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From: Antoni M. <ant...@qu...> - 2014-08-15 14:17:50
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Hi,
I have a list of URIs. I want to get all triples whose subjects are the given URIs. To do that I use:
CONSTRUCT { ?s ?p ?o . } WHERE { ?s ?p ?o. FILTER (?s in ($MY_LIST)) }
I iterate over the result triples. For each triple, if the object is an URI I add it to a set. Then I use that set to generate a similar query to get triples on the second hop from the input uris. Then another query to get triples on the third hop. In my application code I remember all URIs to make sure I never request information about a resource more than once. I can also filter out predicates that I don't want to follow (like rdf:type).
This seems to work with three queries. The problem is that those lists can get pretty large (thousands) and the SPARQL query that I push over the network gets large as well. My question is: how to do it faster? How to get triples up to n hops from the given set of starting points.
I've tried the following:
CONSTRUCT { ?s ?p ?o . } WHERE {
{ ?s ?p ?o . FILTER (?s in ($MY_LIST)) }
UNION
{ ?start ?p1 ?s . ?s ?p ?o. FILTER (?start in ($MY_LIST)) }
UNION
{ ?start ?p1 ?o1 . ?o1 ?p2 ?s . ?s ?p ?o . FILTER (?start in ($MY_LIST)) }
}
CONSTRUCT { ?s ?p1 ?o1 . ?o1 ?p2 ?o2 . ?o2 ?p3 ?o3 . }
WHERE {
?s ?p1 ?o1 .
OPTIONAL {
?o1 ?p2 ?o2 .
OPTIONAL {
?o2 ?p3 ?o3 .
}
}
FILTER (?s in ($MY_LIST))
}
Both are MUCH too slow. Only the iterative version stays within seconds on my dataset. The simple unions and optionals like the ones above go well beyond minutes, variants that filter out certain predicates, or those that try to avoid returning the same triples more than once seem even slower.
What is the fastest way to do that in Bigdata?
I use bigdata 1.2.3, deployed as a .war on Tomcat.
Cheers,
--
Antoni Myłka
Software Engineer
Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40
http://www.quantinum.com - Bee for Business
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From: Bryan T. <br...@sy...> - 2014-08-15 14:46:10
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If you use the 1.3.1 release, you have access to the vertex-centric API of the GASService.[1]. This is designed to support a wide variety of graph traversal patterns and can be used transparently from SPARQL. See the examples on that wiki page. Thanks, Bryan [1] http://wiki.bigdata.com/wiki/index.php/RDF_GAS_API ---- Bryan Thompson Chief Scientist & Founder SYSTAP, LLC 4501 Tower Road Greensboro, NC 27410 br...@sy... http://bigdata.com http://mapgraph.io CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. On Fri, Aug 15, 2014 at 10:17 AM, Antoni Myłka <ant...@qu...> wrote: > Hi, > > I have a list of URIs. I want to get all triples whose subjects are the given URIs. To do that I use: > > CONSTRUCT { ?s ?p ?o . } WHERE { ?s ?p ?o. FILTER (?s in ($MY_LIST)) } > > I iterate over the result triples. For each triple, if the object is an URI I add it to a set. Then I use that set to generate a similar query to get triples on the second hop from the input uris. Then another query to get triples on the third hop. In my application code I remember all URIs to make sure I never request information about a resource more than once. I can also filter out predicates that I don't want to follow (like rdf:type). > > This seems to work with three queries. The problem is that those lists can get pretty large (thousands) and the SPARQL query that I push over the network gets large as well. My question is: how to do it faster? How to get triples up to n hops from the given set of starting points. > > I've tried the following: > > CONSTRUCT { ?s ?p ?o . } WHERE { > { ?s ?p ?o . FILTER (?s in ($MY_LIST)) } > UNION > { ?start ?p1 ?s . ?s ?p ?o. FILTER (?start in ($MY_LIST)) } > UNION > { ?start ?p1 ?o1 . ?o1 ?p2 ?s . ?s ?p ?o . FILTER (?start in ($MY_LIST)) } > } > > CONSTRUCT { ?s ?p1 ?o1 . ?o1 ?p2 ?o2 . ?o2 ?p3 ?o3 . } > WHERE { > ?s ?p1 ?o1 . > OPTIONAL { > ?o1 ?p2 ?o2 . > OPTIONAL { > ?o2 ?p3 ?o3 . > } > } > FILTER (?s in ($MY_LIST)) > } > > Both are MUCH too slow. Only the iterative version stays within seconds on my dataset. The simple unions and optionals like the ones above go well beyond minutes, variants that filter out certain predicates, or those that try to avoid returning the same triples more than once seem even slower. > > What is the fastest way to do that in Bigdata? > > I use bigdata 1.2.3, deployed as a .war on Tomcat. > > Cheers, > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers |
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From: Mike P. <mi...@sy...> - 2014-08-15 15:02:29
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Sounds like a perfect job for the GAS engine. http://wiki.bigdata.com/wiki/index.php/RDF_GAS_API --- Mike Personick Managing Partner Systap, LLC www.systap.com 801-243-3678 skype: mike.personick On Fri, Aug 15, 2014 at 10:17 AM, Antoni Myłka <ant...@qu...> wrote: > Hi, > > I have a list of URIs. I want to get all triples whose subjects are the > given URIs. To do that I use: > > CONSTRUCT { ?s ?p ?o . } WHERE { ?s ?p ?o. FILTER (?s in ($MY_LIST)) } > > I iterate over the result triples. For each triple, if the object is an > URI I add it to a set. Then I use that set to generate a similar query to > get triples on the second hop from the input uris. Then another query to > get triples on the third hop. In my application code I remember all URIs to > make sure I never request information about a resource more than once. I > can also filter out predicates that I don't want to follow (like rdf:type). > > This seems to work with three queries. The problem is that those lists can > get pretty large (thousands) and the SPARQL query that I push over the > network gets large as well. My question is: how to do it faster? How to get > triples up to n hops from the given set of starting points. > > I've tried the following: > > CONSTRUCT { ?s ?p ?o . } WHERE { > { ?s ?p ?o . FILTER (?s in ($MY_LIST)) } > UNION > { ?start ?p1 ?s . ?s ?p ?o. FILTER (?start in ($MY_LIST)) } > UNION > { ?start ?p1 ?o1 . ?o1 ?p2 ?s . ?s ?p ?o . FILTER (?start in ($MY_LIST)) } > } > > CONSTRUCT { ?s ?p1 ?o1 . ?o1 ?p2 ?o2 . ?o2 ?p3 ?o3 . } > WHERE { > ?s ?p1 ?o1 . > OPTIONAL { > ?o1 ?p2 ?o2 . > OPTIONAL { > ?o2 ?p3 ?o3 . > } > } > FILTER (?s in ($MY_LIST)) > } > > Both are MUCH too slow. Only the iterative version stays within seconds on > my dataset. The simple unions and optionals like the ones above go well > beyond minutes, variants that filter out certain predicates, or those that > try to avoid returning the same triples more than once seem even slower. > > What is the fastest way to do that in Bigdata? > > I use bigdata 1.2.3, deployed as a .war on Tomcat. > > Cheers, > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > |
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From: Antoni M. <ant...@qu...> - 2014-08-18 08:37:28
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Hi I'm trying to experiment with the BFS program. The example "BFS with extracted subgraph" seems most interesting to me. I do this: curl -X POST 'http://localhost:28080/bigdata/namespace/our.namespace/sparql' -o out.xml \ --data-urlencode 'query=PREFIX gas: <http://www.bigdata.com/rdf/gas#> SELECT ?depth ?out ?p ?o WHERE { SERVICE gas:service { gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . gas:program gas:in <my-starting-point> . gas:program gas:out ?out . gas:program gas:out1 ?depth . gas:program gas:maxIterations 1 . } ?out ?p ?o . }' But the out.xml file contains an exception where the root cause is (Full stack trace below): Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) ... 15 more It seems like some configuration issue. Is there anything I must or can't put in the configuration files before I can use GAS? I also don't quite understand why there are two configuration files: RWStore.properties and GraphStore.properties. What is the relation between them? Is a "graph store" something separate from a normal RDF store? -- Antoni Myłka Software Engineer Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 http://www.quantinum.com - Bee for Business PREFIX gas: <http://www.bigdata.com/rdf/gas#> SELECT ?depth ?out ?p ?o WHERE { SERVICE gas:service { gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . gas:program gas:in <my-starting-point> . gas:program gas:out ?out . gas:program gas:out1 ?depth . gas:program gas:out2 ?predecessor . gas:program gas:maxIterations 1 . } ?out ?p ?o . } java.util.concurrent.ExecutionException: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.rdf.sail.webapp.QueryServlet.doQuery(QueryServlet.java:625) at com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:182) at com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237) at com.bigdata.rdf.sail.webapp.MultiTenancyServlet.doPost(MultiTenancyServlet.java:135) at javax.servlet.http.HttpServlet.service(HttpServlet.java:646) at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040) at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607) at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:314) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) at java.lang.Thread.run(Unknown Source) Caused by: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1191) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:500) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) ... 1 more Caused by: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:188) at org.openrdf.query.impl.TupleQueryResultImpl.hasNext(TupleQueryResultImpl.java:90) at org.openrdf.query.QueryResultUtil.report(QueryResultUtil.java:52) at org.openrdf.repository.sail.SailTupleQuery.evaluate(SailTupleQuery.java:63) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$TupleQueryTask.doQuery(BigdataRDFContext.java:1310) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1164) ... 5 more Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1523) at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator._hasNext(BlockingBuffer.java:1710) at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.hasNext(BlockingBuffer.java:1563) at com.bigdata.striterator.AbstractChunkedResolverator._hasNext(AbstractChunkedResolverator.java:365) at com.bigdata.striterator.AbstractChunkedResolverator.hasNext(AbstractChunkedResolverator.java:341) at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:134) ... 10 more Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1454) ... 15 more Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:59) at com.bigdata.rdf.sail.RunningQueryCloseableIterator.close(RunningQueryCloseableIterator.java:73) at com.bigdata.rdf.sail.RunningQueryCloseableIterator.hasNext(RunningQueryCloseableIterator.java:82) at com.bigdata.striterator.ChunkedWrappedIterator.hasNext(ChunkedWrappedIterator.java:197) at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:222) at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:197) ... 4 more Caused by: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.util.concurrent.Haltable.get(Haltable.java:273) at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:1477) at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:104) at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:46) ... 9 more Caused by: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1335) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTaskWrapper.run(ChunkedRunningQuery.java:894) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at com.bigdata.concurrent.FutureTaskMon.run(FutureTaskMon.java:63) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkFutureTask.run(ChunkedRunningQuery.java:789) ... 3 more Caused by: java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1315) ... 8 more Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.doServiceCallWithConstant(ServiceCallJoin.java:341) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:293) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:205) at java.util.concurrent.FutureTask.run(Unknown Source) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1314) ... 8 more Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:743) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:606) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:542) at java.util.concurrent.FutureTask.run(Unknown Source) ... 3 more Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:329) at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:236) at com.bigdata.rdf.graph.impl.GASContext.scatterEdges(GASContext.java:604) at com.bigdata.rdf.graph.impl.GASContext.doRound(GASContext.java:391) at com.bigdata.rdf.graph.impl.GASContext.call(GASContext.java:240) at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:837) at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:414) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doBigdataServiceCall(ServiceCallJoin.java:756) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:697) ... 6 more Caused by: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:982) at com.bigdata.relation.locator.DefaultResourceLocator.cacheMiss(DefaultResourceLocator.java:464) at com.bigdata.relation.locator.DefaultResourceLocator.locate(DefaultResourceLocator.java:333) at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.resolveKB(BigdataGASEngine.java:301) at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getKB(BigdataGASEngine.java:272) at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getEdges(BigdataGASEngine.java:687) at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:744) at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:700) ... 4 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.GeneratedConstructorAccessor27.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) at java.lang.reflect.Constructor.newInstance(Unknown Source) at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:963) ... 11 more Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) ... 15 more |
