108 |
Zero penalty for first N nucleotides of SE reads |
Next Release |
open |
|
2015-09-08
|
2015-09-08
|
5 |
|
107 |
Verify paired-end sequence names and mate numbers |
Next Release |
open |
|
2015-04-30
|
2015-04-30
|
5 |
|
105 |
bowtie2 implement for index concatenation |
Next Release |
open |
Ben Langmead
|
2014-07-21
|
2014-07-21
|
1 |
|
104 |
bowtie2 implement for index concatenation |
Next Release |
open |
|
2014-07-21
|
2014-07-21
|
1 |
|
103 |
add Fink and Homebrew to distributions list |
Next Release |
open |
|
2014-03-11
|
2014-03-11
|
5 |
|
102 |
Ability to modify -a behavior keeping only best alignments |
Next Release |
open |
|
2013-11-19
|
2013-11-19
|
5 |
|
97 |
Replace std::map by std::unordered_map |
None |
open |
Ben Langmead
|
2013-03-30
|
2013-03-30
|
5 |
|
96 |
Bowtie2 -- make summary output less confusing |
None |
open |
Ben Langmead
|
2013-02-13
|
2013-02-13
|
5 |
|
93 |
Slight modification to incorporate methylation data |
None |
open |
Ben Langmead
|
2012-11-19
|
2012-11-19
|
5 |
|
92 |
Raise error on multiple -x flags |
None |
open |
Ben Langmead
|
2012-11-08
|
2012-11-08
|
5 |
|
91 |
Alignment position on reads |
None |
open |
Ben Langmead
|
2012-10-15
|
2012-10-15
|
5 |
|
90 |
bowtie2 QUAL fields in -k or -a mode |
None |
open |
Ben Langmead
|
2012-10-12
|
2012-10-12
|
5 |
|
88 |
Support for comma-separated filenames |
None |
open |
Ben Langmead
|
2012-09-28
|
2012-09-28
|
5 |
|
87 |
ability to set initial seed placement |
None |
open |
Ben Langmead
|
2012-09-11
|
2012-09-11
|
5 |
|
85 |
bowtie2(beta7) distinguish single and multiple best hits |
None |
open |
Ben Langmead
|
2012-08-01
|
2012-08-01
|
5 |
|
83 |
unmatched |
None |
open |
Ben Langmead
|
2012-07-28
|
2012-07-28
|
5 |
|
82 |
Selectively Mask bases within the fragment of only one of t |
Next Release |
open |
Ben Langmead
|
2012-07-27
|
2012-07-27
|
5 |
|
81 |
Hi-C alignment |
None |
open |
Ben Langmead
|
2012-07-23
|
2012-07-23
|
5 |
|
80 |
Read qualities in sam |
None |
open |
Ben Langmead
|
2012-07-13
|
2012-07-13
|
5 |
|
79 |
File Descriptor Input from Command Line |
None |
open |
Ben Langmead
|
2012-07-12
|
2012-07-12
|
5 |
|
78 |
bowtie2 - automatically detect FASTQ vs FASTA |
Next Release |
open |
Ben Langmead
|
2012-06-09
|
2012-06-09
|
5 |
|
77 |
bowte2: maxmapped fastq output desired |
None |
open |
Ben Langmead
|
2012-05-16
|
2012-05-16
|
5 |
|
76 |
bowtie2: NH and IH tags desired |
None |
open |
Ben Langmead
|
2012-05-16
|
2012-05-16
|
5 |
|