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bio2rdf-svncommits
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From: <p_a...@us...> - 2009-07-30 23:00:39
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Revision: 643
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=643&view=rev
Author: p_ansell
Date: 2009-07-30 23:00:32 +0000 (Thu, 30 Jul 2009)
Log Message:
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create primary and secondary reverseconstruct versions
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2009-08-01 07:04:35
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Revision: 645
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=645&view=rev
Author: p_ansell
Date: 2009-08-01 07:04:20 +0000 (Sat, 01 Aug 2009)
Log Message:
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fix behaviour of default providers so they have to be assigned to queries before they respond
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/templates/endpoints.vm
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From: <p_a...@us...> - 2009-08-01 07:59:08
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Revision: 646
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=646&view=rev
Author: p_ansell
Date: 2009-08-01 07:59:00 +0000 (Sat, 01 Aug 2009)
Log Message:
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allow alternative namespace prefixes
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
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From: <p_a...@us...> - 2009-08-04 00:03:19
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Revision: 658
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=658&view=rev
Author: p_ansell
Date: 2009-08-04 00:03:07 +0000 (Tue, 04 Aug 2009)
Log Message:
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remove some providers that have been giving errors consistently
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-08-09 06:03:54
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Revision: 664
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=664&view=rev
Author: p_ansell
Date: 2009-08-09 06:03:42 +0000 (Sun, 09 Aug 2009)
Log Message:
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add isPageable support to configuration file and fix namespace on a provider because it no longer exists
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2009-08-13 00:33:34
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Revision: 679
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=679&view=rev
Author: p_ansell
Date: 2009-08-13 00:33:14 +0000 (Thu, 13 Aug 2009)
Log Message:
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add two more unsafe queries for linksns and linkstonamespace queries so that they can be used with the DBpedia pagelinks collection
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/templates/header.vm
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From: <p_a...@us...> - 2009-08-21 04:54:14
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Revision: 686
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=686&view=rev
Author: p_ansell
Date: 2009-08-21 04:54:08 +0000 (Fri, 21 Aug 2009)
Log Message:
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more patches to make the contextpath work
Modified Paths:
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trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/templates/header.vm
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From: <p_a...@us...> - 2009-09-04 05:10:00
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Revision: 701
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=701&view=rev
Author: p_ansell
Date: 2009-09-04 05:09:53 +0000 (Fri, 04 Sep 2009)
Log Message:
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add fasta provider for pdb
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2009-09-05 08:58:19
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Revision: 705
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=705&view=rev
Author: p_ansell
Date: 2009-09-05 08:58:13 +0000 (Sat, 05 Sep 2009)
Log Message:
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fix pubchem inchi support
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2009-09-13 06:19:33
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Revision: 729
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=729&view=rev
Author: p_ansell
Date: 2009-09-13 06:19:24 +0000 (Sun, 13 Sep 2009)
Log Message:
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fix references that were broken by the replacements
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-09-14 00:49:44
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Revision: 734
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=734&view=rev
Author: p_ansell
Date: 2009-09-14 00:49:39 +0000 (Mon, 14 Sep 2009)
Log Message:
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change logging levels and try to clean up urlrewrite.xml a little
Modified Paths:
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trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2009-10-26 00:59:11
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Revision: 758
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=758&view=rev
Author: p_ansell
Date: 2009-10-26 00:59:01 +0000 (Mon, 26 Oct 2009)
Log Message:
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fis provider inclusion of query
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2009-10-26 01:19:06
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Revision: 761
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=761&view=rev
Author: p_ansell
Date: 2009-10-26 01:18:55 +0000 (Mon, 26 Oct 2009)
Log Message:
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hide the debugging messages, but leave them in the HTML file behind the scenes
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/templates/page.vm
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From: <p_a...@us...> - 2009-10-29 03:47:43
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Revision: 772
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=772&view=rev
Author: p_ansell
Date: 2009-10-29 03:47:35 +0000 (Thu, 29 Oct 2009)
Log Message:
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reduce logging level, add beginnings of label fetch and cache code and fix up the medicare provider code
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-11-03 07:43:59
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Revision: 774
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=774&view=rev
Author: p_ansell
Date: 2009-11-03 07:43:48 +0000 (Tue, 03 Nov 2009)
Log Message:
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add in support for a nmrshiftdb_bib namespace along with a rule and changes to the relevant providers
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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From: <p_a...@us...> - 2009-11-03 10:26:42
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Revision: 778
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=778&view=rev
Author: p_ansell
Date: 2009-11-03 10:26:35 +0000 (Tue, 03 Nov 2009)
Log Message:
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update one side of the doi to spectrum position so that spectrums appear on the relevant DOI page
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2009-11-10 02:34:27
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Revision: 784
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=784&view=rev
Author: p_ansell
Date: 2009-11-10 02:34:18 +0000 (Tue, 10 Nov 2009)
Log Message:
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provider and query fixes to make unsafe queries available for any namespace, not practical to restrict the namespaces centrally
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2009-11-18 23:40:59
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Revision: 788
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=788&view=rev
Author: p_ansell
Date: 2009-11-18 23:40:48 +0000 (Wed, 18 Nov 2009)
Log Message:
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make irefindex work
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-11-20 00:19:23
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Revision: 793
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=793&view=rev
Author: p_ansell
Date: 2009-11-20 00:15:37 +0000 (Fri, 20 Nov 2009)
Log Message:
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add autogenerated provider insertion file, and split out the html and license providers from the others so they are easier to maintain
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
Added Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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From: <p_a...@us...> - 2009-11-24 22:50:50
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Revision: 798
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=798&view=rev
Author: p_ansell
Date: 2009-11-24 22:50:43 +0000 (Tue, 24 Nov 2009)
Log Message:
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fix bugs
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
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From: <p_a...@us...> - 2009-11-26 01:23:48
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Revision: 800
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=800&view=rev
Author: p_ansell
Date: 2009-11-26 01:23:41 +0000 (Thu, 26 Nov 2009)
Log Message:
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changeover ontology URI's from /ns/Namespace: to /Namespace_ontology:
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2009-11-30 02:58:36
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Revision: 806
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=806&view=rev
Author: p_ansell
Date: 2009-11-30 02:58:30 +0000 (Mon, 30 Nov 2009)
Log Message:
-----------
add more providers and namespaces and rdfrules
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
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From: <p_a...@us...> - 2009-11-30 04:12:14
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Revision: 807
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=807&view=rev
Author: p_ansell
Date: 2009-11-30 04:12:08 +0000 (Mon, 30 Nov 2009)
Log Message:
-----------
add some more html providers
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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From: <p_a...@us...> - 2009-11-30 04:36:59
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Revision: 808
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=808&view=rev
Author: p_ansell
Date: 2009-11-30 04:36:52 +0000 (Mon, 30 Nov 2009)
Log Message:
-----------
add more namespaces and html providers
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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From: <p_a...@us...> - 2009-11-30 05:03:48
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Revision: 809
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=809&view=rev
Author: p_ansell
Date: 2009-11-30 05:03:42 +0000 (Mon, 30 Nov 2009)
Log Message:
-----------
add more html providers
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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