+ case $CONFIG_SITE in #((
+ -*) ac_site_file1=./$CONFIG_SITE;;
+ */*) ac_site_file1=$CONFIG_SITE;;
+ *) ac_site_file1=./$CONFIG_SITE;;
+ esac
elif test "x$prefix" != xNONE; then
ac_site_file1=$prefix/share/config.site
ac_site_file2=$prefix/etc/config.site
@@ -1664,7 +1670,11 @@
{ $as_echo "$as_me:${as_lineno-$LINENO}: loading site script $ac_site_file" >&5
$as_echo "$as_me: loading site script $ac_site_file" >&6;}
sed 's/^/| /' "$ac_site_file" >&5
- . "$ac_site_file"
+ . "$ac_site_file" \
+ || { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "failed to load site script $ac_site_file
+See \`config.log' for more details" "$LINENO" 5; }
fi
done
@@ -1740,7 +1750,7 @@
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
{ $as_echo "$as_me:${as_lineno-$LINENO}: error: changes in the environment can compromise the build" >&5
$as_echo "$as_me: error: changes in the environment can compromise the build" >&2;}
- as_fn_error "run \`make distclean' and/or \`rm $cache_file' and start over" "$LINENO" 5
+ as_fn_error $? "run \`make distclean' and/or \`rm $cache_file' and start over" "$LINENO" 5
fi
## -------------------- ##
## Main body of script. ##
@@ -1754,16 +1764,6 @@
-## Work around the inconsistency between the installation destinations of the 3.2.1 source and binary packages.
-## Source installs library in $prefix/lib/OpenBUGS/lib, doc in $prefix/lib/OpenBUGS/doc.
-## Binaries install in standards-compliant locations $prefix/lib and $prefix/share/doc/openbugs-version respectively.
-## Look in all of these places.
-## Return OPENBUGS = $prefix/lib/OpenBUGS for source installations, and
-## OPENBUGS = $prefix for binary installations.
-## Return OPENBUGSDOC = $prefix/lib/OpenBUGS/doc for source installations,
-## and OPENBUGSDOC = $prefix/share/doc/openbugs-version for binary installations.
-## If user specifies -with-openbugs, this is interpreted for a source installation.
-
## TODO only runs on x86 Linux - give error on other unixes.
@@ -1773,7 +1773,7 @@
set dummy OpenBUGS; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_path_ac_prefix_program+set}" = set; then :
+if ${ac_cv_path_ac_prefix_program+:} false; then :
$as_echo_n "(cached) " >&6
else
case $ac_prefix_program in
@@ -1869,21 +1869,29 @@
if test -n "$openbugs_path" ; then
OPENBUGS=${openbugs_path}
- SOURCEINST=true
else
if test "$prefix" = "NONE" ; then
- as_fn_error "OpenBUGS not found. Install OpenBUGS 3.2.1 or later, or specify its location using, for example, R CMD INSTALL BRugs --configure-args='--with-openbugs=/usr/local/lib/OpenBUGS' " "$LINENO" 5
+ as_fn_error $? "OpenBUGS 3.2.2 or later not found. Install it, or specify its location using, for example, R CMD INSTALL BRugs --configure-args='--with-openbugs=/usr/local' " "$LINENO" 5
else
- if test -e ${prefix}/lib/OpenBUGS/lib/libOpenBUGS.so ; then
- OPENBUGS=${prefix}/lib/OpenBUGS
- SOURCEINST=true
- else
+ if test -e ${prefix}/lib/libOpenBUGS.so ; then
OPENBUGS=${prefix}
- SOURCEINST=false
+ elif test -e ${prefix}/lib/OpenBUGS/lib/libOpenBUGS.so ; then # for 3.2.1
+ OPENBUGS=${prefix}
fi
fi
fi
+VERSION=`echo "modelQuit()" | ${OPENBUGS}/bin/OpenBUGS | sed -ne "s/OpenBUGS version \(.*\) rev \(.*\)/\1/p"`
+if test `echo ${VERSION} |cut -d. -f1` -lt 3; then
+ as_fn_error $? "Requires OpenBUGS version 3.2.2 or greater" "$LINENO" 5
+fi
+if test `echo ${VERSION} |cut -d. -f1` -eq 3 -a `echo ${VERSION} |cut -d. -f2` -lt 2 ; then
+ as_fn_error $? "Requires OpenBUGS version 3.2.2 or greater" "$LINENO" 5
+fi
+if test `echo ${VERSION} |cut -d. -f1` -eq 3 -a `echo ${VERSION} |cut -d. -f2` -eq 2 -a `echo ${VERSION} |cut -d. -f3` -lt 2 ; then
+ as_fn_error $? "Requires OpenBUGS version 3.2.2 or greater" "$LINENO" 5
+fi
+
OLDFLAGS=${LDFLAGS}
LDFLAGS="-L${OPENBUGS}/lib -m32"
ac_ext=c
@@ -1896,7 +1904,7 @@
set dummy ${ac_tool_prefix}gcc; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_CC+set}" = set; then :
+if ${ac_cv_prog_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
@@ -1936,7 +1944,7 @@
set dummy gcc; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_ac_ct_CC+set}" = set; then :
+if ${ac_cv_prog_ac_ct_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$ac_ct_CC"; then
@@ -1989,7 +1997,7 @@
set dummy ${ac_tool_prefix}cc; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_CC+set}" = set; then :
+if ${ac_cv_prog_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
@@ -2029,7 +2037,7 @@
set dummy cc; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_CC+set}" = set; then :
+if ${ac_cv_prog_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
@@ -2088,7 +2096,7 @@
set dummy $ac_tool_prefix$ac_prog; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_CC+set}" = set; then :
+if ${ac_cv_prog_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$CC"; then
@@ -2132,7 +2140,7 @@
set dummy $ac_prog; ac_word=$2
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
$as_echo_n "checking for $ac_word... " >&6; }
-if test "${ac_cv_prog_ac_ct_CC+set}" = set; then :
+if ${ac_cv_prog_ac_ct_CC+:} false; then :
$as_echo_n "(cached) " >&6
else
if test -n "$ac_ct_CC"; then
@@ -2186,8 +2194,8 @@
test -z "$CC" && { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-as_fn_error "no acceptable C compiler found in \$PATH
