Thread: [Bio2rdf-svncommits] SF.net SVN: bio2rdf:[824] trunk (Page 4)
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From: <p_a...@us...> - 2010-01-26 23:04:49
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Revision: 824
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=824&view=rev
Author: p_ansell
Date: 2010-01-26 23:04:40 +0000 (Tue, 26 Jan 2010)
Log Message:
-----------
add japan mirror to build.xml
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2010-02-03 23:38:59
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Revision: 827
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=827&view=rev
Author: p_ansell
Date: 2010-02-03 23:38:51 +0000 (Wed, 03 Feb 2010)
Log Message:
-----------
add new pipes and providers and update sesame to latest version
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/src/bio2rdf_similar_drugbank_drugs_by_drugbank_targets.pipe
trunk/src/war/bio2rdfpipes.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/lib/openrdf-sesame-2.3.1-onejar.jar
trunk/src/war/WEB-INF/src/bio2rdf_geneid_to_hgnc_to_uniprot.pipe
trunk/src/war/WEB-INF/src/bio2rdf_geneid_to_hgnc_to_uniprot_to_drugbank.pipe
Removed Paths:
-------------
trunk/src/war/WEB-INF/lib/openrdf-sesame-2.2.4-onejar.jar
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From: <p_a...@us...> - 2010-02-25 09:21:38
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Revision: 837
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=837&view=rev
Author: p_ansell
Date: 2010-02-25 09:21:30 +0000 (Thu, 25 Feb 2010)
Log Message:
-----------
change the pubmed provider, and update some pipes
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/bio2rdf_gi_geneid_iproclass.pipe
trunk/src/war/bio2rdfpipes.jsp
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From: <p_a...@us...> - 2010-05-11 00:07:26
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Revision: 866
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=866&view=rev
Author: p_ansell
Date: 2010-05-11 00:07:19 +0000 (Tue, 11 May 2010)
Log Message:
-----------
fix some issues with the way normalisation rules were being parsed and output to RDF so that version 2 will work properly, but version 3 is now the default for the package
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/RegexNormalisationRule.java
trunk/src/war/WEB-INF/src/org/queryall/NormalisationRule.java
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From: <p_a...@us...> - 2010-05-25 23:38:30
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Revision: 871
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=871&view=rev
Author: p_ansell
Date: 2010-05-25 23:38:24 +0000 (Tue, 25 May 2010)
Log Message:
-----------
fix bug with urlrewriter plugin not decoding UTF-8 properly
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/VelocityHelper.java
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2010-06-08 02:48:13
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Revision: 885
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=885&view=rev
Author: p_ansell
Date: 2010-06-08 02:48:07 +0000 (Tue, 08 Jun 2010)
Log Message:
-----------
finish working around qut restrictions and fix dbpedia to obo normalisation rules
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
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From: <p_a...@us...> - 2010-06-16 04:10:42
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Revision: 888
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=888&view=rev
Author: p_ansell
Date: 2010-06-16 04:10:36 +0000 (Wed, 16 Jun 2010)
Log Message:
-----------
change over to config.bio2rdf.org for configuration fetching, and add dailymed_drugs to another relevant provider
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2010-09-20 02:54:43
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Revision: 892
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=892&view=rev
Author: p_ansell
Date: 2010-09-20 02:54:37 +0000 (Mon, 20 Sep 2010)
Log Message:
