Re: pthreads+bproc (was Re: [BProc] Re: bpslave dies)

[Nicholas H. <he...@se...>]

On Wed, 9 Apr 2003 16:04:19 -0600
er...@he... wrote:

Ok -- here is another node. I tried to find the process information on the head node incase that helps. 
ps -zxf for node25 on the head node:
28460 ?        S      0:00 bpsh -n 25 subtaskInvoker /scratch/user/sfischer/slot_1/result /genomics/binf/scratch/dotsBuilds/nicTest/mus/similarity/fin
28462 ?        SW     0:00  \_ [subtaskInvoker]
28463 ?        SW     0:00      \_ [blastSimilarity]
11803 ?        SW     0:00          \_ [sh]
11804 ?        SW     0:00              \_ [blastx]
11823 ?        SW     0:00                  \_ [blastx]
11825 ?        SW     0:00                      \_ [blastx]

On the node before the kill:
10509 ?        S      0:00  \_ /bin/sh /proc/self/fd/3 /scratch/user/sfischer/slot_1/result /genomics/binf/scratch/dotsBuilds/nicTest/mus/similar
10510 ?        S      0:00      \_ /usr/bin/perl /home/sfischer/gushome/bin/blastSimilarity --blastBinDir /genomics/share/pkg/bio/wu-blast/curren
11825 ?        S      0:00          \_ sh -c /genomics/share/pkg/bio/wu-blast/current/blastx /scratch/user/sfischer/prodom.fsa seqTmp -wordmask=s
11826 ?        S      0:00              \_ /genomics/share/pkg/bio/wu-blast/current/blastx /scratch/user/sfischer/prodom.fsa seqTmp -wordmask seg
11839 ?        S      0:00                  \_ /genomics/share/pkg/bio/wu-blast/current/blastx /scratch/user/sfischer/prodom.fsa seqTmp -wordmask
11840 ?        S      0:00                      \_ /genomics/share/pkg/bio/wu-blast/current/blastx /scratch/user/sfischer/prodom.fsa seqTmp -word

Hrm -- This one seemed to have killed them all. 

With the head node information I managed  to trim the trace to
where the bpsh <...> started to the end.
Trace is at :http://www.liniac.upenn.edu/~henken/bproc/node25trace

One more after this -- just for fun :)
Nic
-- 
Nicholas Henke
Penguin Herder & Linux Cluster System Programmer
Liniac Project - Univ. of Pennsylvania