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From: <p_a...@us...> - 2008-07-30 10:13:14
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Revision: 79
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=79&view=rev
Author: p_ansell
Date: 2008-07-30 10:13:23 +0000 (Wed, 30 Jul 2008)
Log Message:
-----------
cleanup, add properties file for basic properties so far, change build system to fit with the properties, and provide backwards compatibility with old namespaces used in databases and datadumps at the atlas2rdf.jsp level
Modified Paths:
--------------
branches/stripped-down-version/build.xml
branches/stripped-down-version/src/war/WEB-INF/system.conf
branches/stripped-down-version/src/war/WEB-INF/urlrewrite.xml
branches/stripped-down-version/src/war/atlas2rdf.jsp
Added Paths:
-----------
branches/stripped-down-version/src/util/perl/freebase2n3.pl
branches/stripped-down-version/src/war/WEB-INF/src/
branches/stripped-down-version/src/war/WEB-INF/src/log4j.properties
branches/stripped-down-version/src/war/WEB-INF/src/org/
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/Settings.java
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
Removed Paths:
-------------
branches/stripped-down-version/src/war/WEB-INF/classes/log4j.properties
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From: <p_a...@us...> - 2008-08-01 05:58:22
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Revision: 82
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=82&view=rev
Author: p_ansell
Date: 2008-08-01 05:58:31 +0000 (Fri, 01 Aug 2008)
Log Message:
-----------
add provider configuration materials
Modified Paths:
--------------
branches/stripped-down-version/build.xml
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/Settings.java
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
branches/stripped-down-version/src/war/atlas2rdf.jsp
Added Paths:
-----------
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
Removed Paths:
-------------
branches/stripped-down-version/src/war/atlas-redirect2rdf.jsp
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From: <p_a...@us...> - 2008-08-05 06:07:13
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Revision: 84
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=84&view=rev
Author: p_ansell
Date: 2008-08-05 06:07:22 +0000 (Tue, 05 Aug 2008)
Log Message:
-----------
more updates to customise the link queries to make them suitable for distributed databases
Modified Paths:
--------------
branches/stripped-down-version/build.xml
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/Settings.java
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
branches/stripped-down-version/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-08-12 07:35:31
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Revision: 88
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=88&view=rev
Author: p_ansell
Date: 2008-08-12 07:35:39 +0000 (Tue, 12 Aug 2008)
Log Message:
-----------
massive changes, make search and links work better, and readd dynamic search capabilities
Modified Paths:
--------------
branches/stripped-down-version/build.xml
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/Settings.java
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
branches/stripped-down-version/src/war/WEB-INF/urlrewrite.xml
branches/stripped-down-version/src/war/WEB-INF/web-production-template.xml
branches/stripped-down-version/src/war/atlas2rdf.jsp
branches/stripped-down-version/src/war/favicon.ico
branches/stripped-down-version/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-entrez2rdf.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
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From: <p_a...@us...> - 2008-09-11 00:50:22
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Revision: 94
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=94&view=rev
Author: p_ansell
Date: 2008-09-11 00:50:31 +0000 (Thu, 11 Sep 2008)
Log Message:
-----------
add some new things
Modified Paths:
--------------
branches/stripped-down-version/src/util/perl/bio-tab2rdf.pl
branches/stripped-down-version/src/util/perl/cleanupdata.pl
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/Settings.java
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
branches/stripped-down-version/src/war/atlas2rdf.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/obo-xref2rdf.jsp
Added Paths:
-----------
branches/stripped-down-version/src/util/perl/bio-tab2rdf.pl~
branches/stripped-down-version/src/util/perl/cleanupdata.pl~
branches/stripped-down-version/src/util/perl/elmo.pl~
branches/stripped-down-version/src/util/perl/geneid2mysql.pl
branches/stripped-down-version/src/util/perl/generic-Mysql-XML2RDF.pl
branches/stripped-down-version/src/util/perl/hgnc-csv2rdf.pl~
branches/stripped-down-version/src/util/perl/homologene2rdf.pl
branches/stripped-down-version/src/util/perl/loadvirtuoso.pl~
branches/stripped-down-version/src/util/perl/mysql2sesame.pl~
branches/stripped-down-version/src/util/perl/obo2mysql.pl
branches/stripped-down-version/src/util/perl/regulondb-tab2rdf.pl~
branches/stripped-down-version/src/util/perl/regulondb-virtuoso.pl~
branches/stripped-down-version/src/util/shell/gene2xml.sh
branches/stripped-down-version/src/util/shell/geneid-wget.sh
branches/stripped-down-version/src/util/shell/load_ttl.sh~
branches/stripped-down-version/src/war/jsp-bio2rdf/bio2rdf-demo.rdf~
branches/stripped-down-version/src/war/jsp-bio2rdf/bio2rdf-header2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/biocarta-all-http2rdf.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/biocarta-category-http2rdf.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/biocarta-pathway-http2rdf.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/biopax-xref2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/biopax2bpl-v1.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/biopax2bpl.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/construct-synonyme2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ensembl-g2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ensembl-p2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ensembl-t2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/fulltext2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/gdb-http2bio2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/go-http2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/hugo-http2bio2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/kegg-composite2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/kegg-kgml2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/kegg-kgml2rdf.xsl~
branches/stripped-down-version/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/lsid-sameas2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/mesh-nih2rdf.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/mesh2rdf.jsp
branches/stripped-down-version/src/war/jsp-bio2rdf/mysql2statistics.rdf~
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-entrez2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-genbank2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-geneid2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-gi-genbank2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-mesh-http2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-omim2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-pubchem2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/ncbi-pubmed2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/obo-xref2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/obo2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/pdb-http2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/reactome-taxon-all-http2seealso.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/reactome-taxon-http2seealso.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/reactome-xref2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/reactome2bio2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/search-rdfdata.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/search-v1.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/search.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/swoogle-search2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/uniprot-header2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/uniprot-http2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/uniprot-keyword-http2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/uniprot-rdf2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/wsdl-authority.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/wsdl-service.jsp~
branches/stripped-down-version/src/war/jsp-bio2rdf/wsdl-service2rdf.jsp~
branches/stripped-down-version/src/war/robots.txt
branches/stripped-down-version/src/war/sitemap.xml
branches/stripped-down-version/src/war/xsl-sources/
branches/stripped-down-version/src/war/xsl-sources/geneid.xsl
branches/stripped-down-version/src/war/xsl-sources/obo.xsl
branches/stripped-down-version/src/war/xsl-sources/pubmed.xsl
Property Changed:
----------------
branches/stripped-down-version/
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From: <p_a...@us...> - 2008-09-23 07:04:27
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Revision: 98
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=98&view=rev
Author: p_ansell
Date: 2008-09-23 07:04:17 +0000 (Tue, 23 Sep 2008)
Log Message:
-----------
update package to utilise current endpoints by default and avoid some issues with redirecting when there is no default provider defined
Modified Paths:
--------------
branches/stripped-down-version/build.xml
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
branches/stripped-down-version/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2008-09-25 00:31:22
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Revision: 104
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=104&view=rev
Author: p_ansell
Date: 2008-09-25 00:31:13 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
fix the index and links queries to be objects instead of subjects of their respective RDF statements and bump build.xml version up to next release number
Modified Paths:
--------------
branches/stripped-down-version/build.xml
branches/stripped-down-version/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
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