-----------
add config option for turning off the client IP blacklist
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/blacklisterror.jsp
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From: <fbe...@us...> - 2010-09-30 04:19:38
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Revision: 894
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=894&view=rev
Author: fbelleau
Date: 2010-09-30 04:19:31 +0000 (Thu, 30 Sep 2010)
Log Message:
-----------
add vad_package source for bio2rdf.vad
Added Paths:
-----------
trunk/vad_package/
trunk/vad_package/bio2rdf-describe.vsp
trunk/vad_package/bio2rdf-linkns.vsp
trunk/vad_package/bio2rdf-searchns.vsp
trunk/vad_package/copyleft
trunk/vad_package/demo.rdf
trunk/vad_package/get-rdfxml.vsp
trunk/vad_package/index.html
trunk/vad_package/install/
trunk/vad_package/install/chebi-soap.sql
trunk/vad_package/install/chebi.wsdl
trunk/vad_package/install/proc_get_http.sql
trunk/vad_package/install/urlrewrite-bio2rdf.sql
trunk/vad_package/install/urlrewrite-endpoint.sql
trunk/vad_package/install/urlrewrite-html.sql
trunk/vad_package/install/urlrewrite-image.sql
trunk/vad_package/install/urlrewrite-linksns.sql
trunk/vad_package/install/urlrewrite-ns.sql
trunk/vad_package/install/urlrewrite-rdf.sql
trunk/vad_package/install/urlrewrite-searchns.sql
trunk/vad_package/install/urlrewrite-xml.sql
trunk/vad_package/ns2bio2rdf/
trunk/vad_package/ns2bio2rdf/bio2rdf2proxy.vsp
trunk/vad_package/ns2bio2rdf/biopax2bio2rdf.vsp
trunk/vad_package/ns2bio2rdf/dbpedia2bio2rdf.vsp
trunk/vad_package/ns2bio2rdf/drugbank2bio2rdf.vsp
trunk/vad_package/ns2bio2rdf/go2bio2rdf.vsp
trunk/vad_package/ns2bio2rdf/uniprot2bio2rdf.vsp
trunk/vad_package/nsid2rdfxml.vsp
trunk/vad_package/nsid2xml.vsp
trunk/vad_package/path2xml.vsp
trunk/vad_package/rdfxml2ntriples.vsp
trunk/vad_package/reindex.vsp
trunk/vad_package/static/
trunk/vad_package/static/Bio2RDF.jpg
trunk/vad_package/static/a
trunk/vad_package/static/chul.png
trunk/vad_package/static/defaultfr.js
trunk/vad_package/static/gfdynamicfeedcontrol.js
trunk/vad_package/static/jsapi
trunk/vad_package/static/link_chuq2.png
trunk/vad_package/static/link_laval2.png
trunk/vad_package/static/title2.jpg
trunk/vad_package/temp.txt
trunk/vad_package/xml-elink2rdf.vsp
trunk/vad_package/xml-esearch2rdf.vsp
trunk/vad_package/xml2rdf.vsp
trunk/vad_package/xsl2xml.vsp
trunk/vad_package/xslt/
trunk/vad_package/xslt/biopax2xref.xsl
trunk/vad_package/xslt/cid2rdf.xsl
trunk/vad_package/xslt/dbpedia2xref.xsl
trunk/vad_package/xslt/elink2rdf.xsl
trunk/vad_package/xslt/esearch2rdf.xsl
trunk/vad_package/xslt/geneid2rdf.xsl
trunk/vad_package/xslt/go2xref.xsl
trunk/vad_package/xslt/path2rdf.xsl
trunk/vad_package/xslt/pubmed2rdf.xsl
trunk/vad_package/xslt/sid2rdf.xsl
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From: <p_a...@us...> - 2010-11-23 05:13:49
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Revision: 900
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=900&view=rev
Author: p_ansell
Date: 2010-11-23 05:13:43 +0000 (Tue, 23 Nov 2010)
Log Message:
-----------
partway through creating web app configurations in RDF instead of the properties file
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
Added Paths:
-----------
trunk/src/war/WEB-INF/webapp-config-bio2rdf-mquter.n3
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From: <p_a...@us...> - 2010-12-01 10:01:31
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Revision: 906
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=906&view=rev
Author: p_ansell
Date: 2010-12-01 10:01:25 +0000 (Wed, 01 Dec 2010)
Log Message:
-----------
plan how to distribute configurations for bio2rdf
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/webapp-config-bio2rdf-mquter.n3
trunk/src/war/WEB-INF/webapp-config-default.n3
Added Paths:
-----------
trunk/src/war/WEB-INF/webapp-config-bio2rdf-default.n3
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From: <p_a...@us...> - 2010-12-03 22:07:55
