Menu
▾
▴
bigdata-developers — List for bigdata developers
This list is closed, nobody may subscribe to it.
| 2010 |
Jan
|
Feb
(19) |
Mar
(8) |
Apr
(25) |
May
(16) |
Jun
(77) |
Jul
(131) |
Aug
(76) |
Sep
(30) |
Oct
(7) |
Nov
(3) |
Dec
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2011 |
Jan
|
Feb
|
Mar
|
Apr
|
May
(2) |
Jun
(2) |
Jul
(16) |
Aug
(3) |
Sep
(1) |
Oct
|
Nov
(7) |
Dec
(7) |
| 2012 |
Jan
(10) |
Feb
(1) |
Mar
(8) |
Apr
(6) |
May
(1) |
Jun
(3) |
Jul
(1) |
Aug
|
Sep
(1) |
Oct
|
Nov
(8) |
Dec
(2) |
| 2013 |
Jan
(5) |
Feb
(12) |
Mar
(2) |
Apr
(1) |
May
(1) |
Jun
(1) |
Jul
(22) |
Aug
(50) |
Sep
(31) |
Oct
(64) |
Nov
(83) |
Dec
(28) |
| 2014 |
Jan
(31) |
Feb
(18) |
Mar
(27) |
Apr
(39) |
May
(45) |
Jun
(15) |
Jul
(6) |
Aug
(27) |
Sep
(6) |
Oct
(67) |
Nov
(70) |
Dec
(1) |
| 2015 |
Jan
(3) |
Feb
(18) |
Mar
(22) |
Apr
(121) |
May
(42) |
Jun
(17) |
Jul
(8) |
Aug
(11) |
Sep
(26) |
Oct
(15) |
Nov
(66) |
Dec
(38) |
| 2016 |
Jan
(14) |
Feb
(59) |
Mar
(28) |
Apr
(44) |
May
(21) |
Jun
(12) |
Jul
(9) |
Aug
(11) |
Sep
(4) |
Oct
(2) |
Nov
(1) |
Dec
|
| 2017 |
Jan
(20) |
Feb
(7) |
Mar
(4) |
Apr
(18) |
May
(7) |
Jun
(3) |
Jul
(13) |
Aug
(2) |
Sep
(4) |
Oct
(9) |
Nov
(2) |
Dec
(5) |
| 2018 |
Jan
|
Feb
|
Mar
|
Apr
(2) |
May
|
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
| 2019 |
Jan
|
Feb
|
Mar
(1) |
Apr
|
May
|
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
|
From: Brad B. <be...@sy...> - 2015-12-09 02:54:38
|
Jim, I believe you could do this by overriding the Analyzer Factory Class [1] with your own implementation that does not filter stopwords [2]. Other may have more specific suggestions. [1] https://www.blazegraph.com/docs/api/com/bigdata/search/FullTextIndex.Options.html#ANALYZER_FACTORY_CLASS [2] https://www.blazegraph.com/docs/api/com/bigdata/search/IAnalyzerFactory.html Thanks, --Brad On Tue, Dec 8, 2015 at 9:12 PM, Jim Balhoff <ba...@gm...> wrote: > Hi, > > I was wondering if anyone could provide examples for how to set up the > Blazegraph properties file to configure options for the full text search. I > have looked through the various options in the JavaDoc, but I can’t quite > figure out the right properties file syntax for ‘stopwords=none’. Here is > what I am trying to do: > > I have a term in the database with rdfs:label "skeletal element of eye > region”. When users search for terms, I append a “*” to their input text by > default. However this is failing when the label contains a stopword like > “of”. So, searching with “skeletal element of” and “skeletal element*” do > find the term as a match, but “skeletal element of*” does not. Can I > disable stopwords entirely? > > Thanks, > Jim > > > > ------------------------------------------------------------------------------ > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > -- _______________ Brad Bebee CEO, Managing Partner SYSTAP, LLC e: be...@sy... m: 202.642.7961 f: 571.367.5000 w: www.blazegraph.com Blazegraph™ <http://www.blazegraph.com> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new technology to use GPUs to accelerate data-parallel graph analytics. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. |
|
From: Jim B. <ba...@gm...> - 2015-12-09 02:12:52
|
Hi, I was wondering if anyone could provide examples for how to set up the Blazegraph properties file to configure options for the full text search. I have looked through the various options in the JavaDoc, but I can’t quite figure out the right properties file syntax for ‘stopwords=none’. Here is what I am trying to do: I have a term in the database with rdfs:label "skeletal element of eye region”. When users search for terms, I append a “*” to their input text by default. However this is failing when the label contains a stopword like “of”. So, searching with “skeletal element of” and “skeletal element*” do find the term as a match, but “skeletal element of*” does not. Can I disable stopwords entirely? Thanks, Jim |
|
From: Brad B. <be...@sy...> - 2015-12-02 19:01:19
|
Jeremy, We are still on Java 7 for the moment. We have several users who have not yet migrated to Java 7. CI is run against Oracle/SUN JDK 1.7.0_79. We have run CI on Java 8 and there are not any known issues. With "mavenization" (to be previewed in open source soon), we can move to Java 8 for specific modules. This is how we're implementing the Tinkerpop 3 integration, for example. Thanks, --Brad On Wed, Dec 2, 2015 at 1:51 PM, Jeremy J Carroll <jj...@sy...> wrote: > > I finally got persuaded to switch to master branch and the mavenised > development …. > following: > > https://wiki.blazegraph.com/wiki/index.php/MavenNotes#Architecture > > One issue was that the java8 runtime I was using disliked the fastutil 6.5.16 > jar > > I resolved by downgrading to java7, but I suspect it is better to increase > the fastutil version dependency > > Does jenkins run with java7 or java8? > > Jeremy > > > > > > ------------------------------------------------------------------------------ > Go from Idea to Many App Stores Faster with Intel(R) XDK > Give your users amazing mobile app experiences with Intel(R) XDK. > Use one codebase in this all-in-one HTML5 development environment. > Design, debug & build mobile apps & 2D/3D high-impact games for multiple > OSs. > http://pubads.g.doubleclick.net/gampad/clk?id=254741911&iu=/4140 > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > -- _______________ Brad Bebee CEO, Managing Partner SYSTAP, LLC e: be...@sy... m: 202.642.7961 f: 571.367.5000 w: www.blazegraph.com Blazegraph™ <http://www.blazegraph.com> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new technology to use GPUs to accelerate data-parallel graph analytics. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. |
|
From: Jeremy J C. <jj...@sy...> - 2015-12-02 18:51:46
|
I finally got persuaded to switch to master branch and the mavenised development …. following: https://wiki.blazegraph.com/wiki/index.php/MavenNotes#Architecture <https://wiki.blazegraph.com/wiki/index.php/MavenNotes#Architecture> One issue was that the java8 runtime I was using disliked the fastutil 6.5.16 jar I resolved by downgrading to java7, but I suspect it is better to increase the fastutil version dependency Does jenkins run with java7 or java8? Jeremy |
|
From: Bryan T. <br...@sy...> - 2015-12-01 14:23:11
|
You need to update the IndexMetadata object for each index in the store (or
the namespace).
// clone the current metadata record for the live index.
final IndexMetadata indexMetadata = btree.getIndexMetadata()
.clone();
// ... apply changes.
// update the metadata associated with the btree
btree.setIndexMetadata(indexMetadata);
// ... commit the connection.
Bryan
----
Bryan Thompson
Chief Scientist & Founder
SYSTAP, LLC
4501 Tower Road
Greensboro, NC 27410
br...@sy...
http://blazegraph.com
http://blog.blazegraph.com
Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance
graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints
APIs. Blazegraph is now available with GPU acceleration using our disruptive
technology to accelerate data-parallel graph analytics and graph query.
CONFIDENTIALITY NOTICE: This email and its contents and attachments are
for the sole use of the intended recipient(s) and are confidential or
proprietary to SYSTAP. Any unauthorized review, use, disclosure,
dissemination or copying of this email or its contents or attachments is
prohibited. If you have received this communication in error, please notify
the sender by reply email and permanently delete all copies of the email
and its contents and attachments.
On Tue, Dec 1, 2015 at 1:10 AM, Jeremy J Carroll <jj...@sy...> wrote:
>
> On Nov 30, 2015, at 5:05 PM, Bryan Thompson <br...@sy...> wrote:
>
> For example, you could modify the write retention queue capacity for an
> index (but you need to modify the IndexMetadata object itself to do so) and
> the new value will take effect.
>
>
> This is one of the things I was trying to do: how do I go about it: do I
> need to write Java code?
>
> Jeremy
>
>
|
|
From: Jeremy J C. <jj...@sy...> - 2015-12-01 06:10:39
|
> On Nov 30, 2015, at 5:05 PM, Bryan Thompson <br...@sy...> wrote: > > For example, you could modify the write retention queue capacity for an index (but you need to modify the IndexMetadata object itself to do so) and the new value will take effect. This is one of the things I was trying to do: how do I go about it: do I need to write Java code? Jeremy |
|
From: Bryan T. <br...@sy...> - 2015-12-01 01:05:47
|
The general answer is "no". Beyond that, the answer is "sometimes" and "it depends". Some properties can be safely modified and their new values will be applied. For example, you could modify the write retention queue capacity for an index (but you need to modify the IndexMetadata object itself to do so) and the new value will take effect. Others can not be safely modified at all. For example, you can not change the RDF Value => IV encoding scheme for a namespace once it has been created (or more narrowly, this can not be changed if the change would cause the mapping to not be 1:1 for any RDF Values that have already been mapped). Some can be changed with more effort. For example, it is possible to enable truth maintenance for a namespace that was created without inference, but you must also take steps to ensure that the resulting namespace is coherent with respect to the entailments. I suspect the more interesting question is, do I need to do a data migration when rolling out performance updates to customers or can I just change some properties. The answer is still the same "it depends", but in this frame it is easier to look at the specific performance optimizations that you would like to deploy (after testing them out) and then at what steps are required to propagate those optimizations to your customers. Thanks, Bryan ---- Bryan Thompson Chief Scientist & Founder SYSTAP, LLC 4501 Tower Road Greensboro, NC 27410 br...@sy... http://blazegraph.com http://blog.blazegraph.com Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Blazegraph is now available with GPU acceleration using our disruptive technology to accelerate data-parallel graph analytics and graph query. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. On Mon, Nov 30, 2015 at 7:13 PM, Jeremy J Carroll <jj...@sy...> wrote: > > > I am reading > > https://wiki.blazegraph.com/wiki/index.php/IOOptimization > > which suggests several property changes I may make to improve performance. > > I understand that I can change my .properties file to realize these gains > on a new journal, by say dumping out the data and reloading it anew. > > Is there any way to provide the new property values to a pre-existing > journal, each of the namespaces seems to retain the property values from > when it was created > > thanks > > Jeremy > > > > ------------------------------------------------------------------------------ > Go from Idea to Many App Stores Faster with Intel(R) XDK > Give your users amazing mobile app experiences with Intel(R) XDK. > Use one codebase in this all-in-one HTML5 development environment. > Design, debug & build mobile apps & 2D/3D high-impact games for multiple > OSs. > http://pubads.g.doubleclick.net/gampad/clk?id=254741911&iu=/4140 > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > |
|
From: Jeremy J C. <jj...@sy...> - 2015-12-01 00:14:02
|
I am reading https://wiki.blazegraph.com/wiki/index.php/IOOptimization <https://wiki.blazegraph.com/wiki/index.php/IOOptimization> which suggests several property changes I may make to improve performance. I understand that I can change my .properties file to realize these gains on a new journal, by say dumping out the data and reloading it anew. Is there any way to provide the new property values to a pre-existing journal, each of the namespaces seems to retain the property values from when it was created thanks Jeremy |
|
From: Brad B. <be...@sy...> - 2015-11-30 19:05:18
|
