Reporting policy of equally good alignments

2011-03-25
2013-06-05
  • Nobody/Anonymous

    Hello

    If a reference sequence contains both the sense and antisense sequence of a feature (e.g. a hairpin), does bowtie randomly select the alignment to report for a perfectly matching read, or does it have a preference for one strand or the other (e.g. sense over antisense)?

    Thanks,
    ken

     
  • Nobody/Anonymous

    9XNCZN I really liked your blog article.Really looking forward to read more. Great.

     
  • Nobody/Anonymous

    Say, you got a nice blog. Much obliged.

     
  • Nobody/Anonymous

    fvj1Q4 Enjoyed every bit of your blog.Thanks Again. Great.

     
  • Nobody/Anonymous

    G7okph Awesome blog.Much thanks again. Want more.

     
  • Nobody/Anonymous

    A51OD0 Thanks so much for the blog.Much thanks again. Really Cool.

     
  • Nobody/Anonymous

    lz4fb3 Im grateful for the blog article.Thanks Again. Much obliged.

     

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