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Revision: 910
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=910&view=rev
Author: p_ansell
Date: 2010-12-03 22:07:48 +0000 (Fri, 03 Dec 2010)
Log Message:
-----------
compiles again
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProvenanceRecord.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/queryall.properties
trunk/src/war/WEB-INF/src/org/queryall/DefaultServlet.java
trunk/src/war/WEB-INF/webapp-config-bio2rdf-default.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-mquter.n3
trunk/src/war/atlas2rdf.jsp
trunk/src/war/bio2rdfpipes.jsp
trunk/src/war/blacklisterror.jsp
trunk/src/war/error-sesame-output.jsp
trunk/src/war/errorstats.jsp
trunk/src/war/multifetch.jsp
trunk/src/war/redirectToId.jsp
trunk/src/war/serverstats.jsp
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From: <p_a...@us...> - 2010-12-03 23:25:17
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Revision: 911
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=911&view=rev
Author: p_ansell
Date: 2010-12-03 23:25:11 +0000 (Fri, 03 Dec 2010)
Log Message:
-----------
up to query parameter interpretation stage, needs new implementation as urlrewrite was doing this work for us
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/queryall.properties
trunk/src/war/WEB-INF/webapp-config-bio2rdf-default.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-mquter.n3
trunk/src/war/WEB-INF/webapp-config-default.n3
Removed Paths:
-------------
trunk/src/war/WEB-INF/lib/urlrewrite-3.2.0.jar
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2010-12-07 10:36:26
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Revision: 916
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=916&view=rev
Author: p_ansell
Date: 2010-12-07 10:36:19 +0000 (Tue, 07 Dec 2010)
Log Message:
-----------
rearrange the build file to make it simpler to switch configurations
Modified Paths:
--------------
trunk/build.xml
Added Paths:
-----------
trunk/src/war/WEB-INF/webapp-config-default-mquter-bio2rdf-template.n3
Removed Paths:
-------------
trunk/src/war/WEB-INF/webapp-config-default.n3
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From: <p_a...@us...> - 2010-12-11 05:35:15
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Revision: 920
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=920&view=rev
Author: p_ansell
Date: 2010-12-11 05:35:09 +0000 (Sat, 11 Dec 2010)
Log Message:
-----------
finish making configurations work again
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/queryall.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/WEB-INF/webapp-config-bio2rdf-default.n3
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From: <p_a...@us...> - 2011-01-28 02:28:23
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Revision: 924
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=924&view=rev
Author: p_ansell
Date: 2011-01-28 02:28:17 +0000 (Fri, 28 Jan 2011)
Log Message:
-----------
make /queryall/ work with a servlet instead of a JSP page
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/urlrewrite.xml
Removed Paths:
-------------
trunk/src/war/internalschema.jsp
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From: <p_a...@us...> - 2011-02-03 03:56:00
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Revision: 926
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=926&view=rev
Author: p_ansell
Date: 2011-02-03 03:55:54 +0000 (Thu, 03 Feb 2011)
Log Message:
-----------
reform the settings so that they are initialised to start with from web.xml and not queryall.properties
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/queryall.properties
trunk/src/war/WEB-INF/src/org/queryall/ConfigurationServlet.java
trunk/src/war/WEB-INF/src/org/queryall/GeneralServlet.java
trunk/src/war/WEB-INF/src/org/queryall/ProfilesServlet.java
trunk/src/war/WEB-INF/src/org/queryall/QueryAllSchemaServlet.java
trunk/src/war/WEB-INF/src/org/queryall/RobotsTxtServlet.java