-See \`config.log' for more details." "$LINENO" 5; }
+as_fn_error $? "no acceptable C compiler found in \$PATH
+See \`config.log' for more details" "$LINENO" 5; }
# Provide some information about the compiler.
$as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler version" >&5
@@ -2301,9 +2309,8 @@
{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-{ as_fn_set_status 77
-as_fn_error "C compiler cannot create executables
-See \`config.log' for more details." "$LINENO" 5; }; }
+as_fn_error 77 "C compiler cannot create executables
+See \`config.log' for more details" "$LINENO" 5; }
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
$as_echo "yes" >&6; }
@@ -2345,8 +2352,8 @@
else
{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-as_fn_error "cannot compute suffix of executables: cannot compile and link
-See \`config.log' for more details." "$LINENO" 5; }
+as_fn_error $? "cannot compute suffix of executables: cannot compile and link
+See \`config.log' for more details" "$LINENO" 5; }
fi
rm -f conftest conftest$ac_cv_exeext
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_exeext" >&5
@@ -2403,9 +2410,9 @@
else
{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-as_fn_error "cannot run C compiled programs.
+as_fn_error $? "cannot run C compiled programs.
If you meant to cross compile, use \`--host'.
-See \`config.log' for more details." "$LINENO" 5; }
+See \`config.log' for more details" "$LINENO" 5; }
fi
fi
fi
@@ -2416,7 +2423,7 @@
ac_clean_files=$ac_clean_files_save
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for suffix of object files" >&5
$as_echo_n "checking for suffix of object files... " >&6; }
-if test "${ac_cv_objext+set}" = set; then :
+if ${ac_cv_objext+:} false; then :
$as_echo_n "(cached) " >&6
else
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
@@ -2456,8 +2463,8 @@
{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
-as_fn_error "cannot compute suffix of object files: cannot compile
-See \`config.log' for more details." "$LINENO" 5; }
+as_fn_error $? "cannot compute suffix of object files: cannot compile
+See \`config.log' for more details" "$LINENO" 5; }
fi
rm -f conftest.$ac_cv_objext conftest.$ac_ext
fi
@@ -2467,7 +2474,7 @@
ac_objext=$OBJEXT
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are using the GNU C compiler" >&5
$as_echo_n "checking whether we are using the GNU C compiler... " >&6; }
-if test "${ac_cv_c_compiler_gnu+set}" = set; then :
+if ${ac_cv_c_compiler_gnu+:} false; then :
$as_echo_n "(cached) " >&6
else
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
@@ -2504,7 +2511,7 @@
ac_save_CFLAGS=$CFLAGS
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CC accepts -g" >&5
$as_echo_n "checking whether $CC accepts -g... " >&6; }
-if test "${ac_cv_prog_cc_g+set}" = set; then :
+if ${ac_cv_prog_cc_g+:} false; then :
$as_echo_n "(cached) " >&6
else
ac_save_c_werror_flag=$ac_c_werror_flag
@@ -2582,7 +2589,7 @@
fi
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $CC option to accept ISO C89" >&5
$as_echo_n "checking for $CC option to accept ISO C89... " >&6; }
-if test "${ac_cv_prog_cc_c89+set}" = set; then :
+if ${ac_cv_prog_cc_c89+:} false; then :
$as_echo_n "(cached) " >&6
else
ac_cv_prog_cc_c89=no
@@ -2680,7 +2687,7 @@
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for CmdInterpreter in -lOpenBUGS" >&5
$as_echo_n "checking for CmdInterpreter in -lOpenBUGS... " >&6; }
-if test "${ac_cv_lib_OpenBUGS_CmdInterpreter+set}" = set; then :
+if ${ac_cv_lib_OpenBUGS_CmdInterpreter+:} false; then :
$as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
@@ -2714,7 +2721,7 @@
fi
{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_OpenBUGS_CmdInterpreter" >&5
$as_echo "$ac_cv_lib_OpenBUGS_CmdInterpreter" >&6; }
-if test "x$ac_cv_lib_OpenBUGS_CmdInterpreter" = x""yes; then :
+if test "x$ac_cv_lib_OpenBUGS_CmdInterpreter" = xyes; then :
cat >>confdefs.h <<_ACEOF
#define HAVE_LIBOPENBUGS 1
_ACEOF
@@ -2722,27 +2729,19 @@
LIBS="-lOpenBUGS $LIBS"
else
- as_fn_error "\"Cannot load OpenBUGS library in ${OPENBUGS}/lib. Run R CMD INSTALL BRugs --configure-args='--with-openbugs=...'\"" "$LINENO" 5
+ as_fn_error $? "\"Cannot load OpenBUGS library in ${OPENBUGS}/lib. Run R CMD INSTALL BRugs --configure-args='--with-openbugs=...'\"" "$LINENO" 5
fi
LDFLAGS=${OLDFLAGS}
-VERSION=`echo "modelQuit()" | ${OPENBUGS}/bin/OpenBUGS | sed -ne "s/OpenBUGS version \(.*\) rev \(.*\)/\1/p"`
-if test `echo ${VERSION} |cut -d. -f1` -lt 3; then