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From: Antoni M. <ant...@qu...> - 2014-08-18 09:34:57
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Hi, The exception doesn't appear when I switch from JRE 8 to JRE 7. The query seems to work. Best Regards, -- Antoni Myłka Software Engineer Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 http://www.quantinum.com - Bee for Business ----- Ursprüngliche Mail ----- Von: "Antoni Myłka" <ant...@qu...> An: big...@li... Gesendet: Montag, 18. August 2014 10:37:17 Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources Hi I'm trying to experiment with the BFS program. The example "BFS with extracted subgraph" seems most interesting to me. I do this: curl -X POST 'http://localhost:28080/bigdata/namespace/our.namespace/sparql' -o out.xml \ --data-urlencode 'query=PREFIX gas: <http://www.bigdata.com/rdf/gas#> SELECT ?depth ?out ?p ?o WHERE { SERVICE gas:service { gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . gas:program gas:in <my-starting-point> . gas:program gas:out ?out . gas:program gas:out1 ?depth . gas:program gas:maxIterations 1 . } ?out ?p ?o . }' But the out.xml file contains an exception where the root cause is (Full stack trace below): Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) ... 15 more It seems like some configuration issue. Is there anything I must or can't put in the configuration files before I can use GAS? I also don't quite understand why there are two configuration files: RWStore.properties and GraphStore.properties. What is the relation between them? Is a "graph store" something separate from a normal RDF store? -- Antoni Myłka Software Engineer Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 http://www.quantinum.com - Bee for Business PREFIX gas: <http://www.bigdata.com/rdf/gas#> SELECT ?depth ?out ?p ?o WHERE { SERVICE gas:service { gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . gas:program gas:in <my-starting-point> . gas:program gas:out ?out . gas:program gas:out1 ?depth . gas:program gas:out2 ?predecessor . gas:program gas:maxIterations 1 . } ?out ?p ?o . } java.util.concurrent.ExecutionException: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.rdf.sail.webapp.QueryServlet.doQuery(QueryServlet.java:625) at com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:182) at com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237) at com.bigdata.rdf.sail.webapp.MultiTenancyServlet.doPost(MultiTenancyServlet.java:135) at javax.servlet.http.HttpServlet.service(HttpServlet.java:646) at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040) at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607) at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:314) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) at java.lang.Thread.run(Unknown Source) Caused by: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1191) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:500) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) ... 1 more Caused by: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:188) at org.openrdf.query.impl.TupleQueryResultImpl.hasNext(TupleQueryResultImpl.java:90) at org.openrdf.query.QueryResultUtil.report(QueryResultUtil.java:52) at org.openrdf.repository.sail.SailTupleQuery.evaluate(SailTupleQuery.java:63) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$TupleQueryTask.doQuery(BigdataRDFContext.java:1310) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1164) ... 5 more Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1523) at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator._hasNext(BlockingBuffer.java:1710) at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.hasNext(BlockingBuffer.java:1563) at com.bigdata.striterator.AbstractChunkedResolverator._hasNext(AbstractChunkedResolverator.java:365) at com.bigdata.striterator.AbstractChunkedResolverator.hasNext(AbstractChunkedResolverator.java:341) at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:134) ... 10 more Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1454) ... 15 more Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:59) at com.bigdata.rdf.sail.RunningQueryCloseableIterator.close(RunningQueryCloseableIterator.java:73) at com.bigdata.rdf.sail.RunningQueryCloseableIterator.hasNext(RunningQueryCloseableIterator.java:82) at com.bigdata.striterator.ChunkedWrappedIterator.hasNext(ChunkedWrappedIterator.java:197) at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:222) at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:197) ... 4 more Caused by: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.util.concurrent.Haltable.get(Haltable.java:273) at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:1477) at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:104) at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:46) ... 9 more Caused by: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1335) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTaskWrapper.run(ChunkedRunningQuery.java:894) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at com.bigdata.concurrent.FutureTaskMon.run(FutureTaskMon.java:63) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkFutureTask.run(ChunkedRunningQuery.java:789) ... 3 more Caused by: java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1315) ... 8 more Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.doServiceCallWithConstant(ServiceCallJoin.java:341) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:293) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:205) at java.util.concurrent.FutureTask.run(Unknown Source) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1314) ... 8 more Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:743) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:606) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:542) at java.util.concurrent.FutureTask.run(Unknown Source) ... 3 more Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:329) at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:236) at com.bigdata.rdf.graph.impl.GASContext.scatterEdges(GASContext.java:604) at com.bigdata.rdf.graph.impl.GASContext.doRound(GASContext.java:391) at com.bigdata.rdf.graph.impl.GASContext.call(GASContext.java:240) at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:837) at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:414) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doBigdataServiceCall(ServiceCallJoin.java:756) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:697) ... 6 more Caused by: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:982) at com.bigdata.relation.locator.DefaultResourceLocator.cacheMiss(DefaultResourceLocator.java:464) at com.bigdata.relation.locator.DefaultResourceLocator.locate(DefaultResourceLocator.java:333) at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.resolveKB(BigdataGASEngine.java:301) at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getKB(BigdataGASEngine.java:272) at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getEdges(BigdataGASEngine.java:687) at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:744) at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:700) ... 4 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.GeneratedConstructorAccessor27.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) at java.lang.reflect.Constructor.newInstance(Unknown Source) at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:963) ... 11 more Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) ... 15 more ------------------------------------------------------------------------------ _______________________________________________ Bigdata-developers mailing list Big...@li... https://lists.sourceforge.net/lists/listinfo/bigdata-developers |
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From: Antoni M. <ant...@qu...> - 2014-08-18 11:25:33
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Hi, Yet another update. I still get the exceptions. It doesn't seem to depend on the JVM. The query works, but only if I load data, restart the server and then do the query. Then, after the first update, I start getting the exceptions. That's why it started working with curl after a restart of Tomcat with a different JVM. The moment I fired up my app, which started writing stuff to the store and doing queries - the exceptions reappeared. Is it a bug? Do I need to do anything between loading data and doing GAS queries? Best regards, -- Antoni Myłka Software Engineer Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 http://www.quantinum.com - Bee for Business ----- Ursprüngliche Mail ----- Von: "Antoni Myłka" <ant...@qu...> An: big...@li... Gesendet: Montag, 18. August 2014 11:34:46 Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources Hi, The exception doesn't appear when I switch from JRE 8 to JRE 7. The query seems to work. Best Regards, -- Antoni Myłka Software Engineer Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 http://www.quantinum.com - Bee for Business ----- Ursprüngliche Mail ----- Von: "Antoni Myłka" <ant...@qu...> An: big...@li... Gesendet: Montag, 18. August 2014 10:37:17 Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources Hi I'm trying to experiment with the BFS program. The example "BFS with extracted subgraph" seems most interesting to me. I do this: curl -X POST 'http://localhost:28080/bigdata/namespace/our.namespace/sparql' -o out.xml \ --data-urlencode 'query=PREFIX gas: <http://www.bigdata.com/rdf/gas#> SELECT ?depth ?out ?p ?o WHERE { SERVICE gas:service { gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . gas:program gas:in <my-starting-point> . gas:program gas:out ?out . gas:program gas:out1 ?depth . gas:program gas:maxIterations 1 . } ?out ?p ?o . }' But the out.xml file contains an exception where the root cause is (Full stack trace below): Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) ... 15 more It seems like some configuration issue. Is there anything I must or can't put in the configuration files before I can use GAS? I also don't quite understand why there are two configuration files: RWStore.properties and GraphStore.properties. What is the relation between them? Is a "graph store" something separate from a normal RDF store? -- Antoni Myłka Software Engineer Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 http://www.quantinum.com - Bee for Business PREFIX gas: <http://www.bigdata.com/rdf/gas#> SELECT ?depth ?out ?p ?o WHERE { SERVICE gas:service { gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . gas:program gas:in <my-starting-point> . gas:program gas:out ?out . gas:program gas:out1 ?depth . gas:program gas:out2 ?predecessor . gas:program gas:maxIterations 1 . } ?out ?p ?o . } java.util.concurrent.ExecutionException: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.rdf.sail.webapp.QueryServlet.doQuery(QueryServlet.java:625) at com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:182) at com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237) at com.bigdata.rdf.sail.webapp.MultiTenancyServlet.doPost(MultiTenancyServlet.java:135) at javax.servlet.http.HttpServlet.service(HttpServlet.java:646) at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040) at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607) at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:314) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) at java.lang.Thread.run(Unknown Source) Caused by: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1191) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:500) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) ... 