Joakim, OK -- I created https://jira.blazegraph.com/browse/BLZG-1652 to track it. Thanks, --Brad On Mon, Nov 30, 2015 at 1:53 PM, Joakim Soderberg < joa...@bl...> wrote: > Hi Brad, > > I added: > > <dependency> > <groupId>org.eclipse.jetty</groupId> > <artifactId>jetty-proxy</artifactId> > <version>9.3.6.v20151106</version> > </dependency> > > to my project and now it’s fine. Codehaus seems discontinued though > > /Joakim > > On Nov 30, 2015, at 7:32 AM, Brad Bebee <be...@sy...> wrote: > > Joakim, > > Is this issue still occurring for you? > > Thanks, --Brad > > On Wed, Nov 25, 2015 at 1:55 PM, Joakim Soderberg < > joa...@bl...> wrote: > >> Hi >> After migrating to Blazegraph 1.5.3., >> >> <dependency> >> <groupId>com.bigdata</groupId> >> <artifactId>bigdata</artifactId> >> >> <version>1.5.3</version> >> </dependency> >> >> my old code generated the following error >> >> Exception in thread "main" java.lang.NoClassDefFoundError: >> org/eclipse/jetty/client/api/Request >> at com.blippar.action.AddAction.main(AddAction.java:182) >> Caused by: java.lang.ClassNotFoundException: >> org.eclipse.jetty.client.api.Request >> at java.net.URLClassLoader.findClass(URLClassLoader.java:381) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:424) >> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:357) >> ... 1 more >> >> >> >> ------------------------------------------------------------------------------ >> Go from Idea to Many App Stores Faster with Intel(R) XDK >> Give your users amazing mobile app experiences with Intel(R) XDK. >> Use one codebase in this all-in-one HTML5 development environment. >> Design, debug & build mobile apps & 2D/3D high-impact games for multiple >> OSs. >> http://pubads.g.doubleclick.net/gampad/clk?id=254741551&iu=/4140 >> _______________________________________________ >> Bigdata-developers mailing list >> Big...@li... >> https://lists.sourceforge.net/lists/listinfo/bigdata-developers >> >> > > > -- > _______________ > Brad Bebee > CEO, Managing Partner > SYSTAP, LLC > e: be...@sy... > m: 202.642.7961 > f: 571.367.5000 > w: www.blazegraph.com > > Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance > graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints > APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new > technology to use GPUs to accelerate data-parallel graph analytics. > > CONFIDENTIALITY NOTICE: This email and its contents and attachments are > for the sole use of the intended recipient(s) and are confidential or > proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, > dissemination or copying of this email or its contents or attachments is > prohibited. If you have received this communication in error, please notify > the sender by reply email and permanently delete all copies of the email > and its contents and attachments. > > > -- _______________ Brad Bebee CEO, Managing Partner SYSTAP, LLC e: be...@sy... m: 202.642.7961 f: 571.367.5000 w: www.blazegraph.com Blazegraph™ <http://www.blazegraph.com> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new technology to use GPUs to accelerate data-parallel graph analytics. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. |
|
From: Joakim S. <joa...@bl...> - 2015-11-30 18:53:26
|
Hi Brad, I added: <dependency> <groupId>org.eclipse.jetty</groupId> <artifactId>jetty-proxy</artifactId> <version>9.3.6.v20151106</version> </dependency> to my project and now it’s fine. Codehaus seems discontinued though /Joakim > On Nov 30, 2015, at 7:32 AM, Brad Bebee <be...@sy...> wrote: > > Joakim, > > Is this issue still occurring for you? > > Thanks, --Brad > > On Wed, Nov 25, 2015 at 1:55 PM, Joakim Soderberg <joa...@bl... <mailto:joa...@bl...>> wrote: > Hi > After migrating to Blazegraph 1.5.3., > > <dependency> > <groupId>com.bigdata</groupId> > <artifactId>bigdata</artifactId> > > <version>1.5.3</version> > </dependency> > > my old code generated the following error > > Exception in thread "main" java.lang.NoClassDefFoundError: org/eclipse/jetty/client/api/Request > at com.blippar.action.AddAction.main(AddAction.java:182) > Caused by: java.lang.ClassNotFoundException: org.eclipse.jetty.client.api.Request > at java.net.URLClassLoader.findClass(URLClassLoader.java:381) > at java.lang.ClassLoader.loadClass(ClassLoader.java:424) > at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331) > at java.lang.ClassLoader.loadClass(ClassLoader.java:357) > ... 1 more > > > ------------------------------------------------------------------------------ > Go from Idea to Many App Stores Faster with Intel(R) XDK > Give your users amazing mobile app experiences with Intel(R) XDK. > Use one codebase in this all-in-one HTML5 development environment. > Design, debug & build mobile apps & 2D/3D high-impact games for multiple OSs. > http://pubads.g.doubleclick.net/gampad/clk?id=254741551&iu=/4140 <http://pubads.g.doubleclick.net/gampad/clk?id=254741551&iu=/4140> > _______________________________________________ > Bigdata-developers mailing list > Big...@li... <mailto:Big...@li...> > https://lists.sourceforge.net/lists/listinfo/bigdata-developers <https://lists.sourceforge.net/lists/listinfo/bigdata-developers> > > > > > -- > _______________ > Brad Bebee > CEO, Managing Partner > SYSTAP, LLC > e: be...@sy... <mailto:be...@sy...> > m: 202.642.7961 > f: 571.367.5000 > w: www.blazegraph.com <http://www.blazegraph.com/> > > Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new technology to use GPUs to accelerate data-parallel graph analytics. > > CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. > > |
|
From: Brad B. <be...@sy...> - 2015-11-30 15:33:02
|
Joakim, Is this issue still occurring for you? Thanks, --Brad On Wed, Nov 25, 2015 at 1:55 PM, Joakim Soderberg < joa...@bl...> wrote: > Hi > After migrating to Blazegraph 1.5.3., > > <dependency> > <groupId>com.bigdata</groupId> > <artifactId>bigdata</artifactId> > > <version>1.5.3</version> > </dependency> > > my old code generated the following error > > Exception in thread "main" java.lang.NoClassDefFoundError: > org/eclipse/jetty/client/api/Request > at com.blippar.action.AddAction.main(AddAction.java:182) > Caused by: java.lang.ClassNotFoundException: > org.eclipse.jetty.client.api.Request > at java.net.URLClassLoader.findClass(URLClassLoader.java:381) > at java.lang.ClassLoader.loadClass(ClassLoader.java:424) > at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331) > at java.lang.ClassLoader.loadClass(ClassLoader.java:357) > ... 1 more > > > > ------------------------------------------------------------------------------ > Go from Idea to Many App Stores Faster with Intel(R) XDK > Give your users amazing mobile app experiences with Intel(R) XDK. > Use one codebase in this all-in-one HTML5 development environment. > Design, debug & build mobile apps & 2D/3D high-impact games for multiple > OSs. > http://pubads.g.doubleclick.net/gampad/clk?id=254741551&iu=/4140 > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > -- _______________ Brad Bebee CEO, Managing Partner SYSTAP, LLC e: be...@sy... m: 202.642.7961 f: 571.367.5000 w: www.blazegraph.com Blazegraph™ <http://www.blazegraph.com> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new technology to use GPUs to accelerate data-parallel graph analytics. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. |
|
From: Joakim S. <joa...@bl...> - 2015-11-25 18:55:33
|
Hi After migrating to Blazegraph 1.5.3., <dependency> <groupId>com.bigdata</groupId> <artifactId>bigdata</artifactId> <version>1.5.3</version> </dependency> my old code generated the following error Exception in thread "main" java.lang.NoClassDefFoundError: org/eclipse/jetty/client/api/Request at com.blippar.action.AddAction.main(AddAction.java:182) Caused by: java.lang.ClassNotFoundException: org.eclipse.jetty.client.api.Request at java.net.URLClassLoader.findClass(URLClassLoader.java:381) at java.lang.ClassLoader.loadClass(ClassLoader.java:424) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331) at java.lang.ClassLoader.loadClass(ClassLoader.java:357) ... 1 more |
|
From: Michael S. <ms...@me...> - 2015-11-24 07:34:12
|
Dear Reul, according to the standard, in RDF/SPARQL IRIs (a generalisation of URIs, which again generalize URLs) are considered case sensitive — which is, as you noticed, different from the way URLs are typically interpreted by Web servers or the interpretation of email addresses: See http://www.w3.org/TR/2014/REC-rdf11-concepts-20140225/ <http://www.w3.org/TR/2014/REC-rdf11-concepts-20140225/> "Two IRIs are equal if and only if they are equivalent under Simple String Comparison according to section 5.1 <http://tools.ietf.org/html/rfc3987#section-5.1> of [RFC3987 <http://www.w3.org/TR/2014/REC-rdf11-concepts-20140225/#bib-RFC3987>]”, where section 5.1 of the RFC essentially defines a character-by-character comparison of the IRIs. Best, Michael > On 24 Nov 2015, at 03:00, Reul, Quentin <que...@wo...> wrote: > > Hi all, > > I have a small questions about how the equivalence between 2 URIs are calculated in Blazegraph 1.5.2. I observed that difference in cases in URIs (e.g. use of lower case vs. capitals) had an impact on the calculation of equivalence. In a namespace, I had loaded information about a resource (i.e. <mailto:Que...@wo... <mailto:Que...@wo...>>) and this resource has a label to define the human readable name of the resource. Another applications was adding triples including this resource containing slightly different case (i.e. <mailto:que...@wo... <mailto:que...@wo...>>). Based on my experience with mail clients and browser, I would have assumed that Blazegraph would have considered the two variants as a single instance of the same reason. > > Is there something that I am missing? > > Kind regards, > > Quentin Reul > Advanced Technology | Global Platform Organization | +1 (917) 891 5490 > Email: Que...@wo... <mailto:Que...@wo...> > Skype: quentin_reul > > ------------------------------------------------------------------------------ > Go from Idea to Many App Stores Faster with Intel(R) XDK > Give your users amazing mobile app experiences with Intel(R) XDK. > Use one codebase in this all-in-one HTML5 development environment. > Design, debug & build mobile apps & 2D/3D high-impact games for multiple OSs. > http://pubads.g.doubleclick.net/gampad/clk?id=254741551&iu=/4140_______________________________________________ <http://pubads.g.doubleclick.net/gampad/clk?id=254741551&iu=/4140_______________________________________________> > Bigdata-developers mailing list > Big...@li... <mailto:Big...@li...> > https://lists.sourceforge.net/lists/listinfo/bigdata-developers <https://lists.sourceforge.net/lists/listinfo/bigdata-developers> |
|
From: Reul, Q. <que...@wo...> - 2015-11-24 02:15:13
|
Hi all, I have a small questions about how the equivalence between 2 URIs are calculated in Blazegraph 1.5.2. I observed that difference in cases in URIs (e.g. use of lower case vs. capitals) had an impact on the calculation of equivalence. In a namespace, I had loaded information about a resource (i.e. <mailto:Que...@wo...>) and this resource has a label to define the human readable name of the resource. Another applications was adding triples including this resource containing slightly different case (i.e. <mailto:que...@wo...>). Based on my experience with mail clients and browser, I would have assumed that Blazegraph would have considered the two variants as a single instance of the same reason. Is there something that I am missing? Kind regards, Quentin Reul Advanced Technology | Global Platform Organization | +1 (917) 891 5490 Email: Que...@wo...<mailto:Que...@wo...> Skype: quentin_reul |
|
From: Bryan T. <br...@sy...> - 2015-11-20 20:01:58
|