- as_fn_error "Requires OpenBUGS version 3.2.1 or greater" "$LINENO" 5
-fi
-if test `echo ${VERSION} |cut -d. -f1` -eq 3 -a `echo ${VERSION} |cut -d. -f2` -lt 2 ; then
- as_fn_error "Requires OpenBUGS version 3.2.1 or greater" "$LINENO" 5
-fi
-
-if ${SOURCEINST} ; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: Found OpenBUGS installation from source package " >&5
-$as_echo "$as_me: Found OpenBUGS installation from source package " >&6;}
- OPENBUGSDOC=${OPENBUGS}/doc
+if test -d "${OPENBUGS}/share/doc/openbugs-${VERSION}" ; then
+ OPENBUGSDOC=${OPENBUGS}/share/doc/openbugs-${VERSION}
else
- { $as_echo "$as_me:${as_lineno-$LINENO}: Found OpenBUGS installation from binary package " >&5
-$as_echo "$as_me: Found OpenBUGS installation from binary package " >&6;}
- OPENBUGSDOC=${OPENBUGS}/share/doc/openbugs-${VERSION}
+ if test -d "${OPENBUGS}/share/doc/openbugs" ; then
+ OPENBUGSDOC=${OPENBUGS}/share/doc/openbugs
+ else
+ as_fn_error $? "OpenBUGS documentation directory not found in ${OPENBUGS}/share/doc" "$LINENO" 5
+ fi
fi
OPENBUGS=${OPENBUGS}/lib
@@ -2817,10 +2816,21 @@
:end' >>confcache
if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
if test -w "$cache_file"; then
- test "x$cache_file" != "x/dev/null" &&
+ if test "x$cache_file" != "x/dev/null"; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: updating cache $cache_file" >&5
$as_echo "$as_me: updating cache $cache_file" >&6;}
- cat confcache >$cache_file
+ if test ! -f "$cache_file" || test -h "$cache_file"; then
+ cat confcache >"$cache_file"
+ else
+ case $cache_file in #(
+ */* | ?:*)
+ mv -f confcache "$cache_file"$$ &&
+ mv -f "$cache_file"$$ "$cache_file" ;; #(
+ *)
+ mv -f confcache "$cache_file" ;;
+ esac
+ fi
+ fi
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: not updating unwritable cache $cache_file" >&5
$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;}
@@ -2872,6 +2882,7 @@
ac_libobjs=
ac_ltlibobjs=
+U=
for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
# 1. Remove the extension, and $U if already installed.
ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
@@ -2887,7 +2898,7 @@
-: ${CONFIG_STATUS=./config.status}
+: "${CONFIG_STATUS=./config.status}"
ac_write_fail=0
ac_clean_files_save=$ac_clean_files
ac_clean_files="$ac_clean_files $CONFIG_STATUS"
@@ -2988,6 +2999,7 @@
IFS=" "" $as_nl"
# Find who we are. Look in the path if we contain no directory separator.
+as_myself=
case $0 in #((
*[\\/]* ) as_myself=$0 ;;
*) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
@@ -3033,19 +3045,19 @@
(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
-# as_fn_error ERROR [LINENO LOG_FD]
-# ---------------------------------
+# as_fn_error STATUS ERROR [LINENO LOG_FD]
+# ----------------------------------------
# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
-# script with status $?, using 1 if that was 0.
+# script with STATUS, using 1 if that was 0.
as_fn_error ()
{
- as_status=$?; test $as_status -eq 0 && as_status=1
- if test "$3"; then
- as_lineno=${as_lineno-"$2"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
- $as_echo "$as_me:${as_lineno-$LINENO}: error: $1" >&$3
+ as_status=$1; test $as_status -eq 0 && as_status=1
+ if test "$4"; then
+ as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ $as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
fi
- $as_echo "$as_me: error: $1" >&2
+ $as_echo "$as_me: error: $2" >&2
as_fn_exit $as_status
} # as_fn_error
@@ -3241,7 +3253,7 @@
test -d "$as_dir" && break
done
test -z "$as_dirs" || eval "mkdir $as_dirs"
- } || test -d "$as_dir" || as_fn_error "cannot create directory $as_dir"
+ } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
} # as_fn_mkdir_p
@@ -3294,8 +3306,8 @@
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
-This file was extended by BRugs $as_me 0.7, which was
-generated by GNU Autoconf 2.65. Invocation command line was
+This file was extended by BRugs $as_me 0.8, which was
+generated by GNU Autoconf 2.68. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
CONFIG_HEADERS = $CONFIG_HEADERS
@@ -3347,11 +3359,11 @@
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
-BRugs config.status 0.7
-configured by $0, generated by GNU Autoconf 2.65,
+BRugs config.status 0.8
+configured by $0, generated by GNU Autoconf 2.68,
with options \\"\$ac_cs_config\\"
-Copyright (C) 2009 Free Software Foundation, Inc.
+Copyright (C) 2010 Free Software Foundation, Inc.
This config.status script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it."