1 more Caused by: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:188) at org.openrdf.query.impl.TupleQueryResultImpl.hasNext(TupleQueryResultImpl.java:90) at org.openrdf.query.QueryResultUtil.report(QueryResultUtil.java:52) at org.openrdf.repository.sail.SailTupleQuery.evaluate(SailTupleQuery.java:63) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$TupleQueryTask.doQuery(BigdataRDFContext.java:1310) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1164) ... 5 more Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1523) at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator._hasNext(BlockingBuffer.java:1710) at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.hasNext(BlockingBuffer.java:1563) at com.bigdata.striterator.AbstractChunkedResolverator._hasNext(AbstractChunkedResolverator.java:365) at com.bigdata.striterator.AbstractChunkedResolverator.hasNext(AbstractChunkedResolverator.java:341) at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:134) ... 10 more Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1454) ... 15 more Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:59) at com.bigdata.rdf.sail.RunningQueryCloseableIterator.close(RunningQueryCloseableIterator.java:73) at com.bigdata.rdf.sail.RunningQueryCloseableIterator.hasNext(RunningQueryCloseableIterator.java:82) at com.bigdata.striterator.ChunkedWrappedIterator.hasNext(ChunkedWrappedIterator.java:197) at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:222) at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:197) ... 4 more Caused by: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.util.concurrent.Haltable.get(Haltable.java:273) at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:1477) at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:104) at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:46) ... 9 more Caused by: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1335) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTaskWrapper.run(ChunkedRunningQuery.java:894) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at com.bigdata.concurrent.FutureTaskMon.run(FutureTaskMon.java:63) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkFutureTask.run(ChunkedRunningQuery.java:789) ... 3 more Caused by: java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1315) ... 8 more Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.doServiceCallWithConstant(ServiceCallJoin.java:341) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:293) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:205) at java.util.concurrent.FutureTask.run(Unknown Source) at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1314) ... 8 more Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:743) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:606) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:542) at java.util.concurrent.FutureTask.run(Unknown Source) ... 3 more Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:329) at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:236) at com.bigdata.rdf.graph.impl.GASContext.scatterEdges(GASContext.java:604) at com.bigdata.rdf.graph.impl.GASContext.doRound(GASContext.java:391) at com.bigdata.rdf.graph.impl.GASContext.call(GASContext.java:240) at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:837) at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:414) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doBigdataServiceCall(ServiceCallJoin.java:756) at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:697) ... 6 more Caused by: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:982) at com.bigdata.relation.locator.DefaultResourceLocator.cacheMiss(DefaultResourceLocator.java:464) at com.bigdata.relation.locator.DefaultResourceLocator.locate(DefaultResourceLocator.java:333) at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.resolveKB(BigdataGASEngine.java:301) at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getKB(BigdataGASEngine.java:272) at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getEdges(BigdataGASEngine.java:687) at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:744) at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:700) ... 4 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.GeneratedConstructorAccessor27.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) at java.lang.reflect.Constructor.newInstance(Unknown Source) at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:963) ... 11 more Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) ... 15 more ------------------------------------------------------------------------------ _______________________________________________ Bigdata-developers mailing list Big...@li... https://lists.sourceforge.net/lists/listinfo/bigdata-developers ------------------------------------------------------------------------------ _______________________________________________ Bigdata-developers mailing list Big...@li... https://lists.sourceforge.net/lists/listinfo/bigdata-developers |
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From: Bryan T. <br...@sy...> - 2014-08-18 12:13:36
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The RWStore.properties is used by the war under a variety of deployment models. The GraphStore,properties is used by a single ant target and could probably be replaced by the use of the RWStore.properties file. Are you configuring the kb instance with full read/write transaction support or incremental truth maintenance? Both of those use a temporary store and might account for the exception. Try using unisolated indices (do not specify the bigdata sail option ISOLATABLE_INDICES) and try turning off incremental truth maintenance. Let us know which one is responsible for the issue and then we can file a ticket for this. Bryan > On Aug 18, 2014, at 7:25 AM, Antoni Mylka <ant...@qu...> wrote: > > Hi, > > Yet another update. I still get the exceptions. It doesn't seem to depend on the JVM. > > The query works, but only if I load data, restart the server and then do the query. Then, after the first update, I start getting the exceptions. That's why it started working with curl after a restart of Tomcat with a different JVM. The moment I fired up my app, which started writing stuff to the store and doing queries - the exceptions reappeared. > > Is it a bug? Do I need to do anything between loading data and doing GAS queries? > > Best regards, > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > ----- Ursprüngliche Mail ----- > Von: "Antoni Myłka" <ant...@qu...> > An: big...@li... > Gesendet: Montag, 18. August 2014 11:34:46 > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources > > Hi, > > The exception doesn't appear when I switch from JRE 8 to JRE 7. The query seems to work. > > Best Regards, > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > ----- Ursprüngliche Mail ----- > Von: "Antoni Myłka" <ant...@qu...> > An: big...@li... > Gesendet: Montag, 18. August 2014 10:37:17 > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources > > Hi > > I'm trying to experiment with the BFS program. The example "BFS with extracted subgraph" seems most interesting to me. I do this: > > curl -X POST 'http://localhost:28080/bigdata/namespace/our.namespace/sparql' -o out.xml \ > --data-urlencode 'query=PREFIX gas: <http://www.bigdata.com/rdf/gas#> > SELECT ?depth ?out ?p ?o > WHERE { > SERVICE gas:service { > gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . > gas:program gas:in <my-starting-point> . > gas:program gas:out ?out . > gas:program gas:out1 ?depth . > gas:program gas:maxIterations 1 . > } > ?out ?p ?o . > }' > > > But the out.xml file contains an exception where the root cause is (Full stack trace below): > > Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal > at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) > ... 15 more > > It seems like some configuration issue. Is there anything I must or can't put in the configuration files before I can use GAS? I also don't quite understand why there are two configuration files: RWStore.properties and GraphStore.properties. What is the relation between them? Is a "graph store" something separate from a normal RDF store? > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > > PREFIX gas: <http://www.bigdata.com/rdf/gas#> > SELECT ?depth ?out ?p ?o > WHERE { > SERVICE gas:service { > gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . > gas:program gas:in <my-starting-point> . > gas:program gas:out ?out . > gas:program gas:out1 ?depth . > gas:program gas:out2 ?predecessor . > gas:program gas:maxIterations 1 . > } > ?out ?p ?o . > } > java.util.concurrent.ExecutionException: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.rdf.sail.webapp.QueryServlet.doQuery(QueryServlet.java:625) > at com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:182) > at com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237) > at com.bigdata.rdf.sail.webapp.MultiTenancyServlet.doPost(MultiTenancyServlet.java:135) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:646) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) > at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303) > at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) > at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) > at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220) > at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122) > at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501) > at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) > at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) > at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) > at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116) > at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040) > at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607) > at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:314) > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) > at java.lang.Thread.run(Unknown Source) > Caused by: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1191) > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:500) > at java.util.concurrent.FutureTask.run(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > ... 1 more > Caused by: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:188) > at org.openrdf.query.impl.TupleQueryResultImpl.hasNext(TupleQueryResultImpl.java:90) > at org.openrdf.query.QueryResultUtil.report(QueryResultUtil.java:52) > at org.openrdf.repository.sail.SailTupleQuery.evaluate(SailTupleQuery.java:63) > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$TupleQueryTask.doQuery(BigdataRDFContext.java:1310) > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1164) > ... 5 more > Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1523) > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator._hasNext(BlockingBuffer.java:1710) > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.hasNext(BlockingBuffer.java:1563) > at com.bigdata.striterator.AbstractChunkedResolverator._hasNext(AbstractChunkedResolverator.java:365) > at com.bigdata.striterator.AbstractChunkedResolverator.hasNext(AbstractChunkedResolverator.java:341) > at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:134) > ... 10 more > Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1454) > ... 15 more > Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:59) > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.close(RunningQueryCloseableIterator.java:73) > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.hasNext(RunningQueryCloseableIterator.java:82) > at com.bigdata.striterator.ChunkedWrappedIterator.hasNext(ChunkedWrappedIterator.java:197) > at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:222) > at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:197) > ... 4 more > Caused by: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.util.concurrent.Haltable.get(Haltable.java:273) > at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:1477) > at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:104) > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:46) > ... 9 more > Caused by: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1335) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTaskWrapper.run(ChunkedRunningQuery.java:894) > at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) > at java.util.concurrent.FutureTask.run(Unknown Source) > at com.bigdata.concurrent.FutureTaskMon.run(FutureTaskMon.java:63) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkFutureTask.run(ChunkedRunningQuery.java:789) > ... 