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bio2rdf-svncommits
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From: <p_a...@us...> - 2009-11-30 05:07:05
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Revision: 810
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=810&view=rev
Author: p_ansell
Date: 2009-11-30 05:06:54 +0000 (Mon, 30 Nov 2009)
Log Message:
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update the autogenerated list
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
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From: <p_a...@us...> - 2009-12-10 10:31:45
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Revision: 815
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=815&view=rev
Author: p_ansell
Date: 2009-12-10 10:31:33 +0000 (Thu, 10 Dec 2009)
Log Message:
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add go xml provider and add more license namespaces to GO and Sider
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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From: <p_a...@us...> - 2009-12-10 23:28:55
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Revision: 816
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=816&view=rev
Author: p_ansell
Date: 2009-12-10 23:28:45 +0000 (Thu, 10 Dec 2009)
Log Message:
-----------
add more licenses
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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From: <p_a...@us...> - 2009-12-11 06:41:12
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Revision: 820
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=820&view=rev
Author: p_ansell
Date: 2009-12-11 06:41:05 +0000 (Fri, 11 Dec 2009)
Log Message:
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update the autogenerated file, and remove extraneous statements from the license definitions
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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From: <p_a...@us...> - 2010-01-17 23:17:57
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Revision: 821
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=821&view=rev
Author: p_ansell
Date: 2010-01-17 23:17:43 +0000 (Sun, 17 Jan 2010)
Log Message:
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fix up RDFa display
Modified Paths:
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trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/templates/proptable.vm
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From: <p_a...@us...> - 2010-02-04 02:35:17
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Revision: 828
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=828&view=rev
Author: p_ansell
Date: 2010-02-04 01:13:33 +0000 (Thu, 04 Feb 2010)
Log Message:
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add in chempedia substance and chempedia substance name support
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-ruletests-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2010-02-08 05:23:05
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Revision: 832
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=832&view=rev
Author: p_ansell
Date: 2010-02-08 05:22:59 +0000 (Mon, 08 Feb 2010)
Log Message:
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add more html providers
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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From: <p_a...@us...> - 2010-02-08 05:31:23
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Revision: 833
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=833&view=rev
Author: p_ansell
Date: 2010-02-08 05:31:17 +0000 (Mon, 08 Feb 2010)
Log Message:
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add ecocyc html provider
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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From: <p_a...@us...> - 2010-02-09 03:56:07
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Revision: 834
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=834&view=rev
Author: p_ansell
Date: 2010-02-09 03:56:01 +0000 (Tue, 09 Feb 2010)
Log Message:
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add more html providers and some of the missing namespace entries for current providers
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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From: <p_a...@us...> - 2010-02-09 04:03:27
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Revision: 835
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=835&view=rev
Author: p_ansell
Date: 2010-02-09 04:03:22 +0000 (Tue, 09 Feb 2010)
Log Message:
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add ctd license reference
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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From: <p_a...@us...> - 2010-02-09 04:08:21
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Revision: 836
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=836&view=rev
Author: p_ansell
Date: 2010-02-09 04:08:15 +0000 (Tue, 09 Feb 2010)
Log Message:
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add mutdb license provider
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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From: <p_a...@us...> - 2010-03-25 06:02:54
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Revision: 839
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=839&view=rev
Author: p_ansell
Date: 2010-03-25 06:02:48 +0000 (Thu, 25 Mar 2010)
Log Message:
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add biocarta namespaces and rules and providers and make debugging code more informative in settings if there is an rdf parse exception
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
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From: <p_a...@us...> - 2010-03-29 04:08:56
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Revision: 840
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=840&view=rev
Author: p_ansell
Date: 2010-03-29 04:08:50 +0000 (Mon, 29 Mar 2010)
Log Message:
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add minor extensions to the model, including formal, optional, link between normalisation rules and namespaces they may be relevant to
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
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From: <p_a...@us...> - 2010-04-14 04:58:50
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Revision: 846
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=846&view=rev
Author: p_ansell
Date: 2010-04-14 04:58:44 +0000 (Wed, 14 Apr 2010)
Log Message:
-----------
make the license work for irefindex
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2010-04-15 04:25:20
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Revision: 847
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=847&view=rev
Author: p_ansell
Date: 2010-04-15 04:25:14 +0000 (Thu, 15 Apr 2010)
Log Message:
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modify some providers
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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From: <p_a...@us...> - 2010-04-19 22:34:44
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Revision: 851
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=851&view=rev
Author: p_ansell
Date: 2010-04-19 22:34:37 +0000 (Mon, 19 Apr 2010)
Log Message:
-----------
add fixes for affymetrix taxon for homo sapiens and make it possible to resolve some affymetrix_resource items while still normalising the rest of the information by taking out the forward normalisation part of the hash to colon rule and making it a separate rule
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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From: <p_a...@us...> - 2010-04-20 00:51:18
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Revision: 853
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=853&view=rev
Author: p_ansell
Date: 2010-04-20 00:51:12 +0000 (Tue, 20 Apr 2010)
Log Message:
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add release namespace, and tune up the uniparc provider
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2010-05-07 05:12:55
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Revision: 864
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=864&view=rev
Author: p_ansell
Date: 2010-05-07 05:12:49 +0000 (Fri, 07 May 2010)
Log Message:
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fix up some more errors and add the regex type URI to each of the current normalisation rules
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/RegexNormalisationRule.java
trunk/src/war/WEB-INF/src/org/queryall/NormalisationRule.java
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From: <p_a...@us...> - 2010-05-18 03:09:20
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Revision: 868
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=868&view=rev
Author: p_ansell
Date: 2010-05-18 03:09:13 +0000 (Tue, 18 May 2010)
Log Message:
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make gdb more functional to avoid not returning results for gdb:GDB URIs where possible
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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From: <p_a...@us...> - 2010-05-18 03:43:18
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Revision: 869
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=869&view=rev
Author: p_ansell
Date: 2010-05-18 03:43:12 +0000 (Tue, 18 May 2010)
Log Message:
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add more providers and rdfrules
Modified Paths:
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trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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From: <p_a...@us...> - 2010-05-26 02:19:33
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Revision: 874
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=874&view=rev
Author: p_ansell
Date: 2010-05-26 02:19:27 +0000 (Wed, 26 May 2010)
Log Message:
-----------
fix up dbpedia issues by making up a new namespace for dbpedia categories since it appears that the colon after Category: in dbpedia URIs will never be encoded even though the rest of the URI is percent encoded for colons and other reserved characters
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
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From: <p_a...@us...> - 2010-05-28 00:05:47
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Revision: 878
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=878&view=rev
Author: p_ansell
Date: 2010-05-28 00:05:39 +0000 (Fri, 28 May 2010)
Log Message:
-----------
fix some provider issues
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2010-06-04 05:50:59
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Revision: 882
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=882&view=rev
Author: p_ansell
Date: 2010-06-04 05:50:53 +0000 (Fri, 04 Jun 2010)
Log Message:
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add two new providers and namespaces from the new bioontology.org/sparql endpoint
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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From: <p_a...@us...> - 2010-06-08 00:46:14
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Revision: 883
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=883&view=rev
Author: p_ansell
Date: 2010-06-08 00:46:08 +0000 (Tue, 08 Jun 2010)
Log Message:
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remove mquter providers that won't be up any more
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2010-06-08 02:55:24
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Revision: 886
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=886&view=rev
Author: p_ansell
Date: 2010-06-08 02:55:17 +0000 (Tue, 08 Jun 2010)
Log Message:
-----------
also need to workaround qut for the new obo endpoint
Modified Paths:
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trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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