@@ -3366,11 +3378,16 @@
while test $# != 0
do
case $1 in
- --*=*)
+ --*=?*)
ac_option=`expr "X$1" : 'X\([^=]*\)='`
ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
ac_shift=:
;;
+ --*=)
+ ac_option=`expr "X$1" : 'X\([^=]*\)='`
+ ac_optarg=
+ ac_shift=:
+ ;;
*)
ac_option=$1
ac_optarg=$2
@@ -3392,6 +3409,7 @@
$ac_shift
case $ac_optarg in
*\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
+ '') as_fn_error $? "missing file argument" ;;
esac
as_fn_append CONFIG_FILES " '$ac_optarg'"
ac_need_defaults=false;;
@@ -3402,7 +3420,7 @@
ac_cs_silent=: ;;
# This is an error.
- -*) as_fn_error "unrecognized option: \`$1'
+ -*) as_fn_error $? "unrecognized option: \`$1'
Try \`$0 --help' for more information." ;;
*) as_fn_append ac_config_targets " $1"
@@ -3453,7 +3471,7 @@
case $ac_config_target in
"src/Makevars") CONFIG_FILES="$CONFIG_FILES src/Makevars" ;;
- *) as_fn_error "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
+ *) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
esac
done
@@ -3474,9 +3492,10 @@
# after its creation but before its name has been assigned to `$tmp'.
$debug ||
{
- tmp=
+ tmp= ac_tmp=
trap 'exit_status=$?
- { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status
+ : "${ac_tmp:=$tmp}"
+ { test ! -d "$ac_tmp" || rm -fr "$ac_tmp"; } && exit $exit_status
' 0
trap 'as_fn_exit 1' 1 2 13 15
}
@@ -3484,12 +3503,13 @@
{
tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
- test -n "$tmp" && test -d "$tmp"
+ test -d "$tmp"
} ||
{
tmp=./conf$$-$RANDOM
(umask 077 && mkdir "$tmp")
-} || as_fn_error "cannot create a temporary directory in ." "$LINENO" 5
+} || as_fn_error $? "cannot create a temporary directory in ." "$LINENO" 5
+ac_tmp=$tmp
# Set up the scripts for CONFIG_FILES section.
# No need to generate them if there are no CONFIG_FILES.
@@ -3506,12 +3526,12 @@
fi
ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
- ac_cs_awk_cr='\r'
+ ac_cs_awk_cr='\\r'
else
ac_cs_awk_cr=$ac_cr
fi
-echo 'BEGIN {' >"$tmp/subs1.awk" &&
+echo 'BEGIN {' >"$ac_tmp/subs1.awk" &&
_ACEOF
@@ -3520,18 +3540,18 @@
echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' &&
echo "_ACEOF"
} >conf$$subs.sh ||
- as_fn_error "could not make $CONFIG_STATUS" "$LINENO" 5
-ac_delim_num=`echo "$ac_subst_vars" | grep -c '$'`
+ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
+ac_delim_num=`echo "$ac_subst_vars" | grep -c '^'`
ac_delim='%!_!# '
for ac_last_try in false false false false false :; do
. ./conf$$subs.sh ||
- as_fn_error "could not make $CONFIG_STATUS" "$LINENO" 5
+ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
if test $ac_delim_n = $ac_delim_num; then
break
elif $ac_last_try; then
- as_fn_error "could not make $CONFIG_STATUS" "$LINENO" 5
+ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
else
ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
fi
@@ -3539,7 +3559,7 @@
rm -f conf$$subs.sh
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
-cat >>"\$tmp/subs1.awk" <<\\_ACAWK &&
+cat >>"\$ac_tmp/subs1.awk" <<\\_ACAWK &&
_ACEOF
sed -n '
h
@@ -3587,7 +3607,7 @@
rm -f conf$$subs.awk
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
_ACAWK
-cat >>"\$tmp/subs1.awk" <<_ACAWK &&
+cat >>"\$ac_tmp/subs1.awk" <<_ACAWK &&
for (key in S) S_is_set[key] = 1
FS = ""
@@ -3619,21 +3639,29 @@
sed "s/$ac_cr\$//; s/$ac_cr/$ac_cs_awk_cr/g"
else
cat
-fi < "$tmp/subs1.awk" > "$tmp/subs.awk" \
- || as_fn_error "could not setup config files machinery" "$LINENO" 5
+fi < "$ac_tmp/subs1.awk" > "$ac_tmp/subs.awk" \
+ || as_fn_error $? "could not setup config files machinery" "$LINENO" 5
_ACEOF
-# VPATH may cause trouble with some makes, so we remove $(srcdir),
-# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
+# VPATH may cause trouble with some makes, so we remove sole $(srcdir),
+# ${srcdir} and @srcdir@ entries from VPATH if srcdir is ".", strip leading and
# trailing colons and then remove the whole line if VPATH becomes empty
# (actually we leave an empty line to preserve line numbers).
if test "x$srcdir" = x.; then
- ac_vpsub='/^[ ]*VPATH[ ]*=/{
-s/:*\$(srcdir):*/:/
-s/:*\${srcdir}:*/:/
-s/:*@srcdir@:*/:/
-s/^\([^=]*=[ ]*\):*/\1/
+ ac_vpsub='/^[ ]*VPATH[ ]*=[ ]*/{
+h
+s///
+s/^/:/
+s/[ ]*$/:/
+s/:\$(srcdir):/:/g
+s/:\${srcdir}:/:/g
+s/:@srcdir@:/:/g
+s/^:*//
s/:*$//
+x
+s/\(=[ ]*\).*/\1/
+G
+s/\n//
s/^[^=]*=[ ]*$//
}'
fi
@@ -3651,7 +3679,7 @@
esac
case $ac_mode$ac_tag in
:[FHL]*:*);;
- :L* | :C*:*) as_fn_error "invalid tag \`$ac_tag'" "$LINENO" 5;;
+ :L* | :C*:*) as_fn_error $? "invalid tag \`$ac_tag'" "$LINENO" 5;;
:[FH]-) ac_tag=-:-;;
:[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
esac
@@ -3670,7 +3698,7 @@
for ac_f
do
case $ac_f in
- -) ac_f="$tmp/stdin";;
+ -) ac_f="$ac_tmp/stdin";;