Hum. Perhaps a tight loop? Can you put a profiler on it and see where the time is? ---- Bryan Thompson Chief Scientist & Founder SYSTAP, LLC 4501 Tower Road Greensboro, NC 27410 br...@sy... http://blazegraph.com http://blog.blazegraph.com Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Blazegraph is now available with GPU acceleration using our disruptive technology to accelerate data-parallel graph analytics and graph query. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. On Fri, Nov 20, 2015 at 3:00 PM, Jeremy J Carroll <jj...@sy...> wrote: > The GC activity looks normal > > $ tail -f gc.txt.0.current > 2015-11-20T11:54:26.679-0800: 165074.286: [GC (Allocation Failure) > [PSYoungGen: 10972401K->27312K(11192832K)] 15072162K->4127073K(22849024K), > 0.0327707 secs] [Times: user=0.21 sys=0.00, real=0.03 secs] > 2015-11-20T11:54:34.087-0800: 165081.693: [GC (Allocation Failure) > [PSYoungGen: 11022000K->29680K(11201024K)] 15121761K->4129441K(22857216K), > 0.0393527 secs] [Times: user=0.25 sys=0.01, real=0.04 secs] > 2015-11-20T11:54:41.544-0800: 165089.150: [GC (Allocation Failure) > [PSYoungGen: 11024368K->32673K(11217408K)] 15124129K->4132434K(22873600K), > 0.0377333 secs] [Times: user=0.26 sys=0.01, real=0.04 secs] > 2015-11-20T11:54:49.104-0800: 165096.710: [GC (Allocation Failure) > [PSYoungGen: 11075489K->34353K(11225088K)] 15175250K->4134114K(22881280K), > 0.0329827 secs] [Times: user=0.24 sys=0.00, real=0.03 secs] > 2015-11-20T11:54:56.496-0800: 165104.102: [GC (Allocation Failure) > [PSYoungGen: 11077169K->38080K(11241984K)] 15176930K->4137841K(22898176K), > 0.0379682 secs] [Times: user=0.28 sys=0.00, real=0.04 secs] > 2015-11-20T11:55:04.088-0800: 165111.694: [GC (Allocation Failure) > [PSYoungGen: 11128000K->40626K(11249664K)] 15227761K->4140387K(22905856K), > 0.0394295 secs] [Times: user=0.24 sys=0.01, real=0.04 secs] > 2015-11-20T11:55:11.895-0800: 165119.502: [GC (Allocation Failure) > [PSYoungGen: 11130546K->42770K(11266048K)] 15230307K->4142531K(22922240K), > 0.0362157 secs] [Times: user=0.27 sys=0.00, real=0.04 secs] > 2015-11-20T11:55:19.572-0800: 165127.178: [GC (Allocation Failure) > [PSYoungGen: 11177234K->42851K(11273216K)] 15276995K->4145108K(22929408K), > 0.0377121 secs] [Times: user=0.29 sys=0.01, real=0.03 secs] > 2015-11-20T11:55:27.087-0800: 165134.694: [GC (Allocation Failure) > [PSYoungGen: 11177315K->42627K(11290112K)] 15279572K->4147371K(22946304K), > 0.0383873 secs] [Times: user=0.28 sys=0.01, real=0.04 secs] > 2015-11-20T11:55:34.844-0800: 165142.450: [GC (Allocation Failure) > [PSYoungGen: 11217539K->42784K(11296256K)] 15322283K->4150024K(22952448K), > 0.0383107 secs] [Times: user=0.32 sys=0.00, real=0.04 secs] > 2015-11-20T11:55:42.521-0800: 165150.128: [GC (Allocation Failure) > [PSYoungGen: 11217696K->44033K(11310080K)] 15324936K->4153778K(22966272K), > 0.0389080 secs] [Times: user=0.31 sys=0.00, real=0.04 secs] > 2015-11-20T11:55:50.160-0800: 165157.766: [GC (Allocation Failure) > [PSYoungGen: 11252225K->42833K(11315200K)] 15361970K->4155049K(22971392K), > 0.0511641 secs] [Times: user=0.31 sys=0.01, real=0.05 secs] > > Although top shows 780% CPU usage > > Wiki page is: > https://wiki.blazegraph.com/wiki/index.php/REST_API#STATUS > > > $ curl -k https://localhost:2443/bigdata/status?showQueries=details > <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" " > http://www.w3.org/TR/html4/loose.dtd"><html><head><meta > http-equiv="Content-Type" > content="text/html;charset=UTF-8"><title>blazegraph™ by > SYSTAP</title > ></head > ><body<p>Build Version=<span id="buildVersion">1.5.3-20151114-maint</span > ></p > ><p>Accepted query count=<span id="accepted-query-count">12723</span > ></p > ><p>Running query count=<span id="running-query-count">2</span > ></p > ><p>Show <a > href="https://localhost:2443/bigdata/status?showQueries" > id="show-queries">queries</a > >, <a > href="https://localhost:2443/bigdata/status?showQueries=details" > id="show-query-details">query details</a > >.</p > ><p id="counter-set"> > /blockedWorkQueueCount=17 > /blockedWorkQueueRunningTotal=34006865 > /deadlineQueueSize=0 > /operatorActiveCount=41 > /operatorHaltCount=217992594 > /operatorStartCount=217992635 > /operatorTasksPerQuery=5976.001809309721 > /queriesPerSecond=1.7439009838282562 > /queryDoneCount=36478 > /queryErrorCount=15 > /queryStartCount=36484</p > ></html > > > > is not very helpful ! > > My gut feel is that this is probably an explore click gone bad …. > > com.bigdata.rdf.sail.describeMode SCBD > com.bigdata.rdf.sail.describeIterationStatementLimit 1000 > com.bigdata.rdf.sail.describeIterationLimit 10 > > On Nov 20, 2015, at 11:50 AM, Bryan Thompson <br...@sy...> wrote: > > What is the current GC activity? If the server is in GC hell then it will > not be responsive. > > ---- > Bryan Thompson > Chief Scientist & Founder > SYSTAP, LLC > 4501 Tower Road > Greensboro, NC 27410 > br...@sy... > http://blazegraph.com > http://blog.blazegraph.com > > Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance > graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints > APIs. Blazegraph is now available with GPU acceleration using our disruptive > technology to accelerate data-parallel graph analytics and graph query. > > CONFIDENTIALITY NOTICE: This email and its contents and attachments are > for the sole use of the intended recipient(s) and are confidential or > proprietary to SYSTAP. Any unauthorized review, use, disclosure, > dissemination or copying of this email or its contents or attachments is > prohibited. If you have received this communication in error, please notify > the sender by reply email and permanently delete all copies of the email > and its contents and attachments. > > On Fri, Nov 20, 2015 at 2:20 PM, Jeremy J Carroll <jj...@sy...> wrote: > >> One of my deployments is under-performing, and I fear that I have a >> run-away query. >> >> I go to the status page, and see: >> >> >> Build Version=1.5.3-20151114-maint >> >> Accepted query count=12633 >> >> Running query count=2 >> >> Show queries <https://localhost:2443/bigdata/status?showQueries>, query >> details <https://localhost:2443/bigdata/status?showQueries=details>. >> /blockedWorkQueueCount=16 /blockedWorkQueueRunningTotal=33211984 >> /deadlineQueueSize=0 /operatorActiveCount=40 /operatorHaltCount=213105698 >> /operatorStartCount=213105738 /operatorTasksPerQuery=5860.348091519085 >> /queriesPerSecond=1.7561494448212958 /queryDoneCount=36364 >> /queryErrorCount=14 /queryStartCount=36370. >> >> >> >> When I click on either link, nothing happens. >> >> This happens fairly frequently, and is not a new issue. >> >> 1) Is this known about >> 2) Is there anything I can do to get a clearer picture of whats happening? >> >> >> >> >> >> ------------------------------------------------------------------------------ >> >> _______________________________________________ >> Bigdata-developers mailing list >> Big...@li... >> https://lists.sourceforge.net/lists/listinfo/bigdata-developers >> >> > > |
|
From: Jeremy J C. <jj...@sy...> - 2015-11-20 20:00:22
|
The GC activity looks normal $ tail -f gc.txt.0.current 2015-11-20T11:54:26.679-0800: 165074.286: [GC (Allocation Failure) [PSYoungGen: 10972401K->27312K(11192832K)] 15072162K->4127073K(22849024K), 0.0327707 secs] [Times: user=0.21 sys=0.00, real=0.03 secs] 2015-11-20T11:54:34.087-0800: 165081.693: [GC (Allocation Failure) [PSYoungGen: 11022000K->29680K(11201024K)] 15121761K->4129441K(22857216K), 0.0393527 secs] [Times: user=0.25 sys=0.01, real=0.04 secs] 2015-11-20T11:54:41.544-0800: 165089.150: [GC (Allocation Failure) [PSYoungGen: 11024368K->32673K(11217408K)] 15124129K->4132434K(22873600K), 0.0377333 secs] [Times: user=0.26 sys=0.01, real=0.04 secs] 2015-11-20T11:54:49.104-0800: 165096.710: [GC (Allocation Failure) [PSYoungGen: 11075489K->34353K(11225088K)] 15175250K->4134114K(22881280K), 0.0329827 secs] [Times: user=0.24 sys=0.00, real=0.03 secs] 2015-11-20T11:54:56.496-0800: 165104.102: [GC (Allocation Failure) [PSYoungGen: 11077169K->38080K(11241984K)] 15176930K->4137841K(22898176K), 0.0379682 secs] [Times: user=0.28 sys=0.00, real=0.04 secs] 2015-11-20T11:55:04.088-0800: 165111.694: [GC (Allocation Failure) [PSYoungGen: 11128000K->40626K(11249664K)] 15227761K->4140387K(22905856K), 0.0394295 secs] [Times: user=0.24 sys=0.01, real=0.04 secs] 2015-11-20T11:55:11.895-0800: 165119.502: [GC (Allocation Failure) [PSYoungGen: 11130546K->42770K(11266048K)] 15230307K->4142531K(22922240K), 0.0362157 secs] [Times: user=0.27 sys=0.00, real=0.04 secs] 2015-11-20T11:55:19.572-0800: 165127.178: [GC (Allocation Failure) [PSYoungGen: 11177234K->42851K(11273216K)] 15276995K->4145108K(22929408K), 0.0377121 secs] [Times: user=0.29 sys=0.01, real=0.03 secs] 2015-11-20T11:55:27.087-0800: 165134.694: [GC (Allocation Failure) [PSYoungGen: 11177315K->42627K(11290112K)] 15279572K->4147371K(22946304K), 0.0383873 secs] [Times: user=0.28 sys=0.01, real=0.04 secs] 2015-11-20T11:55:34.844-0800: 165142.450: [GC (Allocation Failure) [PSYoungGen: 11217539K->42784K(11296256K)] 15322283K->4150024K(22952448K), 0.0383107 secs] [Times: user=0.32 sys=0.00, real=0.04 secs] 2015-11-20T11:55:42.521-0800: 165150.128: [GC (Allocation Failure) [PSYoungGen: 11217696K->44033K(11310080K)] 15324936K->4153778K(22966272K), 0.0389080 secs] [Times: user=0.31 sys=0.00, real=0.04 secs] 2015-11-20T11:55:50.160-0800: 165157.766: [GC (Allocation Failure) [PSYoungGen: 11252225K->42833K(11315200K)] 15361970K->4155049K(22971392K), 0.0511641 secs] [Times: user=0.31 sys=0.01, real=0.05 secs] Although top shows 780% CPU usage Wiki page is: https://wiki.blazegraph.com/wiki/index.php/REST_API#STATUS <https://wiki.blazegraph.com/wiki/index.php/REST_API#STATUS> $ curl -k https://localhost:2443/bigdata/status?showQueries=details <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"><html><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"><title>blazegraph™ by SYSTAP</title ></head ><body<p>Build Version=<span id="buildVersion">1.5.3-20151114-maint</span ></p ><p>Accepted query count=<span id="accepted-query-count">12723</span ></p ><p>Running query count=<span id="running-query-count">2</span ></p ><p>Show <a href="https://localhost:2443/bigdata/status?showQueries" id="show-queries">queries</a >, <a href="https://localhost:2443/bigdata/status?showQueries=details" id="show-query-details">query details</a >.</p ><p id="counter-set"> /blockedWorkQueueCount=17 /blockedWorkQueueRunningTotal=34006865 /deadlineQueueSize=0 /operatorActiveCount=41 /operatorHaltCount=217992594 /operatorStartCount=217992635 /operatorTasksPerQuery=5976.001809309721 /queriesPerSecond=1.7439009838282562 /queryDoneCount=36478 /queryErrorCount=15 /queryStartCount=36484</p ></html > is not very helpful ! My gut feel is that this is probably an explore click gone bad …. com.bigdata.rdf.sail.describeMode SCBD com.bigdata.rdf.sail.describeIterationStatementLimit 1000 com.bigdata.rdf.sail.describeIterationLimit 10 > On Nov 20, 2015, at 11:50 AM, Bryan Thompson <br...@sy...> wrote: > > What is the current GC activity? If the server is in GC hell then it will not be responsive. > > ---- > Bryan Thompson > Chief Scientist & Founder > SYSTAP, LLC > 4501 Tower Road > Greensboro, NC 27410 > br...@sy... <mailto:br...@sy...> > http://blazegraph.com <http://blazegraph.com/> > http://blog.blazegraph.com <http://blog.blazegraph.com/> > > Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Blazegraph is now available with GPU acceleration using our disruptive technology to accelerate data-parallel graph analytics and graph query. > CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. > > > > On Fri, Nov 20, 2015 at 2:20 PM, Jeremy J Carroll <jj...@sy... <mailto:jj...@sy...>> wrote: > One of my deployments is under-performing, and I fear that I have a run-away query. > > I go to the status page, and see: > > > Build Version=1.5.3-20151114-maint > > Accepted query count=12633 > > Running query count=2 > > Show queries <https://localhost:2443/bigdata/status?showQueries>, query details <https://localhost:2443/bigdata/status?showQueries=details>. > > /blockedWorkQueueCount=16 /blockedWorkQueueRunningTotal=33211984 /deadlineQueueSize=0 /operatorActiveCount=40 /operatorHaltCount=213105698 /operatorStartCount=213105738 /operatorTasksPerQuery=5860.348091519085 /queriesPerSecond=1.7561494448212958 /queryDoneCount=36364 /queryErrorCount=14 /queryStartCount=36370. > > > When I click on either link, nothing happens. > > This happens fairly frequently, and is not a new issue. > > 1) Is this known about > 2) Is there anything I can do to get a clearer picture of whats happening? > > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > Bigdata-developers mailing list > Big...@li... <mailto:Big...@li...> > https://lists.sourceforge.net/lists/listinfo/bigdata-developers <https://lists.sourceforge.net/lists/listinfo/bigdata-developers> > > |
|