3 more > Caused by: java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1315) > ... 8 more > Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.doServiceCallWithConstant(ServiceCallJoin.java:341) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:293) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:205) > at java.util.concurrent.FutureTask.run(Unknown Source) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1314) > ... 8 more > Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:743) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:606) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:542) > at java.util.concurrent.FutureTask.run(Unknown Source) > ... 3 more > Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:329) > at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:236) > at com.bigdata.rdf.graph.impl.GASContext.scatterEdges(GASContext.java:604) > at com.bigdata.rdf.graph.impl.GASContext.doRound(GASContext.java:391) > at com.bigdata.rdf.graph.impl.GASContext.call(GASContext.java:240) > at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:837) > at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:414) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doBigdataServiceCall(ServiceCallJoin.java:756) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:697) > ... 6 more > Caused by: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:982) > at com.bigdata.relation.locator.DefaultResourceLocator.cacheMiss(DefaultResourceLocator.java:464) > at com.bigdata.relation.locator.DefaultResourceLocator.locate(DefaultResourceLocator.java:333) > at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.resolveKB(BigdataGASEngine.java:301) > at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getKB(BigdataGASEngine.java:272) > at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getEdges(BigdataGASEngine.java:687) > at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:744) > at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:700) > ... 4 more > Caused by: java.lang.reflect.InvocationTargetException > at sun.reflect.GeneratedConstructorAccessor27.newInstance(Unknown Source) > at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) > at java.lang.reflect.Constructor.newInstance(Unknown Source) > at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:963) > ... 11 more > Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal > at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) > ... 15 more > > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > ------------------------------------------------------------------------------ > 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From: Antoni M. <ant...@qu...> - 2014-08-18 12:10:08
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Hi, Thanks for your answer. Our RWStore.properties file doesn't contain any entries for com.bigdata.rdf.sail.truthMaintenance nor com.bigdata.rdf.sail.isolatableIndices. AFAIU this means that the default values are used, which is true for truth maintenance and false for isolatable indices. I'll try to do another attempt without truth maintenance. AFAIU the inference closure is always computed when transaction is committed. If I need to write and then read within the same transaction - I need to call BigdataSailConnection.computeClosure. I don't, so in my case this change won't have any influence on the application code. I can just flip the switch in the configuration and the app won't notice. You seem to say, that "full read/write transaction support" is only available with the "isolatableIndices" configuration property. We don't use it, but we thought that calling setAutoCommit(false) and then commit() on the RepositoryConnection gives us transaction isolation "out of the box". Doesn't it? -- Antoni Myłka Software Engineer Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 http://www.quantinum.com - Bee for Business ----- Ursprüngliche Mail ----- Von: "Bryan Thompson" <br...@sy...> An: "Antoni Mylka" <ant...@qu...> CC: big...@li... Gesendet: Montag, 18. August 2014 13:45:41 Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources The RWStore.properties is used by the war under a variety of deployment models. The GraphStore,properties is used by a single ant target and could probably be replaced by the use of the RWStore.properties file. Are you configuring the kb instance with full read/write transaction support or incremental truth maintenance? Both of those use a temporary store and might account for the exception. Try using unisolated indices (do not specify the bigdata sail option ISOLATABLE_INDICES) and try turning off incremental truth maintenance. Let us know which one is responsible for the issue and then we can file a ticket for this. Bryan > On Aug 18, 2014, at 7:25 AM, Antoni Mylka <ant...@qu...> wrote: > > Hi, > > Yet another update. I still get the exceptions. It doesn't seem to depend on the JVM. > > The query works, but only if I load data, restart the server and then do the query. Then, after the first update, I start getting the exceptions. That's why it started working with curl after a restart of Tomcat with a different JVM. The moment I fired up my app, which started writing stuff to the store and doing queries - the exceptions reappeared. > > Is it a bug? Do I need to do anything between loading data and doing GAS queries? > > Best regards, > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > ----- Ursprüngliche Mail ----- > Von: "Antoni Myłka" <ant...@qu...> > An: big...@li... > Gesendet: Montag, 18. August 2014 11:34:46 > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources > > Hi, > > The exception doesn't appear when I switch from JRE 8 to JRE 7. The query seems to work. > > Best Regards, > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > ----- Ursprüngliche Mail ----- > Von: "Antoni Myłka" <ant...@qu...> > An: big...@li... > Gesendet: Montag, 18. August 2014 10:37:17 > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources > > Hi > > I'm trying to experiment with the BFS program. The example "BFS with extracted subgraph" seems most interesting to me. I do this: > > curl -X POST 'http://localhost:28080/bigdata/namespace/our.namespace/sparql' -o out.xml \ > --data-urlencode 'query=PREFIX gas: <http://www.bigdata.com/rdf/gas#> > SELECT ?depth ?out ?p ?o > WHERE { > SERVICE gas:service { > gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . > gas:program gas:in <my-starting-point> . > gas:program gas:out ?out . > gas:program gas:out1 ?depth . > gas:program gas:maxIterations 1 . > } > ?out ?p ?o . > }' > > > But the out.xml file contains an exception where the root cause is (Full stack trace below): > > Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal > at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) > ... 15 more > > It seems like some configuration issue. Is there anything I must or can't put in the configuration files before I can use GAS? I also don't quite understand why there are two configuration files: RWStore.properties and GraphStore.properties. What is the relation between them? Is a "graph store" something separate from a normal RDF store? > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > > PREFIX gas: <http://www.bigdata.com/rdf/gas#> > SELECT ?depth ?out ?p ?o > WHERE { > SERVICE gas:service { > gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . > gas:program gas:in <my-starting-point> . > gas:program gas:out ?out . > gas:program gas:out1 ?depth . > gas:program gas:out2 ?predecessor . > gas:program gas:maxIterations 1 . > } > ?out ?p ?o . > } > java.util.concurrent.ExecutionException: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.rdf.sail.webapp.QueryServlet.doQuery(QueryServlet.java:625) > at com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:182) > at com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237) > at com.bigdata.rdf.sail.webapp.MultiTenancyServlet.doPost(MultiTenancyServlet.java:135) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:646) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) > at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303) > at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) > at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) > at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220) > at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122) > at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501) > at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) > at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) > at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) > at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116) > at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040) > at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607) > at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:314) > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) > at java.lang.Thread.run(Unknown Source) > Caused by: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1191) > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:500) > at java.util.concurrent.FutureTask.run(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > ... 1 more > Caused by: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:188) > at org.openrdf.query.impl.TupleQueryResultImpl.hasNext(TupleQueryResultImpl.java:90) > at org.openrdf.query.QueryResultUtil.report(QueryResultUtil.java:52) > at org.openrdf.repository.sail.SailTupleQuery.evaluate(SailTupleQuery.java:63) > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$TupleQueryTask.doQuery(BigdataRDFContext.java:1310) > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1164) > ... 5 more > Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1523) > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator._hasNext(BlockingBuffer.java:1710) > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.hasNext(BlockingBuffer.java:1563) > at com.bigdata.striterator.AbstractChunkedResolverator._hasNext(AbstractChunkedResolverator.java:365) > at com.bigdata.striterator.AbstractChunkedResolverator.hasNext(AbstractChunkedResolverator.java:341) > at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:134) > ... 10 more > Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1454) > ... 15 more > Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:59) > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.close(RunningQueryCloseableIterator.java:73) > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.hasNext(RunningQueryCloseableIterator.java:82) > at com.bigdata.striterator.ChunkedWrappedIterator.hasNext(ChunkedWrappedIterator.java:197) > at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:222) > at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:197) > ... 4 more > Caused by: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.util.concurrent.Haltable.get(Haltable.java:273) > at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:1477) > at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:104) > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:46) > ... 9 more > Caused by: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1335) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTaskWrapper.run(ChunkedRunningQuery.java:894) > at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) > at java.util.concurrent.FutureTask.run(Unknown Source) > at com.bigdata.concurrent.FutureTaskMon.run(FutureTaskMon.java:63) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkFutureTask.run(ChunkedRunningQuery.java:789) > ... 3 more > Caused by: java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1315) > ... 8 more > Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.doServiceCallWithConstant(ServiceCallJoin.java:341) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:293) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:205) > at java.util.concurrent.FutureTask.run(Unknown Source) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1314) > ... 8 more > Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:743) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:606) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:542) > at java.util.concurrent.FutureTask.run(Unknown Source) > ... 3 more > Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:329) > at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:236) > at com.bigdata.rdf.graph.impl.GASContext.scatterEdges(GASContext.java:604) > at com.bigdata.rdf.graph.impl.GASContext.doRound(GASContext.java:391) > at com.bigdata.rdf.graph.impl.GASContext.call(GASContext.java:240) > at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:837) > at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:414) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doBigdataServiceCall(ServiceCallJoin.java:756) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:697) > ... 6 more > Caused by: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:982) > at com.bigdata.relation.locator.DefaultResourceLocator.cacheMiss(DefaultResourceLocator.java:464) > at com.bigdata.relation.locator.DefaultResourceLocator.locate(DefaultResourceLocator.java:333) > at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.resolveKB(BigdataGASEngine.java:301) > at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getKB(BigdataGASEngine.java:272) > at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getEdges(BigdataGASEngine.java:687) > at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:744) > at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:700) > ... 4 more > Caused by: java.lang.reflect.InvocationTargetException > at sun.reflect.GeneratedConstructorAccessor27.newInstance(Unknown Source) > at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) > at java.lang.reflect.Constructor.newInstance(Unknown Source) > at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:963) > ... 11 more > Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal > at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) > ... 15 more > > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > ------------------------------------------------------------------------------ > 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From: Bryan T. <br...@sy...> - 2014-08-18 12:14:17