*) # Look for the file first in the build tree, then in the source tree
# (if the path is not absolute). The absolute path cannot be DOS-style,
# because $ac_f cannot contain `:'.
@@ -3679,7 +3707,7 @@
[\\/$]*) false;;
*) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
esac ||
- as_fn_error "cannot find input file: \`$ac_f'" "$LINENO" 5;;
+ as_fn_error 1 "cannot find input file: \`$ac_f'" "$LINENO" 5;;
esac
case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
as_fn_append ac_file_inputs " '$ac_f'"
@@ -3705,8 +3733,8 @@
esac
case $ac_tag in
- *:-:* | *:-) cat >"$tmp/stdin" \
- || as_fn_error "could not create $ac_file" "$LINENO" 5 ;;
+ *:-:* | *:-) cat >"$ac_tmp/stdin" \
+ || as_fn_error $? "could not create $ac_file" "$LINENO" 5 ;;
esac
;;
esac
@@ -3831,23 +3859,24 @@
s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
$ac_datarootdir_hack
"
-eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$tmp/subs.awk" >$tmp/out \
- || as_fn_error "could not create $ac_file" "$LINENO" 5
+eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$ac_tmp/subs.awk" \
+ >$ac_tmp/out || as_fn_error $? "could not create $ac_file" "$LINENO" 5
test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
- { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
- { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
+ { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } &&
+ { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \
+ "$ac_tmp/out"`; test -z "$ac_out"; } &&
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file contains a reference to the variable \`datarootdir'
-which seems to be undefined. Please make sure it is defined." >&5
+which seems to be undefined. Please make sure it is defined" >&5
$as_echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
-which seems to be undefined. Please make sure it is defined." >&2;}
+which seems to be undefined. Please make sure it is defined" >&2;}
- rm -f "$tmp/stdin"
+ rm -f "$ac_tmp/stdin"
case $ac_file in
- -) cat "$tmp/out" && rm -f "$tmp/out";;
- *) rm -f "$ac_file" && mv "$tmp/out" "$ac_file";;
+ -) cat "$ac_tmp/out" && rm -f "$ac_tmp/out";;
+ *) rm -f "$ac_file" && mv "$ac_tmp/out" "$ac_file";;
esac \
- || as_fn_error "could not create $ac_file" "$LINENO" 5
+ || as_fn_error $? "could not create $ac_file" "$LINENO" 5
;;
@@ -3862,7 +3891,7 @@
ac_clean_files=$ac_clean_files_save
test $ac_write_fail = 0 ||
- as_fn_error "write failure creating $CONFIG_STATUS" "$LINENO" 5
+ as_fn_error $? "write failure creating $CONFIG_STATUS" "$LINENO" 5
# configure is writing to config.log, and then calls config.status.
@@ -3883,7 +3912,7 @@
exec 5>>config.log
# Use ||, not &&, to avoid exiting from the if with $? = 1, which
# would make configure fail if this is the last instruction.
- $ac_cs_success || as_fn_exit $?
+ $ac_cs_success || as_fn_exit 1
fi
if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
@@ -3956,10 +3985,21 @@
:end' >>confcache
if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
if test -w "$cache_file"; then
- test "x$cache_file" != "x/dev/null" &&
+ if test "x$cache_file" != "x/dev/null"; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: updating cache $cache_file" >&5
$as_echo "$as_me: updating cache $cache_file" >&6;}
- cat confcache >$cache_file
+ if test ! -f "$cache_file" || test -h "$cache_file"; then
+ cat confcache >"$cache_file"
+ else
+ case $cache_file in #(
+ */* | ?:*)
+ mv -f confcache "$cache_file"$$ &&
+ mv -f "$cache_file"$$ "$cache_file" ;; #(
+ *)
+ mv -f confcache "$cache_file" ;;
+ esac
+ fi
+ fi
else
{ $as_echo "$as_me:${as_lineno-$LINENO}: not updating unwritable cache $cache_file" >&5
$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;}
@@ -4011,6 +4051,7 @@
ac_libobjs=
ac_ltlibobjs=
+U=
for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
# 1. Remove the extension, and $U if already installed.
ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
@@ -4026,7 +4067,7 @@
-: ${CONFIG_STATUS=./config.status}
+: "${CONFIG_STATUS=./config.status}"
ac_write_fail=0
ac_clean_files_save=$ac_clean_files
ac_clean_files="$ac_clean_files $CONFIG_STATUS"
@@ -4127,6 +4168,7 @@
IFS=" "" $as_nl"
# Find who we are. Look in the path if we contain no directory separator.
+as_myself=
case $0 in #((
*[\\/]* ) as_myself=$0 ;;
*) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
@@ -4172,19 +4214,19 @@
(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
-# as_fn_error ERROR [LINENO LOG_FD]
-# ---------------------------------
+# as_fn_error STATUS ERROR [LINENO LOG_FD]
+# ----------------------------------------
# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
-# script with status $?, using 1 if that was 0.
