Bowtie / Feature Requests

Feature Requests Maximize Restore

# Sort A -> Z Sort Z -> A	Summary▾ Sort A -> Z Sort Z -> A	Milestone▾ Sort A -> Z Sort Z -> A Filter by Milestone	Status▾ Sort A -> Z Sort Z -> A Filter by Status	Owner▾ Sort A -> Z Sort Z -> A Filter by Owner	Created▾ Sort A -> Z Sort Z -> A	Updated▾ Sort A -> Z Sort Z -> A	Priority▾ Sort A -> Z Sort Z -> A
108	Zero penalty for first N nucleotides of SE reads	Next Release	open		2015-09-08	2015-09-08	5
107	Verify paired-end sequence names and mate numbers	Next Release	open		2015-04-30	2015-04-30	5
105	bowtie2 implement for index concatenation	Next Release	open	Ben Langmead	2014-07-21	2014-07-21	1
104	bowtie2 implement for index concatenation	Next Release	open		2014-07-21	2014-07-21	1
103	add Fink and Homebrew to distributions list	Next Release	open		2014-03-11	2014-03-11	5
102	Ability to modify -a behavior keeping only best alignments	Next Release	open		2013-11-19	2013-11-19	5
97	Replace std::map by std::unordered_map	None	open	Ben Langmead	2013-03-30	2013-03-30	5
96	Bowtie2 -- make summary output less confusing	None	open	Ben Langmead	2013-02-13	2013-02-13	5
93	Slight modification to incorporate methylation data	None	open	Ben Langmead	2012-11-19	2012-11-19	5
92	Raise error on multiple -x flags	None	open	Ben Langmead	2012-11-08	2012-11-08	5
91	Alignment position on reads	None	open	Ben Langmead	2012-10-15	2012-10-15	5
90	bowtie2 QUAL fields in -k or -a mode	None	open	Ben Langmead	2012-10-12	2012-10-12	5
88	Support for comma-separated filenames	None	open	Ben Langmead	2012-09-28	2012-09-28	5
87	ability to set initial seed placement	None	open	Ben Langmead	2012-09-11	2012-09-11	5
85	bowtie2(beta7) distinguish single and multiple best hits	None	open	Ben Langmead	2012-08-01	2012-08-01	5
83	unmatched	None	open	Ben Langmead	2012-07-28	2012-07-28	5
82	Selectively Mask bases within the fragment of only one of t	Next Release	open	Ben Langmead	2012-07-27	2012-07-27	5
81	Hi-C alignment	None	open	Ben Langmead	2012-07-23	2012-07-23	5
80	Read qualities in sam	None	open	Ben Langmead	2012-07-13	2012-07-13	5
79	File Descriptor Input from Command Line	None	open	Ben Langmead	2012-07-12	2012-07-12	5
78	bowtie2 - automatically detect FASTQ vs FASTA	Next Release	open	Ben Langmead	2012-06-09	2012-06-09	5
77	bowte2: maxmapped fastq output desired	None	open	Ben Langmead	2012-05-16	2012-05-16	5
76	bowtie2: NH and IH tags desired	None	open	Ben Langmead	2012-05-16	2012-05-16	5

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Feature Requests Maximize Restore