trunk/src/war/WEB-INF/src/org/queryall/RuleTesterServlet.java
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/WEB-INF/web-production-template.xml
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/queryall/ManualRefreshServlet.java
Removed Paths:
-------------
trunk/src/war/bio2rdf.owl
trunk/src/war/biopatml.owl
trunk/src/war/biopax.owl
trunk/src/war/manualrefresh.jsp
Property Changed:
----------------
trunk/src/war/WEB-INF/web-production-template.xml
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From: <p_a...@us...> - 2011-02-04 08:36:48
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Revision: 929
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=929&view=rev
Author: p_ansell
Date: 2011-02-04 08:36:42 +0000 (Fri, 04 Feb 2011)
Log Message:
-----------
make it possible to use a jar independent of the war file
Modified Paths:
--------------
trunk/build.xml
Added Paths:
-----------
trunk/src/jar/
trunk/src/jar/src/
trunk/src/jar/src/de/fuberlin/wiwiss/pubby/negotiation/ContentTypeNegotiator.java
trunk/src/jar/src/de/fuberlin/wiwiss/pubby/negotiation/MediaRangeSpec.java
trunk/src/jar/src/log4j.properties
trunk/src/jar/src/org/bio2rdf/Bio2RdfLanguageNegotiator.java
trunk/src/jar/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/jar/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/jar/src/org/bio2rdf/Settings.java
trunk/src/jar/src/org/bio2rdf/StatisticsEntry.java
trunk/src/jar/src/org/bio2rdf/Utilities.java
trunk/src/jar/src/org/bio2rdf/queryall.properties
trunk/src/jar/src/org/queryall/ConfigurationQueryOptions.java
trunk/src/jar/src/org/queryall/ConfigurationServlet.java
trunk/src/jar/src/org/queryall/DefaultQueryOptions.java
trunk/src/jar/src/org/queryall/GeneralServlet.java
trunk/src/jar/src/org/queryall/ManualRefreshServlet.java
trunk/src/jar/src/org/queryall/ProfilesServlet.java
trunk/src/jar/src/org/queryall/QueryAllSchemaServlet.java
trunk/src/jar/src/org/queryall/RobotsTxtServlet.java
trunk/src/jar/src/org/queryall/RuleTesterQueryOptions.java
trunk/src/jar/src/org/queryall/RuleTesterServlet.java
trunk/src/nonvarargs-sesamewrapper/
trunk/src/nonvarargs-sesamewrapper/NonVarArgsRepositoryConnection.class
trunk/src/nonvarargs-sesamewrapper/NonVarArgsRepositoryConnection.java
Removed Paths:
-------------
trunk/src/jar/src/de/fuberlin/wiwiss/pubby/negotiation/ContentTypeNegotiator.java
trunk/src/jar/src/de/fuberlin/wiwiss/pubby/negotiation/MediaRangeSpec.java
trunk/src/jar/src/log4j.properties
trunk/src/jar/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/jar/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/jar/src/org/bio2rdf/Settings.java
trunk/src/jar/src/org/bio2rdf/StatisticsEntry.java
trunk/src/jar/src/org/bio2rdf/Utilities.java
trunk/src/jar/src/org/bio2rdf/queryall.properties
trunk/src/jar/src/org/queryall/DefaultServlet.java
trunk/src/jar/src/org/queryall/QueryOptions.java
trunk/src/war/META-INF/
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From: <p_a...@us...> - 2011-02-04 08:55:49
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Revision: 930
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=930&view=rev
Author: p_ansell
Date: 2011-02-04 08:55:43 +0000 (Fri, 04 Feb 2011)
Log Message:
-----------
put log4j.properties back in its default location
Modified Paths:
--------------
trunk/build.xml
Added Paths:
-----------
trunk/src/war/WEB-INF/classes/
trunk/src/war/WEB-INF/classes/log4j.properties
Removed Paths:
-------------
trunk/src/jar/src/log4j.properties
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From: <p_a...@us...> - 2011-02-04 09:48:48
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Revision: 931
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=931&view=rev
Author: p_ansell
Date: 2011-02-04 09:48:42 +0000 (Fri, 04 Feb 2011)
Log Message:
-----------
move queryall.properties file
Modified Paths:
--------------
trunk/build.xml
trunk/src/jar/src/org/bio2rdf/Settings.java
Added Paths:
-----------
trunk/src/jar/src/org/queryall/queryall.properties
Removed Paths:
