BPandP / Discussion / BP&P Q&A: error while reading tree

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Anonymous - 2015-06-17

Hi,

Something strange is happening when I try to run bpp and while its loading my tree.
Error message:
Error: check #seqs and tree: perhaps too many '('?.
The number of sequences and taxa is equal. When I open the tree in figtree it is working fine, it is the tree I want to use. It is however quit a higher number of species, 17, could this be the reason for the error message?

Thanks.

Hi, Something strange is happening when I try to run bpp and while its loading my tree. Error message: Error: check #seqs and tree: perhaps too many '('?. The number of sequences and taxa is equal. When I open the tree in figtree it is working fine, it is the tree I want to use. It is however quit a higher number of species, 17, could this be the reason for the error message? Thanks.

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Anonymous - 2017-01-03

Hi, I'm getting the same error message. I reduced my data set to 9 spp and two loci and still get the error. I'm sure it's blindingly obvious, but I can't work out what I'm doing wrong, could anyone help? The tree file works in Figtree. I've attached my sequence file and control file.
Please let me know if you need any more information.
Thanks!

Michaela

Hi, I'm getting the same error message. I reduced my data set to 9 spp and two loci and still get the error. I'm sure it's blindingly obvious, but I can't work out what I'm doing wrong, could anyone help? The tree file works in Figtree. I've attached my sequence file and control file. Please let me know if you need any more information. Thanks! Michaela

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- Rannala - 2017-01-03
  
  if you post your map file as well I will try running it.
  
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- Anonymous - 2020-03-05
  
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Anonymous - 2017-01-03

Thank you! Here's the Imap file.

Thank you! Here's the Imap file.

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Anonymous - 2017-01-10

Hi, just wondering if you've had a chance to run my file. Cheers, Michaela

Hi, just wondering if you've had a chance to run my file. Cheers, Michaela

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Anonymous - 2022-11-04

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error while reading tree

Bayesian MCMC algorithms for the analysis of phylogeographic DNA data

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error while reading tree

error while reading tree

Bayesian MCMC algorithms for the analysis of phylogeographic DNA data

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error while reading tree document.SUBSCRIPTION_OPTIONS = { "thing": "topic", "subscribed": false, "url": "subscribe", "icon": { "css": "fa fa-envelope-o" } };

error while reading tree