encountered internal bowtie 2 exception (#1)

jane
2012-07-05
2013-06-05
  • jane

    jane - 2012-07-05

    when i run bowtie2 -p 8 -sam index_file_name -1 forward.fq -2 reverse.fq output_handle I get a error saying encountered internal bowtie 2 exception(#1)

    anyone know how to get around this?

    Thanks

     
  • jane

    jane - 2012-07-05

    if I remove the -p and -sam i can get it to work.

     

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