From: Bryan T. <br...@sy...> - 2015-11-20 19:50:39
|
What is the current GC activity? If the server is in GC hell then it will not be responsive. ---- Bryan Thompson Chief Scientist & Founder SYSTAP, LLC 4501 Tower Road Greensboro, NC 27410 br...@sy... http://blazegraph.com http://blog.blazegraph.com Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Blazegraph is now available with GPU acceleration using our disruptive technology to accelerate data-parallel graph analytics and graph query. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. On Fri, Nov 20, 2015 at 2:20 PM, Jeremy J Carroll <jj...@sy...> wrote: > One of my deployments is under-performing, and I fear that I have a > run-away query. > > I go to the status page, and see: > > > Build Version=1.5.3-20151114-maint > > Accepted query count=12633 > > Running query count=2 > > Show queries <https://localhost:2443/bigdata/status?showQueries>, query > details <https://localhost:2443/bigdata/status?showQueries=details>. > /blockedWorkQueueCount=16 /blockedWorkQueueRunningTotal=33211984 > /deadlineQueueSize=0 /operatorActiveCount=40 /operatorHaltCount=213105698 > /operatorStartCount=213105738 /operatorTasksPerQuery=5860.348091519085 > /queriesPerSecond=1.7561494448212958 /queryDoneCount=36364 > /queryErrorCount=14 /queryStartCount=36370. > > > > When I click on either link, nothing happens. > > This happens fairly frequently, and is not a new issue. > > 1) Is this known about > 2) Is there anything I can do to get a clearer picture of whats happening? > > > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > |
|
From: Bryan T. <br...@sy...> - 2015-11-20 19:49:48
|
Jeremy, That looks like a bug. Some things in the StatusServlet were broken for non-workbench purposes (not by intent) when the workbench was developed. What wiki page are you referring to? Bryan ---- Bryan Thompson Chief Scientist & Founder SYSTAP, LLC 4501 Tower Road Greensboro, NC 27410 br...@sy... http://blazegraph.com http://blog.blazegraph.com Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Blazegraph is now available with GPU acceleration using our disruptive technology to accelerate data-parallel graph analytics and graph query. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. On Fri, Nov 20, 2015 at 2:38 PM, Jeremy J Carroll <jj...@sy...> wrote: > I am wondering whether this is a defect: > > $ curl -k https://localhost:2443/bigdata/status?showQueries=details > <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" " > http://www.w3.org/TR/html4/loose.dtd"><html><head><meta > http-equiv="Content-Type" > content="text/html;charset=UTF-8"><title>blazegraph™ by > SYSTAP</title > ></head > ><body<p>Build Version=<span id="buildVersion">1.5.3-20151114-maint</span > ></p > ><p>Accepted query count=<span id="accepted-query-count">12671</span > ></p > ><p>Running query count=<span id="running-query-count">2</span > ></p > ><p>Show <a > href="https://localhost:2443/bigdata/status?showQueries" > id="show-queries">queries</a > >, <a > href="https://localhost:2443/bigdata/status?showQueries=details" > id="show-query-details">query details</a > >.</p > ><p id="counter-set"> > /blockedWorkQueueCount=18 > /blockedWorkQueueRunningTotal=33563512 > /deadlineQueueSize=0 > /operatorActiveCount=41 > /operatorHaltCount=215276564 > /operatorStartCount=215276605 > /operatorTasksPerQuery=5913.054192874996 > /queriesPerSecond=1.7505881013382163 > /queryDoneCount=36407 > /queryErrorCount=14 > /queryStartCount=36413</p > ></html > > > > Does not appear to conform with the definition of ?showQueries=details on > the wiki page > > Jeremy > > > > > On Nov 20, 2015, at 11:20 AM, Jeremy J Carroll <jj...@sy...> wrote: > > One of my deployments is under-performing, and I fear that I have a > run-away query. > > I go to the status page, and see: > > > Build Version=1.5.3-20151114-maint > > Accepted query count=12633 > > Running query count=2 > > Show queries <https://localhost:2443/bigdata/status?showQueries>, query > details <https://localhost:2443/bigdata/status?showQueries=details>. > /blockedWorkQueueCount=16 /blockedWorkQueueRunningTotal=33211984 > /deadlineQueueSize=0 /operatorActiveCount=40 /operatorHaltCount=213105698 > /operatorStartCount=213105738 /operatorTasksPerQuery=5860.348091519085 > /queriesPerSecond=1.7561494448212958 /queryDoneCount=36364 > /queryErrorCount=14 /queryStartCount=36370. > > > > When I click on either link, nothing happens. > > This happens fairly frequently, and is not a new issue. > > 1) Is this known about > 2) Is there anything I can do to get a clearer picture of whats happening? > > > > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > |
|
From: Jeremy J C. <jj...@sy...> - 2015-11-20 19:38:45
|
I am wondering whether this is a defect: $ curl -k https://localhost:2443/bigdata/status?showQueries=details <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"><html><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"><title>blazegraph™ by SYSTAP</title ></head ><body<p>Build Version=<span id="buildVersion">1.5.3-20151114-maint</span ></p ><p>Accepted query count=<span id="accepted-query-count">12671</span ></p ><p>Running query count=<span id="running-query-count">2</span ></p ><p>Show <a href="https://localhost:2443/bigdata/status?showQueries" id="show-queries">queries</a >, <a href="https://localhost:2443/bigdata/status?showQueries=details" id="show-query-details">query details</a >.</p ><p id="counter-set"> /blockedWorkQueueCount=18 /blockedWorkQueueRunningTotal=33563512 /deadlineQueueSize=0 /operatorActiveCount=41 /operatorHaltCount=215276564 /operatorStartCount=215276605 /operatorTasksPerQuery=5913.054192874996 /queriesPerSecond=1.7505881013382163 /queryDoneCount=36407 /queryErrorCount=14 /queryStartCount=36413</p ></html > Does not appear to conform with the definition of ?showQueries=details on the wiki page Jeremy > On Nov 20, 2015, at 11:20 AM, Jeremy J Carroll <jj...@sy...> wrote: > > One of my deployments is under-performing, and I fear that I have a run-away query. > > I go to the status page, and see: > > > Build Version=1.5.3-20151114-maint > > Accepted query count=12633 > > Running query count=2 > > Show queries <https://localhost:2443/bigdata/status?showQueries>, query details <https://localhost:2443/bigdata/status?showQueries=details>. > > /blockedWorkQueueCount=16 /blockedWorkQueueRunningTotal=33211984 /deadlineQueueSize=0 /operatorActiveCount=40 /operatorHaltCount=213105698 /operatorStartCount=213105738 /operatorTasksPerQuery=5860.348091519085 /queriesPerSecond=1.7561494448212958 /queryDoneCount=36364 /queryErrorCount=14 /queryStartCount=36370. > > > When I click on either link, nothing happens. > > This happens fairly frequently, and is not a new issue. > > 1) Is this known about > 2) Is there anything I can do to get a clearer picture of whats happening? > > > |
|
From: Jeremy J C. <jj...@sy...> - 2015-11-20 19:20:44
|
One of my deployments is under-performing, and I fear that I have a run-away query. I go to the status page, and see: Build Version=1.5.3-20151114-maint Accepted query count=12633 Running query count=2 Show queries <https://localhost:2443/bigdata/status?showQueries>, query details <https://localhost:2443/bigdata/status?showQueries=details>. /blockedWorkQueueCount=16 /blockedWorkQueueRunningTotal=33211984 /deadlineQueueSize=0 /operatorActiveCount=40 /operatorHaltCount=213105698 /operatorStartCount=213105738 /operatorTasksPerQuery=5860.348091519085 /queriesPerSecond=1.7561494448212958 /queryDoneCount=36364 /queryErrorCount=14 /queryStartCount=36370. When I click on either link, nothing happens. This happens fairly frequently, and is not a new issue. 1) Is this known about 2) Is there anything I can do to get a clearer picture of whats happening? |
|
From: Brad B. <be...@sy...> - 2015-11-18 22:51:21
|
Joakim, This may well be a classpath error as well. Sesame has some tricky nuances about repacking the parsers. Please try including the bigdata-bundled.jar in your WEB-INF/lib and see if it resolves the error. You can then work backwards to identify the offending issue and just pull what you need into your web application. Thanks, --Brad On Wed, Nov 18, 2015 at 1:34 PM, Joakim Soderberg < joa...@bl...> wrote: > Digging further into the problem, from localhost.2015-11-18.log, it seems > that: > > > org.openrdf.query.resultio.TupleQueryResultParserRegistry.getKey(TupleQueryResultParserRegistry.java:52) > fails. > > 18-Nov-2015 17:41:08.522 INFO [localhost-startStop-1] > org.apache.catalina.core.ApplicationContext.log ContextListener: > contextInitialized() > 18-Nov-2015 17:41:08.522 INFO [localhost-startStop-1] > org.apache.catalina.core.ApplicationContext.log SessionListener: > contextInitialized() > 18-Nov-2015 17:41:29.021 SEVERE [http-nio-8080-exec-8] > org.apache.catalina.core.ApplicationContext.log StandardWrapper.Throwable > java.lang.ExceptionInInitializerError > at > com.bigdata.rdf.store.AbstractTripleStore.<init>(AbstractTripleStore.java:1355) > at > com.bigdata.rdf.store.AbstractLocalTripleStore.<init>(AbstractLocalTripleStore.java:57) > at > com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:179) > at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:833) > at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:718) > at com.bigdata.rdf.sail.BigdataSail.<init>(BigdataSail.java:695) > at com.blippar.servlet.DataManager.initialize(DataManager.java:79) > at com.blippar.servlet.MinervaServlet.init(MinervaServlet.java:39) > at javax.servlet.GenericServlet.init(GenericServlet.java:158) > at > org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1231) > at > org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1144) > at > org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:817) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:135) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106) > at > org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79) > at > org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518) > at > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091) > at > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:673) > at > org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1500) > at > org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1456) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at > org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) > at java.lang.Thread.run(Thread.java:745) > Caused by: java.lang.NullPointerException > at > org.openrdf.query.resultio.TupleQueryResultParserRegistry.getKey(TupleQueryResultParserRegistry.java:52) > at > org.openrdf.query.resultio.TupleQueryResultParserRegistry.getKey(TupleQueryResultParserRegistry.java:27) > at > info.aduna.lang.service.ServiceRegistry.add(ServiceRegistry.java:84) > at > com.bigdata.rdf.ServiceProviderHook.forceLoad(ServiceProviderHook.java:258) > at > com.bigdata.rdf.ServiceProviderHook.<clinit>(ServiceProviderHook.java:125) > ... 28 more > > 18-Nov-2015 17:41:29.022 SEVERE [http-nio-8080-exec-8] > org.apache.catalina.core.StandardWrapperValve.invoke Allocate exception for > servlet com.blippar.servlet.MinervaServlet > java.lang.NullPointerException > at > org.openrdf.query.resultio.TupleQueryResultParserRegistry.getKey(TupleQueryResultParserRegistry.java:52) > at > org.openrdf.query.resultio.TupleQueryResultParserRegistry.getKey(TupleQueryResultParserRegistry.java:27) > at > info.aduna.lang.service.ServiceRegistry.add(ServiceRegistry.java:84) > at > com.bigdata.rdf.ServiceProviderHook.forceLoad(ServiceProviderHook.java:258) > at > com.bigdata.rdf.ServiceProviderHook.<clinit>(ServiceProviderHook.java:125) > at > com.bigdata.rdf.store.AbstractTripleStore.<init>(AbstractTripleStore.java:1355) > at > com.bigdata.rdf.store.AbstractLocalTripleStore.<init>(AbstractLocalTripleStore.java:57) > at > com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:179) > at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:833) > at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:718) > at com.bigdata.rdf.sail.BigdataSail.