I slightly modified some updates and now I am getting an NPE.
Change my side involved creating two inserts where I used to have one. The whole operation is passed as an update request to NSS.
I also added the hint:Prior
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: Query: base <https://test-sybx-dc443.syapse.com/ <https://test-sybx-dc443.syapse.com/>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix owl: <http://www.w3.org/2002/07/owl# <http://www.w3.org/2002/07/owl#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix s: </bdm/api/>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns# <http://www.w3.org/1999/02/22-rdf-syntax-ns#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix bds: <http://www.bigdata.com/rdf/search# <http://www.bigdata.com/rdf/search#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix xsd: <http://www.w3.org/2001/XMLSchema# <http://www.w3.org/2001/XMLSchema#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix rdfs: <http://www.w3.org/2000/01/rdf-schema# <http://www.w3.org/2000/01/rdf-schema#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix skos: <http://www.w3.org/2004/02/skos/core# <http://www.w3.org/2004/02/skos/core#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix dc: <http://purl.org/dc/elements/1.1/ <http://purl.org/dc/elements/1.1/>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix syapse: </graph/syapse#>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: DELETE {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subOld <https://test-sybx-dc443.syapse.com/graph/syapse#broader <https://test-sybx-dc443.syapse.com/graph/syapse#broader>> ?superOld .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: WHERE
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subOld <https://test-sybx-dc443.syapse.com/graph/syapse#broader <https://test-sybx-dc443.syapse.com/graph/syapse#broader>> ?superOld .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: } ;
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: INSERT {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew <https://test-sybx-dc443.syapse.com/graph/syapse#broader <https://test-sybx-dc443.syapse.com/graph/syapse#broader>> ?superNew .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: WHERE
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew rdf:type <http://www.w3.org/2004/02/skos/core#Concept <http://www.w3.org/2004/02/skos/core#Concept>> .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew skos:broader * ?superNew .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?superNew rdf:type <http://www.w3.org/2004/02/skos/core#Concept <http://www.w3.org/2004/02/skos/core#Concept>> .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: hint:Prior hint:runLast true .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: } ;
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: INSERT {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew <https://test-sybx-dc443.syapse.com/graph/syapse#broader <https://test-sybx-dc443.syapse.com/graph/syapse#broader>> ?superNew .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: WHERE
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?superNew rdf:type <http://www.w3.org/2004/02/skos/core#Concept <http://www.w3.org/2004/02/skos/core#Concept>> .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew skos:broader * ?superNew .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew rdf:type <http://www.w3.org/2004/02/skos/core#Concept <http://www.w3.org/2004/02/skos/core#Concept>> .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: hint:Prior hint:runLast true .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: } ;
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: org.openrdf.query.UpdateExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.NullPointerException: leaf=com.bigdata.btree.Leaf@22bfc1f9#-5826724432438073(deleted){ isDirty=false, isDeleted=true, addr=-5826724432438073, parent=N/A, isRoot=false, data=NA}
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.util.concurrent.FutureTask.report(FutureTask.java:122)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.util.concurrent.FutureTask.get(FutureTask.java:188)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.BigdataServlet.submitApiTask(BigdataServlet.java:261)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.QueryServlet.doSparqlUpdate(QueryServlet.java:359)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:169)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:769)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1125)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1059)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:110)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.Server.handle(Server.java:497)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:248)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:610)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:539)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.lang.Thread.run(Thread.java:745)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: Caused by: java.util.concurrent.ExecutionException: org.openrdf.query.UpdateExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.NullPointerException: leaf=com.bigdata.btree.Leaf@22bfc1f9#-5826724432438073(deleted){ isDirty=false, isDeleted=true, addr=-5826724432438073, parent=N/A, isRoot=false, data=NA}
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.util.concurrent.FutureTask.report(FutureTask.java:122)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.util.concurrent.FutureTask.get(FutureTask.java:188)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.QueryServlet$SparqlUpdateTask.call(QueryServlet.java:460)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.QueryServlet$SparqlUpdateTask.call(QueryServlet.java:371)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.task.ApiTaskForIndexManager.call(ApiTaskForIndexManager.java:68)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.util.concurrent.FutureTask.run(FutureTask.java:262)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.task.AbstractApiTask.submitApiTask(AbstractApiTask.java:365)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.BigdataServlet.submitApiTask(BigdataServlet.java:258)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ... 25 more
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: Caused by: org.openrdf.query.UpdateExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.NullPointerException: leaf=com.bigdata.btree.Leaf@22bfc1f9#-5826724432438073(deleted){ isDirty=false, isDeleted=true, addr=-5826724432438073, parent=N/A, isRoot=false, data=NA}
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sparql.ast.eval.ASTEvalHelper.executeUpdate(ASTEvalHelper.java:1303)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.BigdataSailUpdate.execute2(BigdataSailUpdate.java:152)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.BigdataRDFContext$UpdateTask.doQuery(BigdataRDFContext.java:1683)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.innerCall(BigdataRDFContext.java:1310)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1275)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:517)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.util.concurrent.FutureTask.run(FutureTask.java:262)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ... 1 more
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.NullPointerException: leaf=com.bigdata.btree.Leaf@22bfc1f9#-5826724432438073(deleted){ isDirty=false, isDeleted=true, addr=-5826724432438073, parent=N/A, isRoot=false, data=NA}