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This has been tested without truth maintenance, so I suspect that the truth maintenance is the problem. The GASEngine tunnels some abstractions and some of those assumptions might be violated in this case. Can you create a simple test case that fails, attach it to a ticket, and send me a link to the ticket? Thanks, Bryan ---- Bryan Thompson Chief Scientist & Founder SYSTAP, LLC 4501 Tower Road Greensboro, NC 27410 br...@sy... http://bigdata.com http://mapgraph.io CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. On Mon, Aug 18, 2014 at 8:09 AM, Antoni Mylka <ant...@qu...> wrote: > Hi, > > Thanks for your answer. > > Our RWStore.properties file doesn't contain any entries for > com.bigdata.rdf.sail.truthMaintenance nor > com.bigdata.rdf.sail.isolatableIndices. AFAIU this means that the default > values are used, which is true for truth maintenance and false for > isolatable indices. > > I'll try to do another attempt without truth maintenance. AFAIU the > inference closure is always computed when transaction is committed. If I > need to write and then read within the same transaction - I need to call > BigdataSailConnection.computeClosure. I don't, so in my case this change > won't have any influence on the application code. I can just flip the > switch in the configuration and the app won't notice. > > You seem to say, that "full read/write transaction support" is only > available with the "isolatableIndices" configuration property. We don't use > it, but we thought that calling setAutoCommit(false) and then commit() on > the RepositoryConnection gives us transaction isolation "out of the box". > Doesn't it? > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > ----- Ursprüngliche Mail ----- > Von: "Bryan Thompson" <br...@sy...> > An: "Antoni Mylka" <ant...@qu...> > CC: big...@li... > Gesendet: Montag, 18. August 2014 13:45:41 > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a > given set of resources > > The RWStore.properties is used by the war under a variety of deployment > models. The GraphStore,properties is used by a single ant target and could > probably be replaced by the use of the RWStore.properties file. > > Are you configuring the kb instance with full read/write transaction > support or incremental truth maintenance? Both of those use a temporary > store and might account for the exception. Try using unisolated indices (do > not specify the bigdata sail option ISOLATABLE_INDICES) and try turning off > incremental truth maintenance. Let us know which one is responsible for > the issue and then we can file a ticket for this. > > Bryan > > > On Aug 18, 2014, at 7:25 AM, Antoni Mylka <ant...@qu...> > wrote: > > > > Hi, > > > > Yet another update. I still get the exceptions. It doesn't seem to > depend on the JVM. > > > > The query works, but only if I load data, restart the server and then do > the query. Then, after the first update, I start getting the exceptions. > That's why it started working with curl after a restart of Tomcat with a > different JVM. The moment I fired up my app, which started writing stuff to > the store and doing queries - the exceptions reappeared. > > > > Is it a bug? Do I need to do anything between loading data and doing GAS > queries? > > > > Best regards, > > > > -- > > Antoni Myłka > > Software Engineer > > > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > > http://www.quantinum.com - Bee for Business > > > > ----- Ursprüngliche Mail ----- > > Von: "Antoni Myłka" <ant...@qu...> > > An: big...@li... > > Gesendet: Montag, 18. August 2014 11:34:46 > > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a > given set of resources > > > > Hi, > > > > The exception doesn't appear when I switch from JRE 8 to JRE 7. The > query seems to work. > > > > Best Regards, > > > > -- > > Antoni Myłka > > Software Engineer > > > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > > http://www.quantinum.com - Bee for Business > > > > ----- Ursprüngliche Mail ----- > > Von: "Antoni Myłka" <ant...@qu...> > > An: big...@li... > > Gesendet: Montag, 18. August 2014 10:37:17 > > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a > given set of resources > > > > Hi > > > > I'm trying to experiment with the BFS program. The example "BFS with > extracted subgraph" seems most interesting to me. I do this: > > > > curl -X POST ' > http://localhost:28080/bigdata/namespace/our.namespace/sparql' -o out.xml > \ > > --data-urlencode 'query=PREFIX gas: <http://www.bigdata.com/rdf/gas#> > > SELECT ?depth ?out ?p ?o > > WHERE { > > SERVICE gas:service { > > gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . > > gas:program gas:in <my-starting-point> . > > gas:program gas:out ?out . > > gas:program gas:out1 ?depth . > > gas:program gas:maxIterations 1 . > > } > > ?out ?p ?o . > > }' > > > > > > But the out.xml file contains an exception where the root cause is (Full > stack trace below): > > > > Caused by: java.lang.ClassCastException: > com.bigdata.journal.TemporaryStore cannot be cast to > com.bigdata.journal.Journal > > at > com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) > > ... 15 more > > > > It seems like some configuration issue. Is there anything I must or > can't put in the configuration files before I can use GAS? I also don't > quite understand why there are two configuration files: RWStore.properties > and GraphStore.properties. What is the relation between them? Is a "graph > store" something separate from a normal RDF store? > > > > -- > > Antoni Myłka > > Software Engineer > > > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > > http://www.quantinum.com - Bee for Business > > > > > > PREFIX gas: <http://www.bigdata.com/rdf/gas#> > > SELECT ?depth ?out ?p ?o > > WHERE { > > SERVICE gas:service { > > gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . > > gas:program gas:in <my-starting-point> . > > gas:program gas:out ?out . > > gas:program gas:out1 ?depth . > > gas:program gas:out2 ?predecessor . > > gas:program gas:maxIterations 1 . > > } > > ?out ?p ?o . > > } > > java.util.concurrent.ExecutionException: java.lang.Exception: > org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at java.util.concurrent.FutureTask.report(Unknown Source) > > at java.util.concurrent.FutureTask.get(Unknown Source) > > at > com.bigdata.rdf.sail.webapp.QueryServlet.doQuery(QueryServlet.java:625) > > at > com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:182) > > at > com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237) > > at > com.bigdata.rdf.sail.webapp.MultiTenancyServlet.doPost(MultiTenancyServlet.java:135) > > at javax.servlet.http.HttpServlet.service(HttpServlet.java:646) > > at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) > > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303) > > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > > at > org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) > > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) > > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220) > > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122) > > at > org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501) > > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) > > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) > > at > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) > > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116) > > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > > at > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040) > > at > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607) > > at > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:314) > > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown > Source) > > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown > Source) > > at > org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) > > at java.lang.Thread.run(Unknown Source) > > Caused by: java.lang.Exception: > org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1191) > > at > com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:500) > > at java.util.concurrent.FutureTask.run(Unknown Source) > > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown > Source) > > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown > Source) > > ... 1 more > > Caused by: org.openrdf.query.QueryEvaluationException: > java.lang.RuntimeException: java.util.concurrent.ExecutionException: > java.lang.RuntimeException: java.util.concurrent.ExecutionException: > java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:188) > > at > org.openrdf.query.impl.TupleQueryResultImpl.hasNext(TupleQueryResultImpl.java:90) > > at > org.openrdf.query.QueryResultUtil.report(QueryResultUtil.java:52) > > at > org.openrdf.repository.sail.SailTupleQuery.evaluate(SailTupleQuery.java:63) > > at > com.bigdata.rdf.sail.webapp.BigdataRDFContext$TupleQueryTask.doQuery(BigdataRDFContext.java:1310) > > at > com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1164) > > ... 5 more > > Caused by: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1523) > > at > com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator._hasNext(BlockingBuffer.java:1710) > > at > com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.hasNext(BlockingBuffer.java:1563) > > at > com.bigdata.striterator.AbstractChunkedResolverator._hasNext(AbstractChunkedResolverator.java:365) > > at > com.bigdata.striterator.AbstractChunkedResolverator.hasNext(AbstractChunkedResolverator.java:341) > > at > com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:134) > > ... 10 more > > Caused by: java.util.concurrent.ExecutionException: > java.lang.RuntimeException: java.util.concurrent.ExecutionException: > java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at java.util.concurrent.FutureTask.report(Unknown Source) > > at java.util.concurrent.FutureTask.get(Unknown Source) > > at > com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1454) > > ... 15 more > > Caused by: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:59) > > at > com.bigdata.rdf.sail.RunningQueryCloseableIterator.close(RunningQueryCloseableIterator.java:73) > > at > com.bigdata.rdf.sail.RunningQueryCloseableIterator.hasNext(RunningQueryCloseableIterator.java:82) > > at > com.bigdata.striterator.ChunkedWrappedIterator.hasNext(ChunkedWrappedIterator.java:197) > > at > com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:222) > > at > com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:197) > > ... 4 more > > Caused by: java.util.concurrent.ExecutionException: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at com.bigdata.util.concurrent.Haltable.get(Haltable.java:273) > > at > com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:1477) > > at > com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:104) > > at > com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:46) > > ... 