<init>(BigdataSail.java:695) > at com.blippar.servlet.DataManager.initialize(DataManager.java:79) > at com.blippar.servlet.MinervaServlet.init(MinervaServlet.java:39) > at javax.servlet.GenericServlet.init(GenericServlet.java:158) > at > org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1231) > at > org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1144) > at > org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:817) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:135) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106) > at > org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79) > at > org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518) > at > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091) > at > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:673) > at > org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1500) > at > org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1456) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at > org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) > at java.lang.Thread.run(Thread.java:745) > > 18-Nov-2015 17:41:29.058 SEVERE [http-nio-8080-exec-9] > org.apache.catalina.core.ApplicationContext.log StandardWrapper.Throwable > java.lang.NoClassDefFoundError: Could not initialize class > com.bigdata.rdf.ServiceProviderHook > at > com.bigdata.rdf.store.AbstractTripleStore.<init>(AbstractTripleStore.java:1355) > at > com.bigdata.rdf.store.AbstractLocalTripleStore.<init>(AbstractLocalTripleStore.java:57) > at > com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:179) > at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:833) > at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:718) > at com.bigdata.rdf.sail.BigdataSail.<init>(BigdataSail.java:695) > at com.blippar.servlet.DataManager.initialize(DataManager.java:79) > at com.blippar.servlet.MinervaServlet.init(MinervaServlet.java:39) > at javax.servlet.GenericServlet.init(GenericServlet.java:158) > at > org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1231) > at > org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1144) > -UU-:%%--F1 localhost.2015-11-18.log Top L1 (Fundamental) > ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- > Beginning of buffer > > > > On Nov 18, 2015, at 7:58 AM, Brad Bebee <be...@sy...> wrote: > > Joakim, > > 1.5.3 is available on our hosted-maven repository [1]. For 2.0, we'll be > releasing on maven central under com.blazegraph. Regarding your error, it > looks like you are starting the embedded Sail with the same properties used > for the NanoSparqlServer. Should that be a SailRepositoryConnection to > get a connection to the NSS endpoint? > > Thanks, --Brad > > [1] > http://www.systap.com/maven/releases/com/bigdata/bigdata/1.5.3/bigdata-1.5.3.pom > > On Wed, Nov 18, 2015 at 10:41 AM, Joakim Soderberg < > joa...@bl...> wrote: > >> I have been running Blazegraph 1.5.2 in embedded mode >> (apache-tomcat-8.0.27) for a few months ( Ill upgrade to 1.5.3 when >> available on Maven). >> After moving Tomcat to another volume with a minor update >> (apache-tomcat-8.0.27) I can no longer run my service. >> >> The servlet initializes twice. The first time Blazegraph engine starts, >> but it seems that at the end of its loading process, it fires an new init() >> to the servlet >> >> >> (2015-11-18 07:25:37,697) INFO : DataManager.java:62: Default >> configuration loaded: {serverPathTojnl=/mydata/blazegraph/} >> >> (2015-11-18 07:25:37,699) INFO : DataManager.java:78: Blazegraph >> configuration loaded: >> {com.bigdata.namespace.kb.spo.com.bigdata.btree.BTree.branchingFactor=1024, >> com.bigdata.journal.AbstractJournal.bufferMode=DiskRW, >> com.bigdata.journal.AbstractJournal.file=/mydata/blazegraph/dbpedia2015.jnl, >> com.bigdata.journal.AbstractJournal.initialExtent=209715200, >> com.bigdata.rdf.store.AbstractTripleStore.textIndex=true , >> com.bigdata.btree.BTree.branchingFactor=512, >> com.bigdata.namespace.kb.lex.com.bigdata.btree.BTree.branchingFactor=400, >> com.bigdata.rdf.store.AbstractTripleStore.axiomsClass=com.bigdata.rdf.axioms.NoAxioms, >> com.bigdata.rdf.sail.bufferCapacity=100000, >> com.bigdata.service.AbstractTransactionService.minReleaseAge=1, >> com.bigdata.rdf.sail.truthMaintenance=false , >> com.bigdata.journal.AbstractJournal.maximumExtent=209715200, >> com.bigdata.rdf.store.AbstractTripleStore.justify=false, >> com.bigdata.namespace.kb.spo.OSP.com.bigdata.btree.BTree.branchingFactor=512, >> com.bigdata.rdf.store.AbstractTripleStore.quads=false, >> com.bigdata.namespace.kb.spo.POS.com.bigdata.btree.BTree.branchingFactor=512, >> com.bigdata.rdf.rio.RDFParserOptions.datatypeHandling=IGNORE, >> com.bigdata.btree.writeRetentionQueue.capacity=8000, >> com.bigdata.rdf.rio.RDFParserOptions.verifyData=false, >> com.bigdata.rdf.store.DataLoader.commit=Incremental, >> com.bigdata.rdf.rio.RDFParserOptions.stopAtFirstError=false, >> com.bigdata.rdf.rio.RDFParserOptions.preserveBNodeIDs=false, >> com.bigdata.namespace.kb.spo.SPO.com.bigdata.btree.BTree.branchingFactor=512, >> com.bigdata.rdf.store.AbstractTripleStore.statementIdentifiers=false} >> >> (2015-11-18 07:25:37,744) INFO : SystemUtil.java:90: architecture: amd64 >> (2015-11-18 07:25:37,744) INFO : SystemUtil.java:91: operating system: >> Linux >> (2015-11-18 07:25:37,745) INFO : SystemUtil.java:92: operation system >> version: 3.10.0-229.20.1.el7.x86_64 >> (2015-11-18 07:25:37,745) INFO : SystemUtil.java:93: #processors: 8 >> (2015-11-18 07:25:37,745) INFO : SystemUtil.java:94: cpu info: Intel(R) >> Xeon(R) CPU E5-2670 v2 @ 2.50GHz Family 6 Model 62 Stepping 4, GenuineIntel >> >> BlazeGraph(TM) Graph Engine >> >> Flexible >> Reliable >> Affordable >> Web-Scale Computing for the Enterprise >> >> Copyright SYSTAP, LLC 2006-2015. All rights reserved. >> >> ip-172-31-11-213.us-west-2.compute.internal >> Wed Nov 18 07:25:37 UTC 2015 >> Linux/3.10.0-229.20.1.el7.x86_64 amd64 >> Intel(R) Xeon(R) CPU E5-2670 v2 @ 2.50GHz Family 6 Model 62 Stepping 4, >> GenuineIntel #CPU=8 >> Oracle Corporation 1.8.0_45 >> freeMemory=1446459088 >> buildVersion=1.5.2-SNAPSHOT >> >> Dependency License >> >> ICU >> http://source.icu-project.org/repos/icu/icu/trunk/license.html >> bigdata-ganglia http://www.apache.org/licenses/LICENSE-2.0.html >> >> blueprints-core >> https://github.com/tinkerpop/blueprints/blob/master/LICENSE.txt >> colt http://acs.lbl.gov/software/colt/license.html >> >> commons-codec http://www.apache.org/licenses/LICENSE-2.0.html >> >> commons-fileupload http://www.apache.org/licenses/LICENSE-2.0.html >> >> commons-io http://www.apache.org/licenses/LICENSE-2.0.html >> >> commons-logging http://www.apache.org/licenses/LICENSE-2.0.html >> >> dsiutils http://www.gnu.org/licenses/lgpl-2.1.html >> >> fastutil http://www.apache.org/licenses/LICENSE-2.0.html >> >> flot http://www.opensource.org/licenses/mit-license.php >> >> high-scale-lib http://creativecommons.org/licenses/publicdomain >> >> httpclient http://www.apache.org/licenses/LICENSE-2.0.html >> >> httpclient-cache http://www.apache.org/licenses/LICENSE-2.0.html >> >> httpcore http://www.apache.org/licenses/LICENSE-2.0.html >> >> httpmime http://www.apache.org/licenses/LICENSE-2.0.html >> >> jackson-core http://www.apache.org/licenses/LICENSE-2.0.html >> >> jetty http://www.apache.org/licenses/LICENSE-2.0.html >> >> jquery >> https://github.com/jquery/jquery/blob/master/MIT-LICENSE.txt >> log4j http://www.apache.org/licenses/LICENSE-2.0.html >> >> lucene http://www.apache.org/licenses/LICENSE-2.0.html >> >> nanohttp http://elonen.iki.fi/code/nanohttpd/#license >> >> rexster-core >> https://github.com/tinkerpop/rexster/blob/master/LICENSE.txt >> river http://www.apache.org/licenses/LICENSE-2.0.html >> >> servlet-api http://www.apache.org/licenses/LICENSE-2.0.html >> >> sesame http://www.openrdf.org/download.jsp >> >> slf4j http://www.slf4j.org/license.html >> >> zookeeper http://www.apache.org/licenses/LICENSE-2.0.html >> >> >> INFO: com.bigdata.util.config.LogUtil: Configure: >> file:/myserver/opt/apache-tomcat-8.0.27/webapps/dbpedia/WEB-INF/classes/log4j.properties >> (2015-11-18 07:25:37,754) DEBUG: AbstractDynamicMBean.java:148: >> preRegister called. Server=com.sun.jmx.mbeanserver.JmxMBeanServer@16b3fc9e, >> name=log4j:hierarchy=default >> (2015-11-18 07:25:37,754) DEBUG: HierarchyDynamicMBean.java:260: >> postRegister is called. >> (2015-11-18 07:25:38,078) WARN : ServiceProviderHook.java:172: Running. >> (2015-11-18 07:25:38,087) DEBUG: ServiceRegistry.java:61: Registered >> service class org.openrdf.rio.turtle.TurtleParserFactory >> (2015-11-18 07:25:38,088) DEBUG: ServiceRegistry.java:61: Registered >> service class org.openrdf.rio.ntriples.NTriplesParserFactory >> (2015-11-18 07:25:38,089) DEBUG: ServiceRegistry.java:61: Registered >> service class org.openrdf.rio.n3.N3ParserFactory >> (2015-11-18 07:25:38,089) DEBUG: ServiceRegistry.java:61: Registered >> service class org.openrdf.rio.nquads.NQuadsParserFactory >> (2015-11-18 07:25:38,090) DEBUG: ServiceRegistry.java:61: Registered >> service class org.openrdf.rio.binary.BinaryRDFParserFactory >> (2015-11-18 07:25:38,091) DEBUG: ServiceRegistry.java:61: Registered >> service class com.bigdata.rdf.rio.ntriples.BigdataNTriplesParserFactory >> (2015-11-18 07:25:38,091) DEBUG: ServiceRegistry.java:61: Registered >> service class com.bigdata.rdf.rio.turtle.BigdataTurtleParserFactory >> (2015-11-18 07:25:38,092) DEBUG: ServiceRegistry.java:61: Registered >> service class >> com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONParserForConstructFactory >> (2015-11-18 07:25:38,092) DEBUG: ServiceRegistry.java:61: Registered >> service class org.openrdf.rio.rdfxml.RDFXMLParserFactory >> (2015-11-18 07:25:38,093) DEBUG: ServiceRegistry.java:61: Registered >> service class org.openrdf.rio.rdfjson.RDFJSONParserFactory >> (2015-11-18 07:25:38,096) DEBUG: ServiceRegistry.java:61: Registered >> service class org.openrdf.rio.trig.TriGParserFactory >> (2015-11-18 07:25:38,097) DEBUG: ServiceRegistry.java:61: Registered >> service class org.openrdf.rio.trix.TriXParserFactory >> (2015-11-18 07:25:38,104) DEBUG: ServiceRegistry.java:61: Registered >> service class >> org.openrdf.query.resultio.binary.BinaryQueryResultWriterFactory >> (2015-11-18 07:25:38,104) DEBUG: ServiceRegistry.java:61: Registered >> service class com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONWriterFactory >> (2015-11-18 07:25:38,105) DEBUG: ServiceRegistry.java:61: Registered >> service class >> org.openrdf.query.resultio.text.csv.SPARQLResultsCSVWriterFactory >> (2015-11-18 07:25:38,105) DEBUG: ServiceRegistry.java:61: Registered >> service class >> org.openrdf.query.resultio.text.tsv.SPARQLResultsTSVWriterFactory >> (2015-11-18 07:25:38,106) DEBUG: ServiceRegistry.java:61: Registered >> service class >> org.openrdf.query.resultio.sparqlxml.SPARQLResultsXMLWriterFactory >> (2015-11-18 07:25:38,109) WARN : ServiceRegistry.java:57: New service >> class org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONWriterFactory >> replaces existing service class >> com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONWriterFactory >> (2015-11-18 07:25:38,109) DEBUG: ServiceRegistry.java:61: Registered >> service class >> org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONWriterFactory >> (2015-11-18 07:25:38,114) DEBUG: ServiceRegistry.java:61: Registered >> service class >> org.openrdf.query.resultio.binary.BinaryQueryResultParserFactory >> (2015-11-18 07:25:38,115) DEBUG: ServiceRegistry.java:61: Registered >> service class com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONParserFactory >> (2015-11-18 07:25:38,115) DEBUG: ServiceRegistry.java:61: Registered >> service class >> org.openrdf.query.resultio.text.csv.SPARQLResultsCSVParserFactory >> (2015-11-18 07:25:38,116) DEBUG: ServiceRegistry.java:61: Registered >> service class >> org.openrdf.query.resultio.text.tsv.SPARQLResultsTSVParserFactory >> (2015-11-18 07:25:38,116) DEBUG: ServiceRegistry.java:61: Registered >> service class >> org.openrdf.query.resultio.sparqlxml.SPARQLResultsXMLParserFactory >> (2015-11-18 07:25:38,119) WARN : ServiceRegistry.java:57: New service >> class org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONParserFactory >> replaces existing service class >> com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONParserFactory >> (2015-11-18 07:25:38,119) DEBUG: ServiceRegistry.java:61: Registered >> service class >> org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONParserFactory >> *realPath: /myserver/opt/apache-tomcat-8.0.27/webapps/dbpedia/ <== here >> it has restarted init()* >> log4j:WARN No appenders could be found for logger >> (org.apache.log4j.jmx.HierarchyDynamicMBean). *<== what is this? >> zookeeper?