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# Summary Milestone Status Owner Created Updated Priority
359 (ERR): bowtie2-align died with signal 7 (BUS) (core dumped) v0.9.0 open 2019-06-25 2019-06-25 5  
358 Unaligned File Request Triggers Bowtie2 to Fail v0.9.0 open 2019-06-24 2019-07-01 5  
357 Bowtie --nofw, --norc not correct? v0.9.0 open Ben Langmead 2018-06-04 2018-06-04 9  
356 bowtie2 Segmentation fault: 11 v0.9.0 open 2018-05-02 2018-05-02 5  
355 Crossbow web interface is not working. v0.9.0 open Ben Langmead 2017-08-11 2017-08-11 5  
354 bowtie-build 1.2.1.1 does not auto-detect large genomes v0.9.0 open 2017-06-20 2017-06-20 5  
353 2.3.1 compilation error v0.9.0 open 2017-03-21 2017-03-21 5  
352 error when Bowtie2 installation v0.9.0 open 2017-03-21 2017-04-07 5  
350 Confuses quality score with read name when quality starts with @ v0.9.0 open 2016-09-07 2016-09-07 5  
349 Indexing a reference genome error v0.9.0 open 2016-04-14 2020-09-06 5  
348 New format index files of bowtie2 v.2.2.8 v0.9.0 open 2016-03-18 2016-03-18 5  
347 bowtie 2.2.7 will not run on OSX 10.10.5 (macports) v0.9.0 open 2016-02-19 2016-02-23 5  
346 Colorspace Error v0.9.0 open 2016-02-07 2016-02-07 5  
344 local mode alignments with N's in the reference v0.9.0 open 2016-01-07 2016-01-07 5  
343 bowtie 1.1.2 - wrong alignment position when --best option used with large (ebwtl) index v0.9.0 open 2015-12-07 2015-12-07 5  
341 bowtie fails to find perfect match (paired-end) v0.9.0 open 2015-08-14 2015-08-14 1  
340 bowtie2 generates wrong length in SAM/BAM header v0.9.0 open 2015-08-06 2015-08-06 5  
338 Bowtie not finding reverse complementary match v0.9.0 open 2015-06-29 2015-07-09 5  
337 Bowtie2 Mapping Inconsistency v0.9.0 open 2015-06-29 2015-07-11 5  
336 bad_alloc Bowtie 2.2.5 v0.9.0 open 2015-06-05 2015-08-10 1  
332 paired-end bowtie with --all --try-hard doesn't report all possibilities v0.9.0 open 2015-04-03 2015-04-03 2  
330 Incorrect mapping positions/TLEN field Bowtie2 (2.2.4) v0.9.0 open 2015-02-25 2015-02-25 5  
328 Incorrect TLEN sign for reverse complement paired reads? v0.9.0 open 2015-02-11 2015-02-17 5  
326 Bowtie 1.1.1 hangs when run on indexes built on databases >15GB v0.9.0 open 2015-01-06 2015-02-17 5  
323 Mapping rate anomaly for fragments slightly greater than maxins v0.9.0 open 2014-11-21 2014-11-24 5  
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