-------------
trunk/src/jar/src/org/bio2rdf/queryall.properties
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From: <p_a...@us...> - 2011-02-06 03:32:45
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Revision: 935
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=935&view=rev
Author: p_ansell
Date: 2011-02-06 03:32:38 +0000 (Sun, 06 Feb 2011)
Log Message:
-----------
rearrange a large number of things, and add in a new api jar file build to make it easy to have alternate implementations of the interface in future since things are being rearranged now anyway
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/carleton-configuration.n3
trunk/src/war/WEB-INF/sharednames-configuration.n3
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/WEB-INF/webapp-config-bio2rdf-carleton.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-default.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-mquter.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-quebec.n3
trunk/src/war/WEB-INF/webapp-config-default-carleton-bio2rdf-template.n3
trunk/src/war/WEB-INF/webapp-config-default-mquter-bio2rdf-template.n3
trunk/src/war/WEB-INF/webapp-config-default-quebec-bio2rdf-template.n3
Added Paths:
-----------
trunk/src/api-jar/
trunk/src/api-jar/src/
trunk/src/api-jar/src/org/
trunk/src/api-jar/src/org/queryall/
trunk/src/api-jar/src/org/queryall/BaseQueryAllInterface.java
trunk/src/api-jar/src/org/queryall/NormalisationRule.java
trunk/src/jar/src/org/queryall/servlets/
trunk/src/jar/src/org/queryall/servlets/ConfigurationServlet.java
trunk/src/jar/src/org/queryall/servlets/GeneralServlet.java
trunk/src/jar/src/org/queryall/servlets/ManualRefreshServlet.java
trunk/src/jar/src/org/queryall/servlets/ProfilesServlet.java
trunk/src/jar/src/org/queryall/servlets/QueryAllSchemaServlet.java
trunk/src/jar/src/org/queryall/servlets/RobotsTxtServlet.java
trunk/src/jar/src/org/queryall/servlets/RuleTesterServlet.java
trunk/src/jar/src/org/queryall/servlets/queryparsers/
trunk/src/jar/src/org/queryall/servlets/queryparsers/ConfigurationQueryOptions.java
trunk/src/jar/src/org/queryall/servlets/queryparsers/DefaultQueryOptions.java
trunk/src/jar/src/org/queryall/servlets/queryparsers/RuleTesterQueryOptions.java
Removed Paths:
-------------
trunk/src/jar/src/org/queryall/ConfigurationQueryOptions.java
trunk/src/jar/src/org/queryall/ConfigurationServlet.java
trunk/src/jar/src/org/queryall/DefaultQueryOptions.java
trunk/src/jar/src/org/queryall/GeneralServlet.java
trunk/src/jar/src/org/queryall/ManualRefreshServlet.java
trunk/src/jar/src/org/queryall/NormalisationRule.java
trunk/src/jar/src/org/queryall/ProfilesServlet.java
trunk/src/jar/src/org/queryall/QueryAllSchemaServlet.java
trunk/src/jar/src/org/queryall/RdfCompatible.java
trunk/src/jar/src/org/queryall/RobotsTxtServlet.java
trunk/src/jar/src/org/queryall/RuleTesterQueryOptions.java
trunk/src/jar/src/org/queryall/RuleTesterServlet.java
Property Changed:
----------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/basicrdffile.n3
trunk/src/war/WEB-INF/carleton-configuration.n3
trunk/src/war/WEB-INF/my-local-configuration-example.n3
trunk/src/war/WEB-INF/sharednames-configuration.n3
trunk/src/war/WEB-INF/test-configuration.n3
trunk/src/war/WEB-INF/test-simplest-configuration.n3
trunk/src/war/WEB-INF/void-example.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-carleton.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-default.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-mquter.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-quebec.n3
trunk/src/war/WEB-INF/webapp-config-default-carleton-bio2rdf-template.n3
trunk/src/war/WEB-INF/webapp-config-default-mquter-bio2rdf-template.n3
trunk/src/war/WEB-INF/webapp-config-default-quebec-bio2rdf-template.n3
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From: <p_a...@us...> - 2011-02-06 05:34:29
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Revision: 936
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=936&view=rev
