[Bio2rdf-bugs] [ bio2rdf-Bugs-2802380 ] go:0005488 still strange?

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Bugs item #2802380, was opened at 2009-06-07 12:52
Message generated for change (Comment added) made by p_ansell
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Category: None
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: michael grobe (dgrobe)
Assigned to: Nobody/Anonymous (nobody)
Summary: go:0005488 still strange?

Initial Comment:
Ptter: 

Sorry i didn't better describe my problem; can't fix it if i can't show it's broken
 (or that it appears broken in this case).

At quebec.bio2rdf.org/sparql, i do:

select *
where
{
   <http://bio2rdf.org/go:0004003> 
      <http://bio2rdf.org/bio2rdf#isA> 
          $o
}

and get its 3 parent categories back, but if i do the same query on, say, go:0005488, i get nothing back.

As i looked at this some more, it turned out that i lost the upward links for all three parents of go:0004003 after one or several successful links.

but other stuff confuses me too.  for example:

if i do:

select *
where
{
   <http://bio2rdf.org/go:0004003> 
       $p 
          $o
}
limit 1000

and examine the predicates, i see 3 #isA predicates, but if i look at 5488, i see no #isA predicates.

I hope this is a little clearer, and thanks,

Michael Grobe
Indiana University

----------------------------------------------------------------------

>Comment By: Peter Ansell (p_ansell)
Date: 2009-06-09 09:23

Message:
The quebec.bio2rdf.org/sparql server is reasonably out of date. It hasn't
been updated recently.

If you want to query GO you would be better using the
go.bio2rdf.org/sparql endpoint, or downloading the source file from
http://quebec.bio2rdf.org/download/n3/go.n3.gz and putting it into your
local rdf store.



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