Thread: [Bio2rdf-bugs] [ bio2rdf-Bugs-2802092 ] missing go entries
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From: SourceForge.net <no...@so...> - 2009-06-05 22:53:45
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Bugs item #2802092, was opened at 2009-06-05 18:53 Message generated for change (Tracker Item Submitted) made by dgrobe You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802092&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: michael grobe (dgrobe) Assigned to: Nobody/Anonymous (nobody) Summary: missing go entries Initial Comment: it appears to me that go:0005488 has no parents...but a lot of GO categories have 5488 as a parent...and my text version of GO has GO:0003674 (molecular_function) as a (actually, the only) is_a parent to 5488. it could be that some RDFizer misses 5488 cuz 3674 is more or less the root of the molecular function tree.... ...but then I'm a brand new user, so it's probably just me. FYI michael grobe ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802092&group_id=142631 |
From: SourceForge.net <no...@so...> - 2009-06-06 05:51:13
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Bugs item #2802092, was opened at 2009-06-06 08:53 Message generated for change (Comment added) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802092&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Works For Me Priority: 5 Private: No Submitted By: michael grobe (dgrobe) Assigned to: Nobody/Anonymous (nobody) Summary: missing go entries Initial Comment: it appears to me that go:0005488 has no parents...but a lot of GO categories have 5488 as a parent...and my text version of GO has GO:0003674 (molecular_function) as a (actually, the only) is_a parent to 5488. it could be that some RDFizer misses 5488 cuz 3674 is more or less the root of the molecular function tree.... ...but then I'm a brand new user, so it's probably just me. FYI michael grobe ---------------------------------------------------------------------- >Comment By: Peter Ansell (p_ansell) Date: 2009-06-06 15:51 Message: It looks to me like the RDF triple "<http://bio2rdf.org/go:0005488> <http://bio2rdf.org/ns/go#is_a> <http://bio2rdf.org/go:0003674>" exists in the document you get from both http://qut.bio2rdf.org/go:0005488 and http://quebec.bio2rdf.org/go:0005488 There are two different servers that resolve information for http://bio2rdf.org/, but they both have that statement in this case. Apologies in advance for any confusion that is caused by the two servers having different software installed on them. I am doing my PhD in resolution of queries, and the other server administrators choose not to use my software because they see it as being too slow... If in doubt, you will get more information if you change http://bio2rdf.org/ to http://qut.bio2rdf.org/ Also, some of the databases are being restarted this weekend so there may be downtime for the next few days. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802092&group_id=142631 |
From: SourceForge.net <no...@so...> - 2009-06-29 05:45:00
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Bugs item #2802092, was opened at 2009-06-06 08:53 Message generated for change (Settings changed) made by p_ansell You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802092&group_id=142631 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Rdfisers >Group: Non-package-related Status: Closed Resolution: Works For Me Priority: 5 Private: No Submitted By: michael grobe (dgrobe) >Assigned to: Peter Ansell (p_ansell) Summary: missing go entries Initial Comment: it appears to me that go:0005488 has no parents...but a lot of GO categories have 5488 as a parent...and my text version of GO has GO:0003674 (molecular_function) as a (actually, the only) is_a parent to 5488. it could be that some RDFizer misses 5488 cuz 3674 is more or less the root of the molecular function tree.... ...but then I'm a brand new user, so it's probably just me. FYI michael grobe ---------------------------------------------------------------------- Comment By: Peter Ansell (p_ansell) Date: 2009-06-06 15:51 Message: It looks to me like the RDF triple "<http://bio2rdf.org/go:0005488> <http://bio2rdf.org/ns/go#is_a> <http://bio2rdf.org/go:0003674>" exists in the document you get from both http://qut.bio2rdf.org/go:0005488 and http://quebec.bio2rdf.org/go:0005488 There are two different servers that resolve information for http://bio2rdf.org/, but they both have that statement in this case. Apologies in advance for any confusion that is caused by the two servers having different software installed on them. I am doing my PhD in resolution of queries, and the other server administrators choose not to use my software because they see it as being too slow... If in doubt, you will get more information if you change http://bio2rdf.org/ to http://qut.bio2rdf.org/ Also, some of the databases are being restarted this weekend so there may be downtime for the next few days. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=814189&aid=2802092&group_id=142631 |