* >> log4j:WARN Please initialize the log4j system properly. >> log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for >> more info. >> (2015-11-18 07:25:38,126) DEBUG: PropertyConfigurator.java:770: >> addAppenderEvent called: logger=root, appender=devDest >> (2015-11-18 07:25:38,126) DEBUG: PropertyConfigurator.java:770: sending >> notification. >> (2015-11-18 07:25:38,127) DEBUG: PropertyConfigurator.java:759: >> removeAppenderCalled: logger=com.bigdata.relation.rule.eval.RuleLog, >> appender=ruleLog >> (2015-11-18 07:25:38,128) DEBUG: PropertyConfigurator.java:770: >> addAppenderEvent called: logger=com.bigdata.relation.rule.eval.RuleLog, >> appender=ruleLog >> (2015-11-18 07:25:38,128) DEBUG: PropertyConfigurator.java:770: sending >> notification. >> (2015-11-18 07:25:38,128) INFO : DataManager.java:62: Default >> configuration loaded: {serverPathTojnl=/mydata/blazegraph/} >> (2015-11-18 07:25:38,129) INFO : DataManager.java:78: Blazegraph >> configuration loaded: >> {com.bigdata.namespace.kb.spo.com.bigdata.btree.BTree.branchingFactor=1024, >> com.bigdata.journal.AbstractJournal.bufferMode=DiskRW, >> com.bigdata.journal.AbstractJournal.file=/mydata/blazegraph/dbpedia2015.jnl, >> com.bigdata.journal.AbstractJournal.initialExtent=209715200, >> com.bigdata.rdf.store.AbstractTripleStore.textIndex=true , >> com.bigdata.btree.BTree.branchingFactor=512, >> com.bigdata.namespace.kb.lex.com.bigdata.btree.BTree.branchingFactor=400, >> com.bigdata.rdf.store.AbstractTripleStore.axiomsClass=com.bigdata.rdf.axioms.NoAxioms, >> com.bigdata.rdf.sail.bufferCapacity=100000, >> com.bigdata.service.AbstractTransactionService.minReleaseAge=1, >> com.bigdata.rdf.sail.truthMaintenance=false , >> com.bigdata.journal.AbstractJournal.maximumExtent=209715200, >> com.bigdata.rdf.store.AbstractTripleStore.justify=false, >> com.bigdata.namespace.kb.spo.OSP.com.bigdata.btree.BTree.branchingFactor=512, >> com.bigdata.rdf.store.AbstractTripleStore.quads=false, >> com.bigdata.namespace.kb.spo.POS.com.bigdata.btree.BTree.branchingFactor=512, >> com.bigdata.rdf.rio.RDFParserOptions.datatypeHandling=IGNORE, >> com.bigdata.btree.writeRetentionQueue.capacity=8000, >> com.bigdata.rdf.rio.RDFParserOptions.verifyData=false, >> com.bigdata.rdf.store.DataLoader.commit=Incremental, >> com.bigdata.rdf.rio.RDFParserOptions.stopAtFirstError=false, >> com.bigdata.rdf.rio.RDFParserOptions.preserveBNodeIDs=false, >> com.bigdata.namespace.kb.spo.SPO.com.bigdata.btree.BTree.branchingFactor=512, >> com.bigdata.rdf.store.AbstractTripleStore.statementIdentifiers=false} *<= >> it loads the blazegrpah properties again* >> >> *the line far this is* >> sail = new BigdataSail(blazegraphsProps); which hangs >> >> >> >> ------------------------------------------------------------------------------ >> >> _______________________________________________ >> Bigdata-developers mailing list >> Big...@li... >> https://lists.sourceforge.net/lists/listinfo/bigdata-developers >> >> > > > -- > _______________ > Brad Bebee > CEO, Managing Partner > SYSTAP, LLC > e: be...@sy... > m: 202.642.7961 > f: 571.367.5000 > w: www.blazegraph.com > > Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance > graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints > APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new > technology to use GPUs to accelerate data-parallel graph analytics. > > CONFIDENTIALITY NOTICE: This email and its contents and attachments are > for the sole use of the intended recipient(s) and are confidential or > proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, > dissemination or copying of this email or its contents or attachments is > prohibited. If you have received this communication in error, please notify > the sender by reply email and permanently delete all copies of the email > and its contents and attachments. > > > -- _______________ Brad Bebee CEO, Managing Partner SYSTAP, LLC e: be...@sy... m: 202.642.7961 f: 571.367.5000 w: www.blazegraph.com Blazegraph™ <http://www.blazegraph.com> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new technology to use GPUs to accelerate data-parallel graph analytics. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. |
|
From: Brad B. <be...@sy...> - 2015-11-18 22:49:28
|
Joakim, This one is a classpath issue with the it.unimi.dsi jars not in the classpath. Can you verify that all of the jars from the bigdata.war/WEB-INF/lib are in your web application? You could also brute-force it by including the bigdata-bundled.jar in your lib. Thanks, --Brad On Wed, Nov 18, 2015 at 5:37 PM, Joakim Soderberg < joa...@bl...> wrote: > Moved over to ubuntu, Java 8, another error, same location. new > BigdataSail() > > > BlazeGraph(TM) Graph Engine > > Flexible > Reliable > Affordable > Web-Scale Computing for the Enterprise > > Copyright SYSTAP, LLC 2006-2015. All rights reserved. > > ip-172-31-1-211.us-west-2.compute.internal > Wed Nov 18 22:30:20 UTC 2015 > Linux/3.13.0-48-generic amd64 > Intel(R) Xeon(R) CPU E5-2670 v2 @ 2.50GHz Family 6 Model 62 Stepping 4, > GenuineIntel #CPU=8 > Oracle Corporation 1.8.0_66 > freeMemory=781155216 > buildVersion=1.5.2-SNAPSHOT > > Dependency License > > ICU > http://source.icu-project.org/repos/icu/icu/trunk/license.html > bigdata-ganglia http://www.apache.org/licenses/LICENSE-2.0.html > > blueprints-core > https://github.com/tinkerpop/blueprints/blob/master/LICENSE.txt > colt http://acs.lbl.gov/software/colt/license.html > > commons-codec http://www.apache.org/licenses/LICENSE-2.0.html > > commons-fileupload http://www.apache.org/licenses/LICENSE-2.0.html > > commons-io http://www.apache.org/licenses/LICENSE-2.0.html > > commons-logging http://www.apache.org/licenses/LICENSE-2.0.html > > dsiutils http://www.gnu.org/licenses/lgpl-2.1.html > > fastutil http://www.apache.org/licenses/LICENSE-2.0.html > > flot http://www.opensource.org/licenses/mit-license.php > > high-scale-lib http://creativecommons.org/licenses/publicdomain > > httpclient http://www.apache.org/licenses/LICENSE-2.0.html > > httpclient-cache http://www.apache.org/licenses/LICENSE-2.0.html > > httpcore http://www.apache.org/licenses/LICENSE-2.0.html > > httpmime http://www.apache.org/licenses/LICENSE-2.0.html > > jackson-core http://www.apache.org/licenses/LICENSE-2.0.html > > jetty http://www.apache.org/licenses/LICENSE-2.0.html > > jquery > https://github.com/jquery/jquery/blob/master/MIT-LICENSE.txt > log4j http://www.apache.org/licenses/LICENSE-2.0.html > > lucene http://www.apache.org/licenses/LICENSE-2.0.html > > nanohttp http://elonen.iki.fi/code/nanohttpd/#license > > rexster-core > https://github.com/tinkerpop/rexster/blob/master/LICENSE.txt > river http://www.apache.org/licenses/LICENSE-2.0.html > > servlet-api http://www.apache.org/licenses/LICENSE-2.0.html > > sesame http://www.openrdf.org/download.jsp > > slf4j http://www.slf4j.org/license.html > > zookeeper http://www.apache.org/licenses/LICENSE-2.0.html > > > INFO: com.bigdata.util.config.LogUtil: Configure: > file:/opt/tomcat/webapps/dbpedia/WEB-INF/classes/log4j.properties > (2015-11-18 22:30:20,226) DEBUG: AbstractDynamicMBean.java:148: > preRegister called. Server=com.sun.jmx.mbeanserver.JmxMBeanServer@e2d56bf, > name=log4j:hierarchy=default > (2015-11-18 22:30:20,227) DEBUG: HierarchyDynamicMBean.java:260: > postRegister is called. > java.lang.NoSuchMethodError: it.unimi.dsi.io.InputBitStream.<init>([BII)V > at > com.bigdata.io.AbstractFixedByteArrayBuffer.getInputBitStream(AbstractFixedByteArrayBuffer.java:415) > at > com.bigdata.btree.raba.codec.CanonicalHuffmanRabaCoder$CodedRabaImpl.<init>(CanonicalHuffmanRabaCoder.java:1514) > at > com.bigdata.btree.raba.codec.CanonicalHuffmanRabaCoder.encodeLive(CanonicalHuffmanRabaCoder.java:1331) > at > com.bigdata.btree.data.DefaultLeafCoder.encodeLive(DefaultLeafCoder.java:234) > at > com.bigdata.btree.data.DefaultLeafCoder.encodeLive(DefaultLeafCoder.java:54) > at com.bigdata.btree.NodeSerializer.encodeLive(NodeSerializer.java:440) > at com.bigdata.btree.AbstractBTree.writeNodeOrLeaf(AbstractBTree.java:3853) > at > com.bigdata.btree.AbstractBTree.writeNodeRecursive(AbstractBTree.java:3678) > at com.bigdata.btree.BTree.flush(BTree.java:756) > at com.bigdata.btree.BTree._writeCheckpoint2(BTree.java:961) > at com.bigdata.btree.BTree.writeCheckpoint2(BTree.java:922) > at com.bigdata.btree.BTree.writeCheckpoint(BTree.java:862) > at com.bigdata.journal.Name2Addr.registerIndex(Name2Addr.java:1061) > at com.bigdata.journal.AbstractJournal._register(AbstractJournal.java:5711) > at > com.bigdata.journal.AbstractJournal.registerIndex(AbstractJournal.java:5604) > at > com.bigdata.sparse.GlobalRowStoreHelper.getGlobalRowStore(GlobalRowStoreHelper.java:149) > at com.bigdata.journal.Journal.getGlobalRowStore(Journal.java:3746) > at > com.bigdata.relation.locator.DefaultResourceLocator.locateResourceOn(DefaultResourceLocator.java:823) > at > com.bigdata.relation.locator.DefaultResourceLocator.locateResource(DefaultResourceLocator.java:562) > at > com.bigdata.relation.locator.DefaultResourceLocator.cacheMiss(DefaultResourceLocator.java:383) > at > com.bigdata.relation.locator.DefaultResourceLocator.locate(DefaultResourceLocator.java:335) > at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:774) > at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:712) > at com.bigdata.rdf.sail.BigdataSail.<init>(BigdataSail.java:689) > at com.blippar.servlet.DataManager.initialize(DataManager.java:70) > at com.blippar.servlet.MinervaServlet.init(MinervaServlet.java:39) > at javax.servlet.GenericServlet.init(GenericServlet.java:158) > at > org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1231) > at > org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1144) > at > org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:817) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:135) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106) > at > org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79) > at > org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518) > at > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091) > at > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:673) > at > org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1500) > at > org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1456) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at > org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) > at java.lang.Thread.run(Thread.java:745) > (2015-11-18 22:30:20,510) INFO : MinervaServlet.java:42: initialized? false > (2015-11-18 22:30:20,511) INFO : MinervaServlet.java:72: Query:action=info > (2015-11-18 22:30:20,511) INFO : MinervaServlet.java:72: Query:action=info > (2015-11-18 22:30:20,512) DEBUG: MinervaServlet.java:73: XML: > (2015-11-18 22:30:20,511) DEBUG: MinervaServlet.java:73: XML: > (2015-11-18 22:30:20,515) INFO : BaseAction.java:73: Dispatching action = > info > (2015-11-18 22:30:20,515) INFO : BaseAction.java:73: Dispatching action = > info > (2015-11-18 22:30:20,516) INFO : InfoAction.java:53: Processing info > action > -- _______________ Brad Bebee CEO, Managing Partner SYSTAP, LLC e: be...@sy... m: 202.642.7961 f: 571.367.5000 w: www.blazegraph.com Blazegraph™ <http://www.blazegraph.com> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new technology to use GPUs to accelerate data-parallel graph analytics. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. |
|
From: Joakim S. <joa...@bl...> - 2015-11-18 22:37:37
|
Moved over to ubuntu, Java 8, another error, same location. new BigdataSail()
BlazeGraph(TM) Graph Engine
Flexible
Reliable
Affordable
Web-Scale Computing for the Enterprise
Copyright SYSTAP, LLC 2006-2015. All rights reserved.
