[Bugs-r-devel] SF.net SVN: bugs-r:[172] trunk/R2OpenBUGS

[<snt...@us...>]

Revision: 172
          http://bugs-r.svn.sourceforge.net/bugs-r/?rev=172&view=rev
Author:   snthomas99
Date:     2010-09-16 02:54:33 +0000 (Thu, 16 Sep 2010)

Log Message:
-----------
Corrected bug in bugs.log and corrected some documentation

Modified Paths:
--------------
    trunk/R2OpenBUGS/R/bugs.log.R
    trunk/R2OpenBUGS/man/bugs.data.Rd
    trunk/R2OpenBUGS/man/bugs.inits.Rd
    trunk/R2OpenBUGS/man/read.bugs.Rd

Modified: trunk/R2OpenBUGS/R/bugs.log.R
===================================================================
--- trunk/R2OpenBUGS/R/bugs.log.R	2010-09-14 15:19:26 UTC (rev 171)
+++ trunk/R2OpenBUGS/R/bugs.log.R	2010-09-16 02:54:33 UTC (rev 172)
@@ -29,7 +29,7 @@
     dimnames(m) <- list(row.names, col.names)
     return(m)
   }
-  stats <- extract(log.txt, "Node statistics")
-  DIC <- extract(log.txt, "DIC", skip=1, empty.left.col=FALSE)
+  stats <- extract(log.txt, "Summary statistics")
+  DIC <- extract(log.txt, "Deviance information", skip=0, empty.left.col=FALSE)
   list(stats=stats, DIC=DIC)
 }

Modified: trunk/R2OpenBUGS/man/bugs.data.Rd
===================================================================
--- trunk/R2OpenBUGS/man/bugs.data.Rd	2010-09-14 15:19:26 UTC (rev 171)
+++ trunk/R2OpenBUGS/man/bugs.data.Rd	2010-09-16 02:54:33 UTC (rev 172)
@@ -2,8 +2,7 @@
 \alias{bugs.data}
 \title{Writing input for OpenBUGS}
 
-\description{Write file for \pkg{OpenBUGS} to read - for
-  internal use.}
+\description{Write file for \pkg{OpenBUGS} to read.} 
 
 \usage{
 bugs.data(data, dir = getwd(), digits = 5, data.file = "data.txt")
@@ -23,6 +22,5 @@
     the data file is written}
 
 \seealso{The main function to be called by the user is \code{\link{bugs}}.}
-\keyword{internal}
 \keyword{file}
 \keyword{IO}

Modified: trunk/R2OpenBUGS/man/bugs.inits.Rd
===================================================================
--- trunk/R2OpenBUGS/man/bugs.inits.Rd	2010-09-14 15:19:26 UTC (rev 171)
+++ trunk/R2OpenBUGS/man/bugs.inits.Rd	2010-09-16 02:54:33 UTC (rev 172)
@@ -1,9 +1,9 @@
 \name{bugs.inits}
 \alias{bugs.inits}
-\title{Writing input for OpenBUGS - intended for internal use only}
+\title{Writing input for OpenBUGS }
 
 \description{Write files \file{inits1.txt}, \file{inits2.txt}, etc., in
-  the working directory for \pkg{OpenBUGS} to read - for internal use.}
+  the working directory for \pkg{OpenBUGS} to read }
 
 \usage{
 bugs.inits(inits, n.chains, digits,
@@ -23,6 +23,5 @@
     are written}
 
 \seealso{The main function to be called by the user is \code{\link{bugs}}.}
-\keyword{internal}
 \keyword{IO}
 \keyword{file}

Modified: trunk/R2OpenBUGS/man/read.bugs.Rd
===================================================================
--- trunk/R2OpenBUGS/man/read.bugs.Rd	2010-09-14 15:19:26 UTC (rev 171)
+++ trunk/R2OpenBUGS/man/read.bugs.Rd	2010-09-16 02:54:33 UTC (rev 172)
@@ -16,7 +16,7 @@
     \code{\link{bugs}} in call such as \code{bugs(....., codaPkg=TRUE,
     .....)}). Each of the files contains coda output for one chain
     produced by \pkg{OpenBUGS}, the \emph{directory} name of the corresponding
-    file \file{codaIndex.txt} is extracted from the first element of
+    file \file{CODAindex.txt} is extracted from the first element of
     \code{codafiles}.}
   \item{...}{further arguments to be passed to
     \code{\link[coda]{read.coda}}}


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