9 more > > Caused by: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1335) > > at > com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTaskWrapper.run(ChunkedRunningQuery.java:894) > > at java.util.concurrent.Executors$RunnableAdapter.call(Unknown > Source) > > at java.util.concurrent.FutureTask.run(Unknown Source) > > at com.bigdata.concurrent.FutureTaskMon.run(FutureTaskMon.java:63) > > at > com.bigdata.bop.engine.ChunkedRunningQuery$ChunkFutureTask.run(ChunkedRunningQuery.java:789) > > ... 3 more > > Caused by: java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at java.util.concurrent.FutureTask.report(Unknown Source) > > at java.util.concurrent.FutureTask.get(Unknown Source) > > at > com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1315) > > ... 8 more > > Caused by: java.util.concurrent.ExecutionException: > java.lang.RuntimeException: java.util.concurrent.ExecutionException: > java.lang.RuntimeException: Could not instantiate relation: > java.lang.reflect.InvocationTargetException > > at java.util.concurrent.FutureTask.report(Unknown Source) > > at java.util.concurrent.FutureTask.get(Unknown Source) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.doServiceCallWithConstant(ServiceCallJoin.java:341) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:293) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:205) > > at java.util.concurrent.FutureTask.run(Unknown Source) > > at > com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1314) > > ... 8 more > > Caused by: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:743) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:606) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:542) > > at java.util.concurrent.FutureTask.run(Unknown Source) > > ... 3 more > > Caused by: java.util.concurrent.ExecutionException: > java.lang.RuntimeException: Could not instantiate relation: > java.lang.reflect.InvocationTargetException > > at java.util.concurrent.FutureTask.report(Unknown Source) > > at java.util.concurrent.FutureTask.get(Unknown Source) > > at > com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:329) > > at > com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:236) > > at > com.bigdata.rdf.graph.impl.GASContext.scatterEdges(GASContext.java:604) > > at > com.bigdata.rdf.graph.impl.GASContext.doRound(GASContext.java:391) > > at com.bigdata.rdf.graph.impl.GASContext.call(GASContext.java:240) > > at > com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:837) > > at > com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:414) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doBigdataServiceCall(ServiceCallJoin.java:756) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:697) > > ... 6 more > > Caused by: java.lang.RuntimeException: Could not instantiate relation: > java.lang.reflect.InvocationTargetException > > at > com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:982) > > at > com.bigdata.relation.locator.DefaultResourceLocator.cacheMiss(DefaultResourceLocator.java:464) > > at > com.bigdata.relation.locator.DefaultResourceLocator.locate(DefaultResourceLocator.java:333) > > at > com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.resolveKB(BigdataGASEngine.java:301) > > at > com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getKB(BigdataGASEngine.java:272) > > at > com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getEdges(BigdataGASEngine.java:687) > > at > com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:744) > > at > com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:700) > > ... 4 more > > Caused by: java.lang.reflect.InvocationTargetException > > at sun.reflect.GeneratedConstructorAccessor27.newInstance(Unknown > Source) > > at > sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) > > at java.lang.reflect.Constructor.newInstance(Unknown Source) > > at > com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:963) > > ... 11 more > > Caused by: java.lang.ClassCastException: > com.bigdata.journal.TemporaryStore cannot be cast to > com.bigdata.journal.Journal > > at > com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) > > ... 15 more > > > > > > > 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From: Antoni M. <ant...@qu...> - 2014-08-18 13:54:22
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Hi, Thanks for the answer. I'll see what I can do about the test. What is really "truth maintenance" from the user point of view? I understand it as follows, please confirm: There are two kinds of statements in the triple store: explicit and entailed ones. Truth maintenance means automatic, synchronous recomputation of all entailments after each modification of the explicit statements. When this feature is turned on, every SPARQL UPDATE or LOAD will recompute the inferred statements synchronously, so that after the modification operation finishes - I can count on the inferred statements being there. Both the modification and inference are a single transaction. Other clients don't ever see the state between the modification and the inference. When it's turned off - the set of inferred statements is not modified after I modify the explicit statements. New entailments will not appear in the dataset, old entailments will not be removed. Inference must be triggered explicitly, on a whole graph. It's possible to do both in one transaction but it's also possible to do them in two transactions. In the second case, the intermediate, inconsistent state will be visible to anyone for a while, unless it's prevented by other means. Truth maintenance is a server-side feature. No temporary data is kept in the client-side connection object. It's not affected by my using one RepositoryConnection for all updates and queries in the application or creating a connection for each query and update and then closing it. It's also orthogonal to the client-side autoCommit flag. I can have autocommit or not, with or without truth maintenance. I'll get the same behavior by using curl and POSTing SPARQL queries. -- Antoni Myłka Software Engineer Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 http://www.quantinum.com - Bee for Business ----- Ursprüngliche Mail ----- Von: "Bryan Thompson" <br...@sy...> An: "Antoni Mylka" <ant...@qu...> CC: "Big...@li..." <big...@li...> Gesendet: Montag, 18. August 2014 14:14:08 Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources This has been tested without truth maintenance, so I suspect that the truth maintenance is the problem. The GASEngine tunnels some abstractions and some of those assumptions might be violated in this case. Can you create a simple test case that fails, attach it to a ticket, and send me a link to the ticket? Thanks, Bryan ---- Bryan Thompson Chief Scientist & Founder SYSTAP, LLC 4501 Tower Road Greensboro, NC 27410 br...@sy... http://bigdata.com http://mapgraph.io CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. On Mon, Aug 18, 2014 at 8:09 AM, Antoni Mylka < ant...@qu... > wrote: Hi, Thanks for your answer. Our RWStore.properties file doesn't contain any entries for com.bigdata.rdf.sail.truthMaintenance nor com.bigdata.rdf.sail.isolatableIndices. AFAIU this means that the default values are used, which is true for truth maintenance and false for isolatable indices. I'll try to do another attempt without truth maintenance. AFAIU the inference closure is always computed when transaction is committed. If I need to write and then read within the same transaction - I need to call BigdataSailConnection.computeClosure. I don't, so in my case this change won't have any influence on the application code. I can just flip the switch in the configuration and the app won't notice. You seem to say, that "full read/write transaction support" is only available with the "isolatableIndices" configuration property. We don't use it, but we thought that calling setAutoCommit(false) and then commit() on the RepositoryConnection gives us transaction isolation "out of the box". Doesn't it? -- Antoni Myłka Software Engineer Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 http://www.quantinum.com - Bee for Business ----- Ursprüngliche Mail ----- Von: "Bryan Thompson" < br...@sy... > An: "Antoni Mylka" < ant...@qu... > CC: big...@li... Gesendet: Montag, 18. August 2014 13:45:41 Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources The RWStore.properties is used by the war under a variety of deployment models. The GraphStore,properties is used by a single ant target and could probably be replaced by the use of the RWStore.properties file. Are you configuring the kb instance with full read/write transaction support or incremental truth maintenance? Both of those use a temporary store and might account for the exception. Try using unisolated indices (do not specify the bigdata sail option ISOLATABLE_INDICES) and try turning off incremental truth maintenance. Let us know which one is responsible for the issue and then we can file a ticket for this. Bryan > On Aug 18, 2014, at 7:25 AM, Antoni Mylka < ant...@qu... > wrote: > > Hi, > > Yet another update. I still get the exceptions. It doesn't seem to depend on the JVM. > > The query works, but only if I load data, restart the server and then do the query. Then, after the first update, I start getting the exceptions. That's why it started working with curl after a restart of Tomcat with a different JVM. The moment I fired up my app, which started writing stuff to the store and doing queries - the exceptions reappeared. > > Is it a bug? Do I need to do anything between loading data and doing GAS queries? > > Best regards, > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > ----- Ursprüngliche Mail ----- > Von: "Antoni Myłka" < ant...@qu... > > An: big...@li... > Gesendet: Montag, 18. August 2014 11:34:46 > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources > > Hi, > > The exception doesn't appear when I switch from JRE 8 to JRE 7. The query seems to work. > > Best Regards, > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > ----- Ursprüngliche Mail ----- > Von: "Antoni Myłka" < ant...@qu... > > An: big...@li... > Gesendet: Montag, 18. August 2014 10:37:17 > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a given set of resources > > Hi > > I'm trying to experiment with the BFS program. The example "BFS with extracted subgraph" seems most interesting to me. I do this: > > curl -X POST ' http://localhost:28080/bigdata/namespace/our.namespace/sparql ' -o out.xml \ > --data-urlencode 'query=PREFIX gas: < http://www.bigdata.com/rdf/gas# > > SELECT ?depth ?out ?p ?o > WHERE { > SERVICE gas:service { > gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . > gas:program gas:in <my-starting-point> . > gas:program gas:out ?out . > gas:program gas:out1 ?depth . > gas:program gas:maxIterations 1 . > } > ?out ?p ?o . > }' > > > But the out.xml file contains an exception where the root cause is (Full stack trace below): > > Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal > at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) > ... 15 more > > It seems like some configuration issue. Is there anything I must or can't put in the configuration files before I can use GAS? I also don't quite understand why there are two configuration files: RWStore.properties and GraphStore.properties. What is the relation between them? Is a "graph store" something separate from a normal RDF store? > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > > PREFIX gas: < http://www.bigdata.com/rdf/gas# > > SELECT ?depth ?out ?p ?o > WHERE { > SERVICE gas:service { > gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . > gas:program gas:in <my-starting-point> . > gas:program gas:out ?out . > gas:program gas:out1 ?depth . > gas:program gas:out2 ?predecessor . > gas:program gas:maxIterations 1 . > } > ?out ?p ?o . > } > java.util.concurrent.ExecutionException: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.rdf.sail.webapp.QueryServlet.doQuery(QueryServlet.java:625) > at com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:182) > at com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237) > at com.bigdata.rdf.sail.webapp.MultiTenancyServlet.doPost(MultiTenancyServlet.java:135) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:646) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) > at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303) > at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) > at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) > at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220) > at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122) > at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501) > at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) > at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) > at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) > at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116) > at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040) > at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607) > at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:314) > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) > at java.lang.Thread.run(Unknown Source) > Caused by: java.lang.Exception: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1191) > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:500) > at java.util.concurrent.FutureTask.run(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > ... 