+# script with STATUS, using 1 if that was 0.
as_fn_error ()
{
- as_status=$?; test $as_status -eq 0 && as_status=1
- if test "$3"; then
- as_lineno=${as_lineno-"$2"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
- $as_echo "$as_me:${as_lineno-$LINENO}: error: $1" >&$3
+ as_status=$1; test $as_status -eq 0 && as_status=1
+ if test "$4"; then
+ as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ $as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
fi
- $as_echo "$as_me: error: $1" >&2
+ $as_echo "$as_me: error: $2" >&2
as_fn_exit $as_status
} # as_fn_error
@@ -4380,7 +4422,7 @@
test -d "$as_dir" && break
done
test -z "$as_dirs" || eval "mkdir $as_dirs"
- } || test -d "$as_dir" || as_fn_error "cannot create directory $as_dir"
+ } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
} # as_fn_mkdir_p
@@ -4433,8 +4475,8 @@
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
-This file was extended by BRugs $as_me 0.7, which was
-generated by GNU Autoconf 2.65. Invocation command line was
+This file was extended by BRugs $as_me 0.8, which was
+generated by GNU Autoconf 2.68. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
CONFIG_HEADERS = $CONFIG_HEADERS
@@ -4486,11 +4528,11 @@
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
-BRugs config.status 0.7
-configured by $0, generated by GNU Autoconf 2.65,
+BRugs config.status 0.8
+configured by $0, generated by GNU Autoconf 2.68,
with options \\"\$ac_cs_config\\"
-Copyright (C) 2009 Free Software Foundation, Inc.
+Copyright (C) 2010 Free Software Foundation, Inc.
This config.status script is free software; the Free Software Foundation
gives unlimited permission to copy, distribute and modify it."
@@ -4505,11 +4547,16 @@
while test $# != 0
do
case $1 in
- --*=*)
+ --*=?*)
ac_option=`expr "X$1" : 'X\([^=]*\)='`
ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
ac_shift=:
;;
+ --*=)
+ ac_option=`expr "X$1" : 'X\([^=]*\)='`
+ ac_optarg=
+ ac_shift=:
+ ;;
*)
ac_option=$1
ac_optarg=$2
@@ -4531,6 +4578,7 @@
$ac_shift
case $ac_optarg in
*\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
+ '') as_fn_error $? "missing file argument" ;;
esac
as_fn_append CONFIG_FILES " '$ac_optarg'"
ac_need_defaults=false;;
@@ -4541,7 +4589,7 @@
ac_cs_silent=: ;;
# This is an error.
- -*) as_fn_error "unrecognized option: \`$1'
+ -*) as_fn_error $? "unrecognized option: \`$1'
Try \`$0 --help' for more information." ;;
*) as_fn_append ac_config_targets " $1"
@@ -4593,7 +4641,7 @@
"src/Makevars") CONFIG_FILES="$CONFIG_FILES src/Makevars" ;;
"R/unix/zzz.R") CONFIG_FILES="$CONFIG_FILES R/unix/zzz.R" ;;
- *) as_fn_error "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
+ *) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
esac
done
@@ -4614,9 +4662,10 @@
# after its creation but before its name has been assigned to `$tmp'.
$debug ||
{
- tmp=
+ tmp= ac_tmp=
trap 'exit_status=$?
- { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status
+ : "${ac_tmp:=$tmp}"
+ { test ! -d "$ac_tmp" || rm -fr "$ac_tmp"; } && exit $exit_status
' 0
trap 'as_fn_exit 1' 1 2 13 15
}
@@ -4624,12 +4673,13 @@
{
tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
- test -n "$tmp" && test -d "$tmp"
+ test -d "$tmp"
} ||
{
tmp=./conf$$-$RANDOM
(umask 077 && mkdir "$tmp")
-} || as_fn_error "cannot create a temporary directory in ." "$LINENO" 5
+} || as_fn_error $? "cannot create a temporary directory in ." "$LINENO" 5
+ac_tmp=$tmp
# Set up the scripts for CONFIG_FILES section.
# No need to generate them if there are no CONFIG_FILES.
@@ -4646,12 +4696,12 @@
fi
ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
- ac_cs_awk_cr='\r'
+ ac_cs_awk_cr='\\r'
else
ac_cs_awk_cr=$ac_cr
fi
-echo 'BEGIN {' >"$tmp/subs1.awk" &&
+echo 'BEGIN {' >"$ac_tmp/subs1.awk" &&
_ACEOF
@@ -4660,18 +4710,18 @@
echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' &&
echo "_ACEOF"
} >conf$$subs.sh ||
- as_fn_error "could not make $CONFIG_STATUS" "$LINENO" 5
-ac_delim_num=`echo "$ac_subst_vars" | grep -c '$'`
+ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
+ac_delim_num=`echo "$ac_subst_vars" | grep -c '^'`
ac_delim='%!_!# '
for ac_last_try in false false false false false :; do
. ./conf$$subs.sh ||
- as_fn_error "could not make $CONFIG_STATUS" "$LINENO" 5
+ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
if test $ac_delim_n = $ac_delim_num; then
break
elif $ac_last_try; then
- as_fn_error "could not make $CONFIG_STATUS" "$LINENO" 5
+ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
else
ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
fi
@@ -4679,7 +4729,7 @@
rm -f conf$$subs.sh
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
-cat >>"\$tmp/subs1.awk" <<\\_ACAWK &&
+cat >>"\$ac_tmp/subs1.awk" <<\\_ACAWK &&
_ACEOF
sed -n '
h
@@ -4727,7 +4777,7 @@
rm -f conf$$subs.awk
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
_ACAWK
-cat >>"\$tmp/subs1.awk" <<_ACAWK &&
+cat >>"\$ac_tmp/subs1.awk" <<_ACAWK &&
for (key in S) S_is_set[key] = 1
FS = ""
@@ -4759,21 +4809,29 @@
sed "s/$ac_cr\$//; s/$ac_cr/$ac_cs_awk_cr/g"