ip-172-31-1-211.us-west-2.compute.internal
Wed Nov 18 22:30:20 UTC 2015
Linux/3.13.0-48-generic amd64
Intel(R) Xeon(R) CPU E5-2670 v2 @ 2.50GHz Family 6 Model 62 Stepping 4, GenuineIntel #CPU=8
Oracle Corporation 1.8.0_66
freeMemory=781155216
buildVersion=1.5.2-SNAPSHOT
Dependency License
ICU http://source.icu-project.org/repos/icu/icu/trunk/license.html
bigdata-ganglia http://www.apache.org/licenses/LICENSE-2.0.html
blueprints-core https://github.com/tinkerpop/blueprints/blob/master/LICENSE.txt
colt http://acs.lbl.gov/software/colt/license.html
commons-codec http://www.apache.org/licenses/LICENSE-2.0.html
commons-fileupload http://www.apache.org/licenses/LICENSE-2.0.html
commons-io http://www.apache.org/licenses/LICENSE-2.0.html
commons-logging http://www.apache.org/licenses/LICENSE-2.0.html
dsiutils http://www.gnu.org/licenses/lgpl-2.1.html
fastutil http://www.apache.org/licenses/LICENSE-2.0.html
flot http://www.opensource.org/licenses/mit-license.php
high-scale-lib http://creativecommons.org/licenses/publicdomain
httpclient http://www.apache.org/licenses/LICENSE-2.0.html
httpclient-cache http://www.apache.org/licenses/LICENSE-2.0.html
httpcore http://www.apache.org/licenses/LICENSE-2.0.html
httpmime http://www.apache.org/licenses/LICENSE-2.0.html
jackson-core http://www.apache.org/licenses/LICENSE-2.0.html
jetty http://www.apache.org/licenses/LICENSE-2.0.html
jquery https://github.com/jquery/jquery/blob/master/MIT-LICENSE.txt
log4j http://www.apache.org/licenses/LICENSE-2.0.html
lucene http://www.apache.org/licenses/LICENSE-2.0.html
nanohttp http://elonen.iki.fi/code/nanohttpd/#license
rexster-core https://github.com/tinkerpop/rexster/blob/master/LICENSE.txt
river http://www.apache.org/licenses/LICENSE-2.0.html
servlet-api http://www.apache.org/licenses/LICENSE-2.0.html
sesame http://www.openrdf.org/download.jsp
slf4j http://www.slf4j.org/license.html
zookeeper http://www.apache.org/licenses/LICENSE-2.0.html
INFO: com.bigdata.util.config.LogUtil: Configure: file:/opt/tomcat/webapps/dbpedia/WEB-INF/classes/log4j.properties
(2015-11-18 22:30:20,226) DEBUG: AbstractDynamicMBean.java:148: preRegister called. Server=com.sun.jmx.mbeanserver.JmxMBeanServer@e2d56bf, name=log4j:hierarchy=default
(2015-11-18 22:30:20,227) DEBUG: HierarchyDynamicMBean.java:260: postRegister is called.
java.lang.NoSuchMethodError: it.unimi.dsi.io.InputBitStream.<init>([BII)V
at com.bigdata.io.AbstractFixedByteArrayBuffer.getInputBitStream(AbstractFixedByteArrayBuffer.java:415)
at com.bigdata.btree.raba.codec.CanonicalHuffmanRabaCoder$CodedRabaImpl.<init>(CanonicalHuffmanRabaCoder.java:1514)
at com.bigdata.btree.raba.codec.CanonicalHuffmanRabaCoder.encodeLive(CanonicalHuffmanRabaCoder.java:1331)
at com.bigdata.btree.data.DefaultLeafCoder.encodeLive(DefaultLeafCoder.java:234)
at com.bigdata.btree.data.DefaultLeafCoder.encodeLive(DefaultLeafCoder.java:54)
at com.bigdata.btree.NodeSerializer.encodeLive(NodeSerializer.java:440)
at com.bigdata.btree.AbstractBTree.writeNodeOrLeaf(AbstractBTree.java:3853)
at com.bigdata.btree.AbstractBTree.writeNodeRecursive(AbstractBTree.java:3678)
at com.bigdata.btree.BTree.flush(BTree.java:756)
at com.bigdata.btree.BTree._writeCheckpoint2(BTree.java:961)
at com.bigdata.btree.BTree.writeCheckpoint2(BTree.java:922)
at com.bigdata.btree.BTree.writeCheckpoint(BTree.java:862)
at com.bigdata.journal.Name2Addr.registerIndex(Name2Addr.java:1061)
at com.bigdata.journal.AbstractJournal._register(AbstractJournal.java:5711)
at com.bigdata.journal.AbstractJournal.registerIndex(AbstractJournal.java:5604)
at com.bigdata.sparse.GlobalRowStoreHelper.getGlobalRowStore(GlobalRowStoreHelper.java:149)
at com.bigdata.journal.Journal.getGlobalRowStore(Journal.java:3746)
at com.bigdata.relation.locator.DefaultResourceLocator.locateResourceOn(DefaultResourceLocator.java:823)
at com.bigdata.relation.locator.DefaultResourceLocator.locateResource(DefaultResourceLocator.java:562)
at com.bigdata.relation.locator.DefaultResourceLocator.cacheMiss(DefaultResourceLocator.java:383)
at com.bigdata.relation.locator.DefaultResourceLocator.locate(DefaultResourceLocator.java:335)
at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:774)
at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:712)
at com.bigdata.rdf.sail.BigdataSail.<init>(BigdataSail.java:689)
at com.blippar.servlet.DataManager.initialize(DataManager.java:70)
at com.blippar.servlet.MinervaServlet.init(MinervaServlet.java:39)
at javax.servlet.GenericServlet.init(GenericServlet.java:158)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1231)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1144)
at org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:817)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:135)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:673)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1500)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1456)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
(2015-11-18 22:30:20,510) INFO : MinervaServlet.java:42: initialized? false
(2015-11-18 22:30:20,511) INFO : MinervaServlet.java:72: Query:action=info
(2015-11-18 22:30:20,511) INFO : MinervaServlet.java:72: Query:action=info
(2015-11-18 22:30:20,512) DEBUG: MinervaServlet.java:73: XML:
(2015-11-18 22:30:20,511) DEBUG: MinervaServlet.java:73: XML:
(2015-11-18 22:30:20,515) INFO : BaseAction.java:73: Dispatching action = info
(2015-11-18 22:30:20,515) INFO : BaseAction.java:73: Dispatching action = info
(2015-11-18 22:30:20,516) INFO : InfoAction.java:53: Processing info action |
|
From: Joakim S. <joa...@bl...> - 2015-11-18 18:34:19
|
Digging further into the problem, from localhost.2015-11-18.log, it seems that:
org.openrdf.query.resultio.TupleQueryResultParserRegistry.getKey(TupleQueryResultParserRegistry.java:52)
fails.
18-Nov-2015 17:41:08.522 INFO [localhost-startStop-1] org.apache.catalina.core.ApplicationContext.log ContextListener: contextInitialized()
18-Nov-2015 17:41:08.522 INFO [localhost-startStop-1] org.apache.catalina.core.ApplicationContext.log SessionListener: contextInitialized()
18-Nov-2015 17:41:29.021 SEVERE [http-nio-8080-exec-8] org.apache.catalina.core.ApplicationContext.log StandardWrapper.Throwable
java.lang.ExceptionInInitializerError
at com.bigdata.rdf.store.AbstractTripleStore.<init>(AbstractTripleStore.java:1355)
at com.bigdata.rdf.store.AbstractLocalTripleStore.<init>(AbstractLocalTripleStore.java:57)
at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:179)
at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:833)
at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:718)
at com.bigdata.rdf.sail.BigdataSail.<init>(BigdataSail.java:695)
at com.blippar.servlet.DataManager.initialize(DataManager.java:79)
at com.blippar.servlet.MinervaServlet.init(MinervaServlet.java:39)
at javax.servlet.GenericServlet.init(GenericServlet.java:158)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1231)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1144)
at org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:817)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:135)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:673)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1500)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1456)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NullPointerException
at org.openrdf.query.resultio.TupleQueryResultParserRegistry.getKey(TupleQueryResultParserRegistry.java:52)
at org.openrdf.query.resultio.TupleQueryResultParserRegistry.getKey(TupleQueryResultParserRegistry.java:27)
at info.aduna.lang.service.ServiceRegistry.add(ServiceRegistry.java:84)
at com.bigdata.rdf.ServiceProviderHook.forceLoad(ServiceProviderHook.java:258)
at com.bigdata.rdf.ServiceProviderHook.<clinit>(ServiceProviderHook.java:125)
... 28 more
18-Nov-2015 17:41:29.022 SEVERE [http-nio-8080-exec-8] org.apache.catalina.core.StandardWrapperValve.invoke Allocate exception for servlet com.blippar.servlet.MinervaServlet
java.lang.NullPointerException
at org.openrdf.query.resultio.TupleQueryResultParserRegistry.getKey(TupleQueryResultParserRegistry.java:52)
at org.openrdf.query.resultio.TupleQueryResultParserRegistry.getKey(TupleQueryResultParserRegistry.java:27)
at info.aduna.lang.service.ServiceRegistry.add(ServiceRegistry.java:84)
at com.bigdata.rdf.ServiceProviderHook.forceLoad(ServiceProviderHook.java:258)
at com.bigdata.rdf.ServiceProviderHook.<clinit>(ServiceProviderHook.java:125)
at com.bigdata.rdf.store.AbstractTripleStore.<init>(AbstractTripleStore.java:1355)
at com.bigdata.rdf.store.AbstractLocalTripleStore.<init>(AbstractLocalTripleStore.java:57)
at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:179)
at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:833)
at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:718)
at com.bigdata.rdf.sail.BigdataSail.<init>(BigdataSail.java:695)
at com.blippar.servlet.DataManager.initialize(DataManager.java:79)
at com.blippar.servlet.MinervaServlet.init(MinervaServlet.java:39)
at javax.servlet.GenericServlet.init(GenericServlet.java:158)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1231)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1144)
at org.apache.catalina.core.StandardWrapper.allocate(StandardWrapper.java:817)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:135)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:673)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1500)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1456)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
18-Nov-2015 17:41:29.058 SEVERE [http-nio-8080-exec-9] org.apache.catalina.core.ApplicationContext.log StandardWrapper.Throwable
java.lang.NoClassDefFoundError: Could not initialize class com.bigdata.rdf.ServiceProviderHook
at com.bigdata.rdf.store.AbstractTripleStore.<init>(AbstractTripleStore.java:1355)
at com.bigdata.rdf.store.AbstractLocalTripleStore.<init>(AbstractLocalTripleStore.java:57)
at com.bigdata.rdf.store.LocalTripleStore.<init>(LocalTripleStore.java:179)
at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:833)
at com.bigdata.rdf.sail.BigdataSail.createLTS(BigdataSail.java:718)
at com.bigdata.rdf.sail.BigdataSail.<init>(BigdataSail.java:695)
at com.blippar.servlet.DataManager.initialize(DataManager.java:79)
at com.blippar.servlet.MinervaServlet.init(MinervaServlet.java:39)
at javax.servlet.GenericServlet.init(GenericServlet.java:158)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1231)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1144)
-UU-:%%--F1 localhost.2015-11-18.log Top L1 (Fundamental) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Beginning of buffer
> On Nov 18, 2015, at 7:58 AM, Brad Bebee <be...@sy...> wrote:
>
> Joakim,
>
> 1.5.3 is available on our hosted-maven repository [1]. For 2.0, we'll be releasing on maven central under com.blazegraph. Regarding your error, it looks like you are starting the embedded Sail with the same properties used for the NanoSparqlServer. Should that be a SailRepositoryConnection to get a connection to the NSS endpoint?
>
> Thanks, --Brad
>
> [1] http://www.systap.com/maven/releases/com/bigdata/bigdata/1.5.3/bigdata-1.5.3.pom <http://www.systap.com/maven/releases/com/bigdata/bigdata/1.5.3/bigdata-1.5.3.pom>
>
> On Wed, Nov 18, 2015 at 10:41 AM, Joakim Soderberg <joa...@bl... <mailto:joa...@bl...>> wrote:
> I have been running Blazegraph 1.5.2 in embedded mode (apache-tomcat-8.0.27) for a few months ( Ill upgrade to 1.5.3 when available on Maven).
> After moving Tomcat to another volume with a minor update (apache-tomcat-8.0.27) I can no longer run my service.