Author: p_ansell
Date: 2011-02-06 05:34:23 +0000 (Sun, 06 Feb 2011)
Log Message:
-----------
move a large number of things around in the heirarchy and create interfaces for each of the main model objects
Modified Paths:
--------------
trunk/build.xml
trunk/src/api-jar/src/org/queryall/BaseQueryAllInterface.java
trunk/src/api-jar/src/org/queryall/NormalisationRule.java
trunk/src/jar/src/org/queryall/servlets/ConfigurationServlet.java
trunk/src/jar/src/org/queryall/servlets/GeneralServlet.java
trunk/src/jar/src/org/queryall/servlets/ProfilesServlet.java
trunk/src/jar/src/org/queryall/servlets/QueryAllSchemaServlet.java
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/classes/log4j.properties
trunk/src/war/WEB-INF/sharednames-configuration.n3
trunk/src/war/WEB-INF/test-configuration.n3
trunk/src/war/bio2rdfpipes.jsp
trunk/src/war/blacklisterror.jsp
trunk/src/war/jsp-bio2rdf/namespacecounts.jsp
trunk/src/war/multifetch.jsp
trunk/src/war/namespaceproviders.jsp
Added Paths:
-----------
trunk/src/api-jar/src/org/queryall/NamespaceEntry.java
trunk/src/api-jar/src/org/queryall/Profile.java
trunk/src/api-jar/src/org/queryall/Project.java
trunk/src/api-jar/src/org/queryall/Provider.java
trunk/src/api-jar/src/org/queryall/QueryType.java
trunk/src/api-jar/src/org/queryall/RuleTest.java
trunk/src/jar/src/org/queryall/blacklist/
trunk/src/jar/src/org/queryall/blacklist/BlacklistController.java
trunk/src/jar/src/org/queryall/blacklist/BlacklistEntry.java
trunk/src/jar/src/org/queryall/helpers/
trunk/src/jar/src/org/queryall/helpers/Settings.java
trunk/src/jar/src/org/queryall/helpers/SparqlQueryCreator.java
trunk/src/jar/src/org/queryall/helpers/Utilities.java
trunk/src/jar/src/org/queryall/helpers/VoidUtility.java
trunk/src/jar/src/org/queryall/impl/
trunk/src/jar/src/org/queryall/impl/NamespaceEntryImpl.java
trunk/src/jar/src/org/queryall/impl/NormalisationRuleImpl.java
trunk/src/jar/src/org/queryall/impl/ProfileImpl.java
trunk/src/jar/src/org/queryall/impl/ProjectImpl.java
trunk/src/jar/src/org/queryall/impl/ProviderImpl.java
trunk/src/jar/src/org/queryall/impl/QueryTypeImpl.java
trunk/src/jar/src/org/queryall/impl/RegexNormalisationRule.java
trunk/src/jar/src/org/queryall/impl/RuleTestImpl.java
trunk/src/jar/src/org/queryall/impl/SparqlNormalisationRule.java
trunk/src/jar/src/org/queryall/impl/TemplateImpl.java
trunk/src/jar/src/org/queryall/queryutils/
trunk/src/jar/src/org/queryall/queryutils/HttpUrlQueryRunnable.java
trunk/src/jar/src/org/queryall/queryutils/ProvenanceRecord.java
trunk/src/jar/src/org/queryall/queryutils/QueryBundle.java
trunk/src/jar/src/org/queryall/queryutils/QueryDebug.java
trunk/src/jar/src/org/queryall/queryutils/RdfFetchController.java
trunk/src/jar/src/org/queryall/queryutils/RdfFetcher.java
trunk/src/jar/src/org/queryall/queryutils/RdfFetcherQueryRunnable.java
trunk/src/jar/src/org/queryall/queryutils/RdfFetcherSparqlQueryRunnable.java
trunk/src/jar/src/org/queryall/queryutils/RdfFetcherUriQueryRunnable.java
trunk/src/jar/src/org/queryall/servlets/QueryallContentNegotiator.java
trunk/src/jar/src/org/queryall/servlets/QueryallLanguageNegotiator.java
trunk/src/jar/src/org/queryall/servlets/html/
trunk/src/jar/src/org/queryall/servlets/html/HtmlPageRenderer.java
trunk/src/jar/src/org/queryall/servlets/html/VelocityHelper.java
trunk/src/jar/src/org/queryall/statistics/
trunk/src/jar/src/org/queryall/statistics/StatisticsEntry.java
Removed Paths:
-------------
trunk/src/jar/src/org/bio2rdf/
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From: <p_a...@us...> - 2011-02-09 05:33:12
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Revision: 948
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=948&view=rev
Author: p_ansell
Date: 2011-02-09 05:33:06 +0000 (Wed, 09 Feb 2011)
Log Message:
-----------
move configurations to a subdirectory and cleanup the debugging levels for the Settings class
Modified Paths:
--------------
trunk/build.xml
trunk/src/jar/src/org/queryall/helpers/Settings.java