else
cat
-fi < "$tmp/subs1.awk" > "$tmp/subs.awk" \
- || as_fn_error "could not setup config files machinery" "$LINENO" 5
+fi < "$ac_tmp/subs1.awk" > "$ac_tmp/subs.awk" \
+ || as_fn_error $? "could not setup config files machinery" "$LINENO" 5
_ACEOF
-# VPATH may cause trouble with some makes, so we remove $(srcdir),
-# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
+# VPATH may cause trouble with some makes, so we remove sole $(srcdir),
+# ${srcdir} and @srcdir@ entries from VPATH if srcdir is ".", strip leading and
# trailing colons and then remove the whole line if VPATH becomes empty
# (actually we leave an empty line to preserve line numbers).
if test "x$srcdir" = x.; then
- ac_vpsub='/^[ ]*VPATH[ ]*=/{
-s/:*\$(srcdir):*/:/
-s/:*\${srcdir}:*/:/
-s/:*@srcdir@:*/:/
-s/^\([^=]*=[ ]*\):*/\1/
+ ac_vpsub='/^[ ]*VPATH[ ]*=[ ]*/{
+h
+s///
+s/^/:/
+s/[ ]*$/:/
+s/:\$(srcdir):/:/g
+s/:\${srcdir}:/:/g
+s/:@srcdir@:/:/g
+s/^:*//
s/:*$//
+x
+s/\(=[ ]*\).*/\1/
+G
+s/\n//
s/^[^=]*=[ ]*$//
}'
fi
@@ -4791,7 +4849,7 @@
esac
case $ac_mode$ac_tag in
:[FHL]*:*);;
- :L* | :C*:*) as_fn_error "invalid tag \`$ac_tag'" "$LINENO" 5;;
+ :L* | :C*:*) as_fn_error $? "invalid tag \`$ac_tag'" "$LINENO" 5;;
:[FH]-) ac_tag=-:-;;
:[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
esac
@@ -4810,7 +4868,7 @@
for ac_f
do
case $ac_f in
- -) ac_f="$tmp/stdin";;
+ -) ac_f="$ac_tmp/stdin";;
*) # Look for the file first in the build tree, then in the source tree
# (if the path is not absolute). The absolute path cannot be DOS-style,
# because $ac_f cannot contain `:'.
@@ -4819,7 +4877,7 @@
[\\/$]*) false;;
*) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
esac ||
- as_fn_error "cannot find input file: \`$ac_f'" "$LINENO" 5;;
+ as_fn_error 1 "cannot find input file: \`$ac_f'" "$LINENO" 5;;
esac
case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
as_fn_append ac_file_inputs " '$ac_f'"
@@ -4845,8 +4903,8 @@
esac
case $ac_tag in
- *:-:* | *:-) cat >"$tmp/stdin" \
- || as_fn_error "could not create $ac_file" "$LINENO" 5 ;;
+ *:-:* | *:-) cat >"$ac_tmp/stdin" \
+ || as_fn_error $? "could not create $ac_file" "$LINENO" 5 ;;
esac
;;
esac
@@ -4971,23 +5029,24 @@
s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
$ac_datarootdir_hack
"
-eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$tmp/subs.awk" >$tmp/out \
- || as_fn_error "could not create $ac_file" "$LINENO" 5
+eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$ac_tmp/subs.awk" \
+ >$ac_tmp/out || as_fn_error $? "could not create $ac_file" "$LINENO" 5
test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
- { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
- { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
+ { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } &&
+ { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \
+ "$ac_tmp/out"`; test -z "$ac_out"; } &&
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file contains a reference to the variable \`datarootdir'
-which seems to be undefined. Please make sure it is defined." >&5
+which seems to be undefined. Please make sure it is defined" >&5
$as_echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
-which seems to be undefined. Please make sure it is defined." >&2;}
+which seems to be undefined. Please make sure it is defined" >&2;}
- rm -f "$tmp/stdin"
+ rm -f "$ac_tmp/stdin"
case $ac_file in
- -) cat "$tmp/out" && rm -f "$tmp/out";;
- *) rm -f "$ac_file" && mv "$tmp/out" "$ac_file";;
+ -) cat "$ac_tmp/out" && rm -f "$ac_tmp/out";;
+ *) rm -f "$ac_file" && mv "$ac_tmp/out" "$ac_file";;
esac \
- || as_fn_error "could not create $ac_file" "$LINENO" 5
+ || as_fn_error $? "could not create $ac_file" "$LINENO" 5
;;
@@ -5002,7 +5061,7 @@
ac_clean_files=$ac_clean_files_save
test $ac_write_fail = 0 ||
- as_fn_error "write failure creating $CONFIG_STATUS" "$LINENO" 5
+ as_fn_error $? "write failure creating $CONFIG_STATUS" "$LINENO" 5
# configure is writing to config.log, and then calls config.status.
@@ -5023,7 +5082,7 @@
exec 5>>config.log
# Use ||, not &&, to avoid exiting from the if with $? = 1, which
# would make configure fail if this is the last instruction.
- $ac_cs_success || as_fn_exit $?