1 more > Caused by: org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:188) > at org.openrdf.query.impl.TupleQueryResultImpl.hasNext(TupleQueryResultImpl.java:90) > at org.openrdf.query.QueryResultUtil.report(QueryResultUtil.java:52) > at org.openrdf.repository.sail.SailTupleQuery.evaluate(SailTupleQuery.java:63) > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$TupleQueryTask.doQuery(BigdataRDFContext.java:1310) > at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1164) > ... 5 more > Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1523) > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator._hasNext(BlockingBuffer.java:1710) > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.hasNext(BlockingBuffer.java:1563) > at com.bigdata.striterator.AbstractChunkedResolverator._hasNext(AbstractChunkedResolverator.java:365) > at com.bigdata.striterator.AbstractChunkedResolverator.hasNext(AbstractChunkedResolverator.java:341) > at com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:134) > ... 10 more > Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1454) > ... 15 more > Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:59) > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.close(RunningQueryCloseableIterator.java:73) > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.hasNext(RunningQueryCloseableIterator.java:82) > at com.bigdata.striterator.ChunkedWrappedIterator.hasNext(ChunkedWrappedIterator.java:197) > at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:222) > at com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:197) > ... 4 more > Caused by: java.util.concurrent.ExecutionException: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.util.concurrent.Haltable.get(Haltable.java:273) > at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:1477) > at com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:104) > at com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:46) > ... 9 more > Caused by: java.lang.Exception: task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, cause=java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1335) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTaskWrapper.run(ChunkedRunningQuery.java:894) > at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) > at java.util.concurrent.FutureTask.run(Unknown Source) > at com.bigdata.concurrent.FutureTaskMon.run(FutureTaskMon.java:63) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkFutureTask.run(ChunkedRunningQuery.java:789) > ... 3 more > Caused by: java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1315) > ... 8 more > Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.doServiceCallWithConstant(ServiceCallJoin.java:341) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:293) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:205) > at java.util.concurrent.FutureTask.run(Unknown Source) > at com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1314) > ... 8 more > Caused by: java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:743) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:606) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:542) > at java.util.concurrent.FutureTask.run(Unknown Source) > ... 3 more > Caused by: java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at java.util.concurrent.FutureTask.report(Unknown Source) > at java.util.concurrent.FutureTask.get(Unknown Source) > at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:329) > at com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:236) > at com.bigdata.rdf.graph.impl.GASContext.scatterEdges(GASContext.java:604) > at com.bigdata.rdf.graph.impl.GASContext.doRound(GASContext.java:391) > at com.bigdata.rdf.graph.impl.GASContext.call(GASContext.java:240) > at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:837) > at com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:414) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doBigdataServiceCall(ServiceCallJoin.java:756) > at com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:697) > ... 6 more > Caused by: java.lang.RuntimeException: Could not instantiate relation: java.lang.reflect.InvocationTargetException > at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:982) > at com.bigdata.relation.locator.DefaultResourceLocator.cacheMiss(DefaultResourceLocator.java:464) > at com.bigdata.relation.locator.DefaultResourceLocator.locate(DefaultResourceLocator.java:333) > at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.resolveKB(BigdataGASEngine.java:301) > at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getKB(BigdataGASEngine.java:272) > at com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getEdges(BigdataGASEngine.java:687) > at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:744) > at com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:700) > ... 4 more > Caused by: java.lang.reflect.InvocationTargetException > at sun.reflect.GeneratedConstructorAccessor27.newInstance(Unknown Source) > at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) > at java.lang.reflect.Constructor.newInstance(Unknown Source) > at com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:963) > ... 11 more > Caused by: java.lang.ClassCastException: com.bigdata.journal.TemporaryStore cannot be cast to com.bigdata.journal.Journal > at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) > ... 15 more > > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers ------------------------------------------------------------------------------ _______________________________________________ Bigdata-developers mailing list Big...@li... https://lists.sourceforge.net/lists/listinfo/bigdata-developers |
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From: Bryan T. <br...@sy...> - 2014-08-18 14:10:13
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Pretty much. The truth maintenance is the minimal work required to keep the materialized entailments in sync with the add/drop of explicit statements. Bryan On Aug 18, 2014 8:54 AM, "Antoni Mylka" <ant...@qu...> wrote: > Hi, > > Thanks for the answer. I'll see what I can do about the test. > > What is really "truth maintenance" from the user point of view? > > I understand it as follows, please confirm: > > There are two kinds of statements in the triple store: explicit and > entailed ones. > > Truth maintenance means automatic, synchronous recomputation of all > entailments after each modification of the explicit statements. > > When this feature is turned on, every SPARQL UPDATE or LOAD will recompute > the inferred statements synchronously, so that after the modification > operation finishes - I can count on the inferred statements being there. > Both the modification and inference are a single transaction. Other clients > don't ever see the state between the modification and the inference. > > When it's turned off - the set of inferred statements is not modified > after I modify the explicit statements. New entailments will not appear in > the dataset, old entailments will not be removed. Inference must be > triggered explicitly, on a whole graph. It's possible to do both in one > transaction but it's also possible to do them in two transactions. In the > second case, the intermediate, inconsistent state will be visible to anyone > for a while, unless it's prevented by other means. > > Truth maintenance is a server-side feature. No temporary data is kept in > the client-side connection object. It's not affected by my using one > RepositoryConnection for all updates and queries in the application or > creating a connection for each query and update and then closing it. It's > also orthogonal to the client-side autoCommit flag. I can have autocommit > or not, with or without truth maintenance. I'll get the same behavior by > using curl and POSTing SPARQL queries. > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > ----- Ursprüngliche Mail ----- > Von: "Bryan Thompson" <br...@sy...> > An: "Antoni Mylka" <ant...@qu...> > CC: "Big...@li..." < > big...@li...> > Gesendet: Montag, 18. August 2014 14:14:08 > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a > given set of resources > > > This has been tested without truth maintenance, so I suspect that the > truth maintenance is the problem. The GASEngine tunnels some abstractions > and some of those assumptions might be violated in this case. > > > Can you create a simple test case that fails, attach it to a ticket, and > send me a link to the ticket? > > > Thanks, > Bryan > > > > > ---- > Bryan Thompson > > Chief Scientist & Founder > SYSTAP, LLC > > 4501 Tower Road > Greensboro, NC 27410 > > br...@sy... > > http://bigdata.com > > http://mapgraph.io > > > CONFIDENTIALITY NOTICE: This email and its contents and attachments are > for the sole use of the intended recipient(s) and are confidential or > proprietary to SYSTAP. Any unauthorized review, use, disclosure, > dissemination or copying of this email or its contents or attachments is > prohibited. If you have received this communication in error, please notify > the sender by reply email and permanently delete all copies of the email > and its contents and attachments. > > > On Mon, Aug 18, 2014 at 8:09 AM, Antoni Mylka < ant...@qu... > > wrote: > > > Hi, > > Thanks for your answer. > > Our RWStore.properties file doesn't contain any entries for > com.bigdata.rdf.sail.truthMaintenance nor > com.bigdata.rdf.sail.isolatableIndices. AFAIU this means that the default > values are used, which is true for truth maintenance and false for > isolatable indices. > > I'll try to do another attempt without truth maintenance. AFAIU the > inference closure is always computed when transaction is committed. If I > need to write and then read within the same transaction - I need to call > BigdataSailConnection.computeClosure. I don't, so in my case this change > won't have any influence on the application code. I can just flip the > switch in the configuration and the app won't notice. > > You seem to say, that "full read/write transaction support" is only > available with the "isolatableIndices" configuration property. We don't use > it, but we thought that calling setAutoCommit(false) and then commit() on > the RepositoryConnection gives us transaction isolation "out of the box". > Doesn't it? > > -- > Antoni Myłka > Software Engineer > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > http://www.quantinum.com - Bee for Business > > ----- Ursprüngliche Mail ----- > Von: "Bryan Thompson" < br...@sy... > > An: "Antoni Mylka" < ant...@qu... > > CC: big...@li... > Gesendet: Montag, 18. August 2014 13:45:41 > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a > given set of resources > > The RWStore.properties is used by the war under a variety of deployment > models. The GraphStore,properties is used by a single ant target and could > probably be replaced by the use of the RWStore.properties file. > > Are you configuring the kb instance with full read/write transaction > support or incremental truth maintenance? Both of those use a temporary > store and might account for the exception. Try using unisolated indices (do > not specify the bigdata sail option ISOLATABLE_INDICES) and try turning off > incremental truth maintenance. Let us know which one is responsible for the > issue and then we can file a ticket for this. > > Bryan > > > On Aug 18, 2014, at 7:25 AM, Antoni Mylka < ant...@qu... > > wrote: > > > > Hi, > > > > Yet another update. I still get the exceptions. It doesn't seem to > depend on the JVM. > > > > The query works, but only if I load data, restart the server and then do > the query. Then, after the first update, I start getting the exceptions. > That's why it started working with curl after a restart of Tomcat with a > different JVM. The moment I fired up my app, which started writing stuff to > the store and doing queries - the exceptions reappeared. > > > > Is it a bug? Do I need to do anything between loading data and doing GAS > queries? > > > > Best regards, > > > > -- > > Antoni Myłka > > Software Engineer > > > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > > http://www.quantinum.com - Bee for Business > > > > ----- Ursprüngliche Mail ----- > > Von: "Antoni Myłka" < ant...