trunk/src/jar/src/org/queryall/servlets/queryparsers/ConfigurationQueryOptions.java
trunk/src/jar/src/org/queryall/servlets/queryparsers/DefaultQueryOptions.java
Added Paths:
-----------
trunk/src/war/WEB-INF/config/
trunk/src/war/WEB-INF/config/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/config/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/config/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/config/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/config/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/config/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/config/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/config/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/config/base-bio2rdf-ruletests-config.n3
trunk/src/war/WEB-INF/config/basicrdffile.n3
trunk/src/war/WEB-INF/config/carleton-configuration.n3
trunk/src/war/WEB-INF/config/my-local-configuration-example.n3
trunk/src/war/WEB-INF/config/sharednames-configuration.n3
trunk/src/war/WEB-INF/config/test-configuration.n3
trunk/src/war/WEB-INF/config/test-simplest-configuration.n3
trunk/src/war/WEB-INF/config/void-example.n3
trunk/src/war/WEB-INF/config/webapp-config-bio2rdf-carleton.n3
trunk/src/war/WEB-INF/config/webapp-config-bio2rdf-default.n3
trunk/src/war/WEB-INF/config/webapp-config-bio2rdf-mquter.n3
trunk/src/war/WEB-INF/config/webapp-config-bio2rdf-quebec.n3
trunk/src/war/WEB-INF/config/webapp-config-default-balancing-bio2rdf-template.n3
trunk/src/war/WEB-INF/config/webapp-config-default-carleton-bio2rdf-template.n3
trunk/src/war/WEB-INF/config/webapp-config-default-mquter-bio2rdf-template.n3
trunk/src/war/WEB-INF/config/webapp-config-default-quebec-bio2rdf-template.n3
Removed Paths:
-------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-ruletests-config.n3
trunk/src/war/WEB-INF/basicrdffile.n3
trunk/src/war/WEB-INF/carleton-configuration.n3
trunk/src/war/WEB-INF/my-local-configuration-example.n3
trunk/src/war/WEB-INF/sharednames-configuration.n3
trunk/src/war/WEB-INF/test-configuration.n3
trunk/src/war/WEB-INF/test-simplest-configuration.n3
trunk/src/war/WEB-INF/void-example.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-carleton.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-default.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-mquter.n3
trunk/src/war/WEB-INF/webapp-config-bio2rdf-quebec.n3
trunk/src/war/WEB-INF/webapp-config-default-carleton-bio2rdf-template.n3
trunk/src/war/WEB-INF/webapp-config-default-mquter-bio2rdf-template.n3
trunk/src/war/WEB-INF/webapp-config-default-quebec-bio2rdf-template.n3
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From: <p_a...@us...> - 2011-02-16 08:23:44
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Revision: 952
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=952&view=rev
Author: p_ansell
Date: 2011-02-16 08:23:38 +0000 (Wed, 16 Feb 2011)
Log Message:
-----------
fix robots.txt functionality and make remote configuration fetching work
Modified Paths:
--------------
trunk/build.xml
trunk/src/jar/src/org/queryall/helpers/Settings.java
trunk/src/jar/src/org/queryall/servlets/ConfigurationServlet.java
trunk/src/jar/src/org/queryall/servlets/RobotsTxtServlet.java
trunk/src/war/WEB-INF/classes/log4j.properties
trunk/src/war/WEB-INF/config/webapp-config-bio2rdf-carleton.n3
trunk/src/war/WEB-INF/config/webapp-config-bio2rdf-quebec.n3
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2011-02-22 20:50:02
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Revision: 971
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=971&view=rev
Author: p_ansell
Date: 2011-02-22 20:49:56 +0000 (Tue, 22 Feb 2011)
Log Message:
-----------
fix /search/ and /searchns/ queries that rely on a special urlrewrite rule due to their lack of the ns:id structure that matches most of the other queries to the GeneralServlet
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/urlrewrite.xml
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