Thread: [Bio2rdf-svncommits] SF.net SVN: bio2rdf:[106] trunk/src/war
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From: <p_a...@us...> - 2008-09-25 06:29:40
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Revision: 106
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=106&view=rev
Author: p_ansell
Date: 2008-09-25 06:29:31 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
add in some fixes to various elements
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-01 07:26:33
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Revision: 109
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=109&view=rev
Author: p_ansell
Date: 2008-10-01 07:26:27 +0000 (Wed, 01 Oct 2008)
Log Message:
-----------
add randomising behaviour properly
Modified Paths:
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trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-01 08:24:12
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Revision: 110
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=110&view=rev
Author: p_ansell
Date: 2008-10-01 08:24:08 +0000 (Wed, 01 Oct 2008)
Log Message:
-----------
commit just before adding the idea of a querybundle in order to support the configuration based normalisation rules
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-01 10:02:06
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Revision: 111
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=111&view=rev
Author: p_ansell
Date: 2008-10-01 10:01:49 +0000 (Wed, 01 Oct 2008)
Log Message:
-----------
add in regex, although it is not currently working for some reason
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/atlas2rdf.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
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From: <p_a...@us...> - 2008-10-02 03:43:06
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Revision: 112
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=112&view=rev
Author: p_ansell
Date: 2008-10-02 03:43:02 +0000 (Thu, 02 Oct 2008)
Log Message:
-----------
commit current progress in getting regex integrated
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-02 06:28:43
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Revision: 113
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=113&view=rev
Author: p_ansell
Date: 2008-10-02 06:28:38 +0000 (Thu, 02 Oct 2008)
Log Message:
-----------
update things so that regex works, and there is some error detection that is useful for the index queries particularly
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-02 07:07:48
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Revision: 114
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=114&view=rev
Author: p_ansell
Date: 2008-10-02 07:07:38 +0000 (Thu, 02 Oct 2008)
Log Message:
-----------
add some error handling for bad endpoints that is persistent across the session
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-02 11:20:07
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Revision: 115
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=115&view=rev
Author: p_ansell
Date: 2008-10-02 11:19:59 +0000 (Thu, 02 Oct 2008)
Log Message:
-----------
add a new rule and fix atlas2rdf.jsp with its blacklist functionality
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-03 00:59:11
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Revision: 119
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=119&view=rev
Author: p_ansell
Date: 2008-10-03 00:59:08 +0000 (Fri, 03 Oct 2008)
Log Message:
-----------
make the html redirection work a bit better
Modified Paths:
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trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-03 00:35:58
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Revision: 118
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=118&view=rev
Author: p_ansell
Date: 2008-10-03 00:35:56 +0000 (Fri, 03 Oct 2008)
Log Message:
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add in more entries to the properties file
Modified Paths:
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trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-08 22:43:06
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Revision: 120
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=120&view=rev
Author: p_ansell
Date: 2008-10-08 22:43:04 +0000 (Wed, 08 Oct 2008)
Log Message:
-----------
add more html providers to bio2rdf.properties, and add in a sanity-check in atlas2rdf.jsp
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-12 23:58:47
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Revision: 121
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=121&view=rev
Author: p_ansell
Date: 2008-10-12 23:58:42 +0000 (Sun, 12 Oct 2008)
Log Message:
-----------
add in CustomQuery methodology for basic generic custom query construction and usage
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/test-regexmethods.jsp
trunk/src/war/xsl-sources/biopatml.xsl
trunk/src/war/xsl-sources/cid.xsl
trunk/src/war/xsl-sources/crystaleye.xsl
trunk/src/war/xsl-sources/geneid.xsl~
trunk/src/war/xsl-sources/gopubmed.xsl
trunk/src/war/xsl-sources/kegg.xsl
trunk/src/war/xsl-sources/pubchem.xsl
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From: <p_a...@us...> - 2008-10-13 01:18:06
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Revision: 122
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=122&view=rev
Author: p_ansell
Date: 2008-10-13 01:18:02 +0000 (Mon, 13 Oct 2008)