@qu... > > > An: big...@li... > > Gesendet: Montag, 18. August 2014 11:34:46 > > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a > given set of resources > > > > Hi, > > > > The exception doesn't appear when I switch from JRE 8 to JRE 7. The > query seems to work. > > > > Best Regards, > > > > -- > > Antoni Myłka > > Software Engineer > > > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > > http://www.quantinum.com - Bee for Business > > > > ----- Ursprüngliche Mail ----- > > Von: "Antoni Myłka" < ant...@qu... > > > An: big...@li... > > Gesendet: Montag, 18. August 2014 10:37:17 > > Betreff: Re: [Bigdata-developers] Getting triples up to 3 hops from a > given set of resources > > > > Hi > > > > I'm trying to experiment with the BFS program. The example "BFS with > extracted subgraph" seems most interesting to me. I do this: > > > > curl -X POST ' > http://localhost:28080/bigdata/namespace/our.namespace/sparql ' -o > out.xml \ > > --data-urlencode 'query=PREFIX gas: < http://www.bigdata.com/rdf/gas# > > > SELECT ?depth ?out ?p ?o > > WHERE { > > SERVICE gas:service { > > gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . > > gas:program gas:in <my-starting-point> . > > gas:program gas:out ?out . > > gas:program gas:out1 ?depth . > > gas:program gas:maxIterations 1 . > > } > > ?out ?p ?o . > > }' > > > > > > But the out.xml file contains an exception where the root cause is (Full > stack trace below): > > > > Caused by: java.lang.ClassCastException: > com.bigdata.journal.TemporaryStore cannot be cast to > com.bigdata.journal.Journal > > at > com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) > > ... 15 more > > > > It seems like some configuration issue. Is there anything I must or > can't put in the configuration files before I can use GAS? I also don't > quite understand why there are two configuration files: RWStore.properties > and GraphStore.properties. What is the relation between them? Is a "graph > store" something separate from a normal RDF store? > > > > -- > > Antoni Myłka > > Software Engineer > > > > Quantinum AG, Birkenweg 61, CH-3013 Bern - Fon +41 31 388 20 40 > > http://www.quantinum.com - Bee for Business > > > > > > PREFIX gas: < http://www.bigdata.com/rdf/gas# > > > SELECT ?depth ?out ?p ?o > > WHERE { > > SERVICE gas:service { > > gas:program gas:gasClass "com.bigdata.rdf.graph.analytics.BFS" . > > gas:program gas:in <my-starting-point> . > > gas:program gas:out ?out . > > gas:program gas:out1 ?depth . > > gas:program gas:out2 ?predecessor . > > gas:program gas:maxIterations 1 . > > } > > ?out ?p ?o . > > } > > java.util.concurrent.ExecutionException: java.lang.Exception: > org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at java.util.concurrent.FutureTask.report(Unknown Source) > > at java.util.concurrent.FutureTask.get(Unknown Source) > > at > com.bigdata.rdf.sail.webapp.QueryServlet.doQuery(QueryServlet.java:625) > > at com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:182) > > at com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237) > > at > com.bigdata.rdf.sail.webapp.MultiTenancyServlet.doPost(MultiTenancyServlet.java:135) > > at javax.servlet.http.HttpServlet.service(HttpServlet.java:646) > > at javax.servlet.http.HttpServlet.service(HttpServlet.java:727) > > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303) > > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > > at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) > > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) > > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220) > > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122) > > at > org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501) > > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) > > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) > > at > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) > > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116) > > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > > at > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1040) > > at > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607) > > at > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:314) > > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > > at > org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) > > at java.lang.Thread.run(Unknown Source) > > Caused by: java.lang.Exception: > org.openrdf.query.QueryEvaluationException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1191) > > at > com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:500) > > at java.util.concurrent.FutureTask.run(Unknown Source) > > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) > > ... 1 more > > Caused by: org.openrdf.query.QueryEvaluationException: > java.lang.RuntimeException: java.util.concurrent.ExecutionException: > java.lang.RuntimeException: java.util.concurrent.ExecutionException: > java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:188) > > at > org.openrdf.query.impl.TupleQueryResultImpl.hasNext(TupleQueryResultImpl.java:90) > > at org.openrdf.query.QueryResultUtil.report(QueryResultUtil.java:52) > > at > org.openrdf.repository.sail.SailTupleQuery.evaluate(SailTupleQuery.java:63) > > at > com.bigdata.rdf.sail.webapp.BigdataRDFContext$TupleQueryTask.doQuery(BigdataRDFContext.java:1310) > > at > com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1164) > > ... 5 more > > Caused by: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1523) > > at > com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator._hasNext(BlockingBuffer.java:1710) > > at > com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.hasNext(BlockingBuffer.java:1563) > > at > com.bigdata.striterator.AbstractChunkedResolverator._hasNext(AbstractChunkedResolverator.java:365) > > at > com.bigdata.striterator.AbstractChunkedResolverator.hasNext(AbstractChunkedResolverator.java:341) > > at > com.bigdata.rdf.sail.Bigdata2Sesame2BindingSetIterator.hasNext(Bigdata2Sesame2BindingSetIterator.java:134) > > ... 10 more > > Caused by: java.util.concurrent.ExecutionException: > java.lang.RuntimeException: java.util.concurrent.ExecutionException: > java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at java.util.concurrent.FutureTask.report(Unknown Source) > > at java.util.concurrent.FutureTask.get(Unknown Source) > > at > com.bigdata.relation.accesspath.BlockingBuffer$BlockingIterator.checkFuture(BlockingBuffer.java:1454) > > ... 15 more > > Caused by: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:59) > > at > com.bigdata.rdf.sail.RunningQueryCloseableIterator.close(RunningQueryCloseableIterator.java:73) > > at > com.bigdata.rdf.sail.RunningQueryCloseableIterator.hasNext(RunningQueryCloseableIterator.java:82) > > at > com.bigdata.striterator.ChunkedWrappedIterator.hasNext(ChunkedWrappedIterator.java:197) > > at > com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:222) > > at > com.bigdata.striterator.AbstractChunkedResolverator$ChunkConsumerTask.call(AbstractChunkedResolverator.java:197) > > ... 4 more > > Caused by: java.util.concurrent.ExecutionException: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at com.bigdata.util.concurrent.Haltable.get(Haltable.java:273) > > at > com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:1477) > > at > com.bigdata.bop.engine.AbstractRunningQuery.get(AbstractRunningQuery.java:104) > > at > com.bigdata.rdf.sail.RunningQueryCloseableIterator.checkFuture(RunningQueryCloseableIterator.java:46) > > ... 9 more > > Caused by: java.lang.Exception: > task=ChunkTask{query=d4747392-722c-46ab-80e2-e9fb27dddd7c,bopId=1,partitionId=-1,sinkId=3,altSinkId=null}, > cause=java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1335) > > at > com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTaskWrapper.run(ChunkedRunningQuery.java:894) > > at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) > > at java.util.concurrent.FutureTask.run(Unknown Source) > > at com.bigdata.concurrent.FutureTaskMon.run(FutureTaskMon.java:63) > > at > com.bigdata.bop.engine.ChunkedRunningQuery$ChunkFutureTask.run(ChunkedRunningQuery.java:789) > > ... 3 more > > Caused by: java.util.concurrent.ExecutionException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at java.util.concurrent.FutureTask.report(Unknown Source) > > at java.util.concurrent.FutureTask.get(Unknown Source) > > at > com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1315) > > ... 8 more > > Caused by: java.util.concurrent.ExecutionException: > java.lang.RuntimeException: java.util.concurrent.ExecutionException: > java.lang.RuntimeException: Could not instantiate relation: > java.lang.reflect.InvocationTargetException > > at java.util.concurrent.FutureTask.report(Unknown Source) > > at java.util.concurrent.FutureTask.get(Unknown Source) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.doServiceCallWithConstant(ServiceCallJoin.java:341) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:293) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask.call(ServiceCallJoin.java:205) > > at java.util.concurrent.FutureTask.run(Unknown Source) > > at > com.bigdata.bop.engine.ChunkedRunningQuery$ChunkTask.call(ChunkedRunningQuery.java:1314) > > ... 8 more > > Caused by: java.lang.RuntimeException: > java.util.concurrent.ExecutionException: java.lang.RuntimeException: Could > not instantiate relation: java.lang.reflect.InvocationTargetException > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:743) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:606) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.call(ServiceCallJoin.java:542) > > at java.util.concurrent.FutureTask.run(Unknown Source) > > ... 3 more > > Caused by: java.util.concurrent.ExecutionException: > java.lang.RuntimeException: Could not instantiate relation: > java.lang.reflect.InvocationTargetException > > at java.util.concurrent.FutureTask.report(Unknown Source) > > at java.util.concurrent.FutureTask.get(Unknown Source) > > at > com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:329) > > at > com.bigdata.rdf.graph.impl.GASEngine$ParallelFrontierStrategy.call(GASEngine.java:236) > > at > com.bigdata.rdf.graph.impl.GASContext.scatterEdges(GASContext.java:604) > > at com.bigdata.rdf.graph.impl.GASContext.doRound(GASContext.java:391) > > at com.bigdata.rdf.graph.impl.GASContext.call(GASContext.java:240) > > at > com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:837) > > at > com.bigdata.rdf.graph.impl.bd.GASService$GASServiceCall.call(GASService.java:414) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doBigdataServiceCall(ServiceCallJoin.java:756) > > at > com.bigdata.bop.controller.ServiceCallJoin$ChunkTask$ServiceCallTask.doServiceCall(ServiceCallJoin.java:697) > > ... 6 more > > Caused by: java.lang.RuntimeException: Could not instantiate relation: > java.lang.reflect.InvocationTargetException > > at > com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:982) > > at > com.bigdata.relation.locator.DefaultResourceLocator.cacheMiss(DefaultResourceLocator.java:464) > > at > com.bigdata.relation.locator.DefaultResourceLocator.locate(DefaultResourceLocator.java:333) > > at > com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.resolveKB(BigdataGASEngine.java:301) > > at > com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getKB(BigdataGASEngine.java:272) > > at > com.bigdata.rdf.graph.impl.bd.BigdataGASEngine$BigdataGraphAccessor.getEdges(BigdataGASEngine.java:687) > > at > com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:744) > > at > com.bigdata.rdf.graph.impl.GASContext$ScatterTask.call(GASContext.java:700) > > ... 4 more > > Caused by: java.lang.reflect.InvocationTargetException > > at sun.reflect.GeneratedConstructorAccessor27.newInstance(Unknown Source) > > at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown > Source) > > at java.lang.reflect.Constructor.newInstance(Unknown Source) > > at > com.bigdata.relation.locator.DefaultResourceLocator.newInstance(DefaultResourceLocator.java:963) > > ... 11 more > > Caused by: java.lang.ClassCastException: > com.bigdata.journal.TemporaryStore cannot be cast to > com.bigdata.journal.Journal > > at > com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:163) > > ... 15 more > > > > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > > Bigdata-developers mailing list > > Big...@li... > > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > > Bigdata-developers mailing list > > Big...@li... > > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > > Bigdata-developers mailing list > > Big...@li... > > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > |
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