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.spo.SPORelation.insert(SPORelation.java:2243)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.store.AbstractTripleStore.addStatements(AbstractTripleStore.java:4032)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.rio.StatementBuffer.writeSPOs(StatementBuffer.java:1168)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.rio.StatementBuffer.addStatements(StatementBuffer.java:1032)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.rio.StatementBuffer.incrementalWrite(StatementBuffer.java:866)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.rio.StatementBuffer.add(StatementBuffer.java:951)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.rio.StatementBuffer.add(StatementBuffer.java:930)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.BigdataSail$BigdataSailConnection.addStatement(BigdataSail.java:2611)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sail.BigdataSail$BigdataSailConnection.addStatement(BigdataSail.java:2569)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sparql.ast.eval.AST2BOpUpdate.addOrRemoveStatement(AST2BOpUpdate.java:2033)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sparql.ast.eval.AST2BOpUpdate.convertDeleteInsert(AST2BOpUpdate.java:989)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sparql.ast.eval.AST2BOpUpdate.convertUpdateSwitch(AST2BOpUpdate.java:417)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sparql.ast.eval.AST2BOpUpdate.convertUpdate(AST2BOpUpdate.java:279)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.sparql.ast.eval.ASTEvalHelper.executeUpdate(ASTEvalHelper.java:1295)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ... 9 more
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: Caused by: java.util.concurrent.ExecutionException: java.lang.NullPointerException: leaf=com.bigdata.btree.Leaf@22bfc1f9#-5826724432438073(deleted){ isDirty=false, isDeleted=true, addr=-5826724432438073, parent=N/A, isRoot=false, data=NA}
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.util.concurrent.FutureTask.report(FutureTask.java:122)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at java.util.concurrent.FutureTask.get(FutureTask.java:188)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.spo.SPORelation.logFuture(SPORelation.java:2269)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.spo.SPORelation.insert(SPORelation.java:2224)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ... 22 more
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: Caused by: java.lang.NullPointerException: leaf=com.bigdata.btree.Leaf@22bfc1f9#-5826724432438073(deleted){ isDirty=false, isDeleted=true, addr=-5826724432438073, parent=N/A, isRoot=false, data=NA}
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.btree.Leaf.getKeys(Leaf.java:180)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.btree.Leaf.lookup(Leaf.java:850)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.btree.Node.lookup(Node.java:940)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.btree.Node.lookup(Node.java:940)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.btree.AbstractBTree.lookup(AbstractBTree.java:2376)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.btree.AbstractBTree.lookup(AbstractBTree.java:2304)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.spo.SPOIndexWriteProc.apply(SPOIndexWriteProc.java:232)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.btree.UnisolatedReadWriteIndex.submit(UnisolatedReadWriteIndex.java:703)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.spo.SPOIndexWriter.call(SPOIndexWriter.java:328)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: at com.bigdata.rdf.spo.SPOIndexWriter.call(SPOIndexWriter.java:68)
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ... 4 more
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: Query: base <https://test-sybx-dc443.syapse.com/ <https://test-sybx-dc443.syapse.com/>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix owl: <http://www.w3.org/2002/07/owl# <http://www.w3.org/2002/07/owl#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix s: </bdm/api/>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns# <http://www.w3.org/1999/02/22-rdf-syntax-ns#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix bds: <http://www.bigdata.com/rdf/search# <http://www.bigdata.com/rdf/search#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix xsd: <http://www.w3.org/2001/XMLSchema# <http://www.w3.org/2001/XMLSchema#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix rdfs: <http://www.w3.org/2000/01/rdf-schema# <http://www.w3.org/2000/01/rdf-schema#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix skos: <http://www.w3.org/2004/02/skos/core# <http://www.w3.org/2004/02/skos/core#>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix dc: <http://purl.org/dc/elements/1.1/ <http://purl.org/dc/elements/1.1/>>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: prefix syapse: </graph/syapse#>
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: DELETE {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subOld <https://test-sybx-dc443.syapse.com/graph/syapse#broader <https://test-sybx-dc443.syapse.com/graph/syapse#broader>> ?superOld .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: WHERE
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subOld <https://test-sybx-dc443.syapse.com/graph/syapse#broader <https://test-sybx-dc443.syapse.com/graph/syapse#broader>> ?superOld .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: } ;
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: INSERT {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew <https://test-sybx-dc443.syapse.com/graph/syapse#broader <https://test-sybx-dc443.syapse.com/graph/syapse#broader>> ?superNew .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: WHERE
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew rdf:type <http://www.w3.org/2004/02/skos/core#Concept <http://www.w3.org/2004/02/skos/core#Concept>> .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew skos:broader * ?superNew .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?superNew rdf:type <http://www.w3.org/2004/02/skos/core#Concept <http://www.w3.org/2004/02/skos/core#Concept>> .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: hint:Prior hint:runLast true .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: } ;
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: INSERT {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew <https://test-sybx-dc443.syapse.com/graph/syapse#broader <https://test-sybx-dc443.syapse.com/graph/syapse#broader>> ?superNew .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: WHERE
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: GRAPH <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target# <https://test-sybx-dc443.syapse.com/graph/vocabulary/mesh/molecular_target#>> {
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?superNew rdf:type <http://www.w3.org/2004/02/skos/core#Concept <http://www.w3.org/2004/02/skos/core#Concept>> .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: }
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew skos:broader * ?superNew .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: ?subNew rdf:type <http://www.w3.org/2004/02/skos/core#Concept <http://www.w3.org/2004/02/skos/core#Concept>> .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: hint:Prior hint:runLast true .
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out:
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: } ;
[sybx2-ue1e-internal-test-sybx-dc443.syapse.com <http://sybx2-ue1e-internal-test-sybx-dc443.syapse.com/>] out: |