Log Message:
-----------
fix small issues and set debug levels for production release
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-19 02:13:34
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Revision: 127
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=127&view=rev
Author: p_ansell
Date: 2008-10-19 02:13:30 +0000 (Sun, 19 Oct 2008)
Log Message:
-----------
add experimental unfinished doi resolver
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
Added Paths:
-----------
trunk/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp
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From: <p_a...@us...> - 2008-10-22 04:35:15
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Revision: 137
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=137&view=rev
Author: p_ansell
Date: 2008-10-22 04:35:06 +0000 (Wed, 22 Oct 2008)
Log Message:
-----------
fix bug with useSparqlGraph and tune log4j.properties
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-23 06:36:59
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Revision: 139
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=139&view=rev
Author: p_ansell
Date: 2008-10-23 06:36:51 +0000 (Thu, 23 Oct 2008)
Log Message:
-----------
add in HTTP 400 status code page for requests which are not valid
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-27 22:55:28
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Revision: 142
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=142&view=rev
Author: p_ansell
Date: 2008-10-27 22:10:14 +0000 (Mon, 27 Oct 2008)
Log Message:
-----------
PARTIALLY BROKEN: have included static rdf/xml strings almost working, replacements are just not going as planned for them yet
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlRdfFetchController.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-28 02:03:09
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Revision: 143
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=143&view=rev
Author: p_ansell
Date: 2008-10-28 02:03:06 +0000 (Tue, 28 Oct 2008)
Log Message:
-----------
search working
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/demo.rdf
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From: <p_a...@us...> - 2008-10-29 04:15:04
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Revision: 144
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=144&view=rev
Author: p_ansell
Date: 2008-10-29 04:14:55 +0000 (Wed, 29 Oct 2008)
Log Message:
-----------
almost complete the new architecture, left off default for construct until the number of successful results can be contained
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlRdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-30 05:06:49
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Revision: 146
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=146&view=rev
Author: p_ansell
Date: 2008-10-30 05:06:27 +0000 (Thu, 30 Oct 2008)
Log Message:
-----------
more tuneups to get ready for 0.2.1, still does all queries at once
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlRdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-10-31 02:37:13
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Revision: 148
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=148&view=rev
Author: p_ansell
Date: 2008-10-31 02:37:08 +0000 (Fri, 31 Oct 2008)
Log Message:
-----------
remove some things and fix urlrewrite
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
Removed Paths:
-------------
trunk/src/war/jsp-includes/
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From: <p_a...@us...> - 2008-10-31 03:05:36
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Revision: 149
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=149&view=rev
Author: p_ansell
Date: 2008-10-31 03:05:28 +0000 (Fri, 31 Oct 2008)
Log Message:
-----------
move images directory so it won't accidentally conflict and fix urlrewrite and add kegg-Entry fix
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/index.html
Added Paths:
-----------
trunk/src/war/includes-images/
Removed Paths:
-------------
trunk/src/war/images/
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From: <p_a...@us...> - 2008-11-04 02:13:00
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Revision: 154
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=154&view=rev
Author: p_ansell
Date: 2008-11-04 02:12:58 +0000 (Tue, 04 Nov 2008)
Log Message:
-----------
minor tweaks
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-11-04 05:37:23
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Revision: 155
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=155&view=rev
Author: p_ansell
Date: 2008-11-04 05:37:19 +0000 (Tue, 04 Nov 2008)
Log Message:
-----------
fine tune and add new configurations for some namespaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-11-14 00:48:17
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Revision: 158
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=158&view=rev
Author: p_ansell
Date: 2008-11-14 00:48:07 +0000 (Fri, 14 Nov 2008)
Log Message:
-----------
fix up some search rdfisers and add some more query types to the properties file
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-entrez2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-pubmed2rdf.jsp
trunk/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp
trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
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