+ $ac_cs_success || as_fn_exit 1
fi
if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
Modified: trunk/BRugs/configure.ac
===================================================================
--- trunk/BRugs/configure.ac 2012-07-23 17:47:46 UTC (rev 254)
+++ trunk/BRugs/configure.ac 2012-07-24 08:42:13 UTC (rev 255)
@@ -1,15 +1,5 @@
-AC_INIT([BRugs], [0.7])
+AC_INIT([BRugs], [0.8])
-## Work around the inconsistency between the installation destinations of the 3.2.1 source and binary packages.
-## Source installs library in $prefix/lib/OpenBUGS/lib, doc in $prefix/lib/OpenBUGS/doc.
-## Binaries install in standards-compliant locations $prefix/lib and $prefix/share/doc/openbugs-version respectively.
-## Look in all of these places.
-## Return OPENBUGS = $prefix/lib/OpenBUGS for source installations, and
-## OPENBUGS = $prefix for binary installations.
-## Return OPENBUGSDOC = $prefix/lib/OpenBUGS/doc for source installations,
-## and OPENBUGSDOC = $prefix/share/doc/openbugs-version for binary installations.
-## If user specifies -with-openbugs, this is interpreted for a source installation.
-
## TODO only runs on x86 Linux - give error on other unixes.
AC_PREFIX_DEFAULT(/usr/local)
@@ -17,46 +7,48 @@
AC_ARG_WITH([openbugs],
AC_HELP_STRING([--with-openbugs=PATH],
- [the location of OpenBUGS installed from the source package, by default /usr/local/lib/OpenBUGS]),
+ [the location of the OpenBUGS installation, by default /usr/local]),
[openbugs_path=$withval])
if test [ -n "$openbugs_path" ] ; then
OPENBUGS=${openbugs_path}
- SOURCEINST=true
else
if test [ "$prefix" = "NONE" ]; then
- AC_MSG_ERROR( [OpenBUGS not found. Install OpenBUGS 3.2.1 or later, or specify its location using, for example, R CMD INSTALL BRugs --configure-args='--with-openbugs=/usr/local/lib/OpenBUGS'] )
+ AC_MSG_ERROR( [OpenBUGS 3.2.2 or later not found. Install it, or specify its location using, for example, R CMD INSTALL BRugs --configure-args='--with-openbugs=/usr/local'] )
else
- if test [ -e ${prefix}/lib/OpenBUGS/lib/libOpenBUGS.so ] ; then
- OPENBUGS=${prefix}/lib/OpenBUGS
- SOURCEINST=true
- else
+ if test [ -e ${prefix}/lib/libOpenBUGS.so ] ; then
OPENBUGS=${prefix}
- SOURCEINST=false
+ elif test [ -e ${prefix}/lib/OpenBUGS/lib/libOpenBUGS.so ] ; then # for 3.2.1
+ OPENBUGS=${prefix}
fi
fi
fi
-OLDFLAGS=${LDFLAGS}
-LDFLAGS="-L${OPENBUGS}/lib -m32"
-AC_CHECK_LIB(OpenBUGS, CmdInterpreter, [],
- [AC_MSG_ERROR("Cannot load OpenBUGS library in ${OPENBUGS}/lib. Run R CMD INSTALL BRugs --configure-args='--with-openbugs=...'")])
-LDFLAGS=${OLDFLAGS}
-
VERSION=`echo "modelQuit()" | ${OPENBUGS}/bin/OpenBUGS | sed -ne "s/OpenBUGS version \(.*\) rev \(.*\)/\1/p"`
if test [`echo ${VERSION} |cut -d. -f1` -lt 3]; then
- AC_MSG_ERROR([Requires OpenBUGS version 3.2.1 or greater])
+ AC_MSG_ERROR([Requires OpenBUGS version 3.2.2 or greater])
fi
if test [ `echo ${VERSION} |cut -d. -f1` -eq 3 -a `echo ${VERSION} |cut -d. -f2` -lt 2 ]; then
- AC_MSG_ERROR([Requires OpenBUGS version 3.2.1 or greater])
+ AC_MSG_ERROR([Requires OpenBUGS version 3.2.2 or greater])
fi
+if test [ `echo ${VERSION} |cut -d. -f1` -eq 3 -a `echo ${VERSION} |cut -d. -f2` -eq 2 -a `echo ${VERSION} |cut -d. -f3` -lt 2 ]; then
+ AC_MSG_ERROR([Requires OpenBUGS version 3.2.2 or greater])
+fi
-if [ ${SOURCEINST} ] ; then
- AC_MSG_NOTICE( [Found OpenBUGS installation from source package] )
- OPENBUGSDOC=${OPENBUGS}/doc
-else
- AC_MSG_NOTICE( [Found OpenBUGS installation from binary package] )
+OLDFLAGS=${LDFLAGS}
+LDFLAGS="-L${OPENBUGS}/lib -m32"
+AC_CHECK_LIB(OpenBUGS, CmdInterpreter, [],
+ [AC_MSG_ERROR("Cannot load OpenBUGS library in ${OPENBUGS}/lib. Run R CMD INSTALL BRugs --configure-args='--with-openbugs=...'")])
+LDFLAGS=${OLDFLAGS}
+
+if test [ -d "${OPENBUGS}/share/doc/openbugs-${VERSION}" ] ; then
OPENBUGSDOC=${OPENBUGS}/share/doc/openbugs-${VERSION}
+else
+ if test [ -d "${OPENBUGS}/share/doc/openbugs" ] ; then
+ OPENBUGSDOC=${OPENBUGS}/share/doc/openbugs
+ else
+ AC_MSG_ERROR([OpenBUGS documentation directory not found in ${OPENBUGS}/share/doc])
+ fi
fi
OPENBUGS=${OPENBUGS}/lib
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