Activity for BioPPSy
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BioPPSy released /sublimation.zip
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Michael Luke Walker committed [439e53]
Corrected alteration of default values for learningRate, momentum and
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Reduced default learning speed of MultilayerPerceptron by two orders of
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Fixed serious bug in which changes to SupportVectorRegression regularisation
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Debugged
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DEBUGGED: Rsq in weka now correlationCoefficient square
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Added calculateB() to SupportVectorRBF.java to provide measure of feature
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Put default calculateB() in SupportVectorRegression.java which is
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Implemented/debugged inclusion of mean and relative absolute error, and
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Debugged calculation of Rsq in weka.java now from correlationCoefficient
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Generated javadoc for new algorithms and altered modules - long overdue
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Replaced COEFFICIENTS with WEIGHTS or similar in AlgPanel for non-linear
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Converted algorithm PLS.java to use standard OptionsDialog GUI and
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Added SupportVectorRBF.java as subclass of SupportVectorRegression.
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Updated README, CHANGELOG and ADD_ALGORITHM files, added ADD_SVR, and
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Corrected loading of algorithms so that labels are shown in human
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SupportVectorRegression is an abstract subclass of Weka.
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Defined AbstractFormatterFactory so that Format of double.class variable in
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Defined SupportVectorDefault as subclass of SupportVectorRegression.
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Implemented SupportVectorRegression so that getProperties is called from
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Fixed broken link between svr and weka.model . getOption and setOption working for model, kernel and optimizer. Error generating entries from optionsDialog.JSpinner caught.
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Added epochs and threshold to MultilayerPerceptron.java and degeneralised tolerance. SVM restricted to default optimizer for now
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getLabel() and getter and setter functions for SupportVectorRegression.java added. Do not generalise seed to weka as type varies between methods (int vs double)
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Added code to get and set options in SMOreg
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Added Weka.java as a superclass of MultilayerPerceptron and
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Added SupportVectorRegression.java
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Corrected bug where properties from multilayerPerceptron were not updated
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Moved assigning default values of Perceptron.java to defaultNewProperties()
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Renamed PerceptronOptionsDialog.java to OptionsDialog.java .
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Implemented PerceptionOptionsDialog.java which generates optionsDialog
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PerceptronOptionsDialog() now generates GUI for...
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Begun introduction of DocumentListener to detec...
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Completed generation of panel for inputting dou...
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Functions added to further generic OptionsDialo...
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Work has begun on code to generate option dialo...
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Implemented saving and reloading of model in Pe...
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Improved PLSoptionsDialog so that property chan...
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Perceptron.java now runs multilayerPerceptron (...
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Corrected implementation of loadModel() and sav...
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Reboot of BioPPsy repository to fix problems wi...
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M Walker committed [cbe45e]
Committer: mlwalker <mlwalker@magnesium.chem.l...
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Algorithm class changed to abstract class and M...
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8/12/16 Submission so far have just had bloat removed from the code. I shall soon...
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Removed some redundant files from bioppsy
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Removed duplicate folders resources/smartsEvalu...
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Removed duplicate joelib folders linux/, window...
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Removed duplicate folder Acme from bioppsy/lib
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Removed taglet/, text/, database/ and image/ fo...
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Removed duplicate wsi folder from bioppsy/lib/s...
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Deleted .class files in bioppsy/lib/tests/ as p...
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Initial commit
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