>
> The servlet initializes twice. The first time Blazegraph engine starts, but it seems that at the end of its loading process, it fires an new init() to the servlet
>
>
> (2015-11-18 07:25:37,697) INFO : DataManager.java:62: Default configuration loaded: {serverPathTojnl=/mydata/blazegraph/}
>
> (2015-11-18 07:25:37,699) INFO : DataManager.java:78: Blazegraph configuration loaded: {com.bigdata.namespace.kb.spo.com.bigdata.btree.BTree.branchingFactor=1024, com.bigdata.journal.AbstractJournal.bufferMode=DiskRW, com.bigdata.journal.AbstractJournal.file=/mydata/blazegraph/dbpedia2015.jnl, com.bigdata.journal.AbstractJournal.initialExtent=209715200, com.bigdata.rdf.store.AbstractTripleStore.textIndex=true , com.bigdata.btree.BTree.branchingFactor=512, com.bigdata.namespace.kb.lex.com.bigdata.btree.BTree.branchingFactor=400, com.bigdata.rdf.store.AbstractTripleStore.axiomsClass=com.bigdata.rdf.axioms.NoAxioms, com.bigdata.rdf.sail.bufferCapacity=100000, com.bigdata.service.AbstractTransactionService.minReleaseAge=1, com.bigdata.rdf.sail.truthMaintenance=false , com.bigdata.journal.AbstractJournal.maximumExtent=209715200, com.bigdata.rdf.store.AbstractTripleStore.justify=false, com.bigdata.namespace.kb.spo.OSP.com.bigdata.btree.BTree.branchingFactor=512, com.bigdata.rdf.store.AbstractTripleStore.quads=false, com.bigdata.namespace.kb.spo.POS.com.bigdata.btree.BTree.branchingFactor=512, com.bigdata.rdf.rio.RDFParserOptions.datatypeHandling=IGNORE, com.bigdata.btree.writeRetentionQueue.capacity=8000, com.bigdata.rdf.rio.RDFParserOptions.verifyData=false, com.bigdata.rdf.store.DataLoader.commit=Incremental, com.bigdata.rdf.rio.RDFParserOptions.stopAtFirstError=false, com.bigdata.rdf.rio.RDFParserOptions.preserveBNodeIDs=false, com.bigdata.namespace.kb.spo.SPO.com.bigdata.btree.BTree.branchingFactor=512, com.bigdata.rdf.store.AbstractTripleStore.statementIdentifiers=false}
>
> (2015-11-18 07:25:37,744) INFO : SystemUtil.java:90: architecture: amd64
> (2015-11-18 07:25:37,744) INFO : SystemUtil.java:91: operating system: Linux
> (2015-11-18 07:25:37,745) INFO : SystemUtil.java:92: operation system version: 3.10.0-229.20.1.el7.x86_64
> (2015-11-18 07:25:37,745) INFO : SystemUtil.java:93: #processors: 8
> (2015-11-18 07:25:37,745) INFO : SystemUtil.java:94: cpu info: Intel(R) Xeon(R) CPU E5-2670 v2 @ 2.50GHz Family 6 Model 62 Stepping 4, GenuineIntel
>
> BlazeGraph(TM) Graph Engine
>
> Flexible
> Reliable
> Affordable
> Web-Scale Computing for the Enterprise
>
> Copyright SYSTAP, LLC 2006-2015. All rights reserved.
>
> ip-172-31-11-213.us <http://ip-172-31-11-213.us/>-west-2.compute.internal
> Wed Nov 18 07:25:37 UTC 2015
> Linux/3.10.0-229.20.1.el7.x86_64 amd64
> Intel(R) Xeon(R) CPU E5-2670 v2 @ 2.50GHz Family 6 Model 62 Stepping 4, GenuineIntel #CPU=8
> Oracle Corporation 1.8.0_45
> freeMemory=1446459088
> buildVersion=1.5.2-SNAPSHOT
>
> Dependency License
> ICU http://source.icu-project.org/repos/icu/icu/trunk/license.html <http://source.icu-project.org/repos/icu/icu/trunk/license.html>
> bigdata-ganglia http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> blueprints-core https://github.com/tinkerpop/blueprints/blob/master/LICENSE.txt <https://github.com/tinkerpop/blueprints/blob/master/LICENSE.txt>
> colt http://acs.lbl.gov/software/colt/license.html <http://acs.lbl.gov/software/colt/license.html>
> commons-codec http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> commons-fileupload http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> commons-io http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> commons-logging http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> dsiutils http://www.gnu.org/licenses/lgpl-2.1.html <http://www.gnu.org/licenses/lgpl-2.1.html>
> fastutil http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> flot http://www.opensource.org/licenses/mit-license.php <http://www.opensource.org/licenses/mit-license.php>
> high-scale-lib http://creativecommons.org/licenses/publicdomain <http://creativecommons.org/licenses/publicdomain>
> httpclient http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> httpclient-cache http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> httpcore http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> httpmime http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> jackson-core http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> jetty http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> jquery https://github.com/jquery/jquery/blob/master/MIT-LICENSE.txt <https://github.com/jquery/jquery/blob/master/MIT-LICENSE.txt>
> log4j http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> lucene http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> nanohttp http://elonen.iki.fi/code/nanohttpd/#license <http://elonen.iki.fi/code/nanohttpd/#license>
> rexster-core https://github.com/tinkerpop/rexster/blob/master/LICENSE.txt <https://github.com/tinkerpop/rexster/blob/master/LICENSE.txt>
> river http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> servlet-api http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
> sesame http://www.openrdf.org/download.jsp <http://www.openrdf.org/download.jsp>
> slf4j http://www.slf4j.org/license.html <http://www.slf4j.org/license.html>
> zookeeper http://www.apache.org/licenses/LICENSE-2.0.html <http://www.apache.org/licenses/LICENSE-2.0.html>
>
> INFO: com.bigdata.util.config.LogUtil: Configure: file:/myserver/opt/apache-tomcat-8.0.27/webapps/dbpedia/WEB-INF/classes/log4j.properties
> (2015-11-18 07:25:37,754) DEBUG: AbstractDynamicMBean.java:148: preRegister called. Server=com.sun.jmx.mbeanserver.JmxMBeanServer@16b3fc9e, name=log4j:hierarchy=default
> (2015-11-18 07:25:37,754) DEBUG: HierarchyDynamicMBean.java:260: postRegister is called.
> (2015-11-18 07:25:38,078) WARN : ServiceProviderHook.java:172: Running.
> (2015-11-18 07:25:38,087) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.rio.turtle.TurtleParserFactory
> (2015-11-18 07:25:38,088) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.rio.ntriples.NTriplesParserFactory
> (2015-11-18 07:25:38,089) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.rio.n3.N3ParserFactory
> (2015-11-18 07:25:38,089) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.rio.nquads.NQuadsParserFactory
> (2015-11-18 07:25:38,090) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.rio.binary.BinaryRDFParserFactory
> (2015-11-18 07:25:38,091) DEBUG: ServiceRegistry.java:61: Registered service class com.bigdata.rdf.rio.ntriples.BigdataNTriplesParserFactory
> (2015-11-18 07:25:38,091) DEBUG: ServiceRegistry.java:61: Registered service class com.bigdata.rdf.rio.turtle.BigdataTurtleParserFactory
> (2015-11-18 07:25:38,092) DEBUG: ServiceRegistry.java:61: Registered service class com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONParserForConstructFactory
> (2015-11-18 07:25:38,092) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.rio.rdfxml.RDFXMLParserFactory
> (2015-11-18 07:25:38,093) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.rio.rdfjson.RDFJSONParserFactory
> (2015-11-18 07:25:38,096) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.rio.trig.TriGParserFactory
> (2015-11-18 07:25:38,097) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.rio.trix.TriXParserFactory
> (2015-11-18 07:25:38,104) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.query.resultio.binary.BinaryQueryResultWriterFactory
> (2015-11-18 07:25:38,104) DEBUG: ServiceRegistry.java:61: Registered service class com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONWriterFactory
> (2015-11-18 07:25:38,105) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.query.resultio.text.csv.SPARQLResultsCSVWriterFactory
> (2015-11-18 07:25:38,105) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.query.resultio.text.tsv.SPARQLResultsTSVWriterFactory
> (2015-11-18 07:25:38,106) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.query.resultio.sparqlxml.SPARQLResultsXMLWriterFactory
> (2015-11-18 07:25:38,109) WARN : ServiceRegistry.java:57: New service class org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONWriterFactory replaces existing service class com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONWriterFactory
> (2015-11-18 07:25:38,109) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONWriterFactory
> (2015-11-18 07:25:38,114) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.query.resultio.binary.BinaryQueryResultParserFactory
> (2015-11-18 07:25:38,115) DEBUG: ServiceRegistry.java:61: Registered service class com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONParserFactory
> (2015-11-18 07:25:38,115) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.query.resultio.text.csv.SPARQLResultsCSVParserFactory
> (2015-11-18 07:25:38,116) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.query.resultio.text.tsv.SPARQLResultsTSVParserFactory
> (2015-11-18 07:25:38,116) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.query.resultio.sparqlxml.SPARQLResultsXMLParserFactory
> (2015-11-18 07:25:38,119) WARN : ServiceRegistry.java:57: New service class org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONParserFactory replaces existing service class com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONParserFactory
> (2015-11-18 07:25:38,119) DEBUG: ServiceRegistry.java:61: Registered service class org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONParserFactory
> realPath: /myserver/opt/apache-tomcat-8.0.27/webapps/dbpedia/ <== here it has restarted init()
> log4j:WARN No appenders could be found for logger (org.apache.log4j.jmx.HierarchyDynamicMBean). <== what is this? zookeeper?
> log4j:WARN Please initialize the log4j system properly.
> log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig <http://logging.apache.org/log4j/1.2/faq.html#noconfig> for more info.
> (2015-11-18 07:25:38,126) DEBUG: PropertyConfigurator.java:770: addAppenderEvent called: logger=root, appender=devDest
> (2015-11-18 07:25:38,126) DEBUG: PropertyConfigurator.java:770: sending notification.
> (2015-11-18 07:25:38,127) DEBUG: PropertyConfigurator.java:759: removeAppenderCalled: logger=com.bigdata.relation.rule.eval.RuleLog, appender=ruleLog
> (2015-11-18 07:25:38,128) DEBUG: PropertyConfigurator.java:770: addAppenderEvent called: logger=com.bigdata.relation.rule.eval.RuleLog, appender=ruleLog
> (2015-11-18 07:25:38,128) DEBUG: PropertyConfigurator.java:770: sending notification.
> (2015-11-18 07:25:38,128) INFO : DataManager.java:62: Default configuration loaded: {serverPathTojnl=/mydata/blazegraph/}
> (2015-11-18 07:25:38,129) INFO : DataManager.java:78: Blazegraph configuration loaded: {com.bigdata.namespace.kb.spo.com.bigdata.btree.BTree.branchingFactor=1024, com.bigdata.journal.AbstractJournal.bufferMode=DiskRW, com.bigdata.journal.AbstractJournal.file=/mydata/blazegraph/dbpedia2015.jnl, com.bigdata.journal.AbstractJournal.initialExtent=209715200, com.bigdata.rdf.store.AbstractTripleStore.textIndex=true , com.bigdata.btree.BTree.branchingFactor=512, com.bigdata.namespace.kb.lex.com.bigdata.btree.BTree.branchingFactor=400, com.bigdata.rdf.store.AbstractTripleStore.axiomsClass=com.bigdata.rdf.axioms.NoAxioms, com.bigdata.rdf.sail.bufferCapacity=100000, com.bigdata.service.AbstractTransactionService.minReleaseAge=1, com.bigdata.rdf.sail.truthMaintenance=false , com.bigdata.journal.AbstractJournal.maximumExtent=209715200, com.bigdata.rdf.store.AbstractTripleStore.justify=false, com.bigdata.namespace.kb.spo.OSP.com.bigdata.btree.BTree.branchingFactor=512, com.bigdata.rdf.store.AbstractTripleStore.quads=false, com.bigdata.namespace.kb.spo.POS.com.bigdata.btree.BTree.branchingFactor=512, com.bigdata.rdf.rio.RDFParserOptions.datatypeHandling=IGNORE, com.bigdata.btree.writeRetentionQueue.capacity=8000, com.bigdata.rdf.rio.RDFParserOptions.verifyData=false, com.bigdata.rdf.store.DataLoader.commit=Incremental, com.bigdata.rdf.rio.RDFParserOptions.stopAtFirstError=false, com.bigdata.rdf.rio.RDFParserOptions.preserveBNodeIDs=false, com.bigdata.namespace.kb.spo.SPO.com.bigdata.btree.BTree.branchingFactor=512, com.bigdata.rdf.store.AbstractTripleStore.statementIdentifiers=false} <= it loads the blazegrpah properties again
>
> the line far this is
> sail = new BigdataSail(blazegraphsProps); which hangs
>
>
> ------------------------------------------------------------------------------
>
> _______________________________________________
> Bigdata-developers mailing list
> Big...@li... <mailto:Big...@li...>
> https://lists.sourceforge.net/lists/listinfo/bigdata-developers <https://lists.sourceforge.net/lists/listinfo/bigdata-developers>
>
>
>
>
> --
> _______________
> Brad Bebee
> CEO, Managing Partner
> SYSTAP, LLC
> e: be...@sy... <mailto:be...@sy...>
> m: 202.642.7961
> f: 571.367.5000
> w: www.blazegraph.com <http://www.blazegraph.com/>
>
> Blazegraph™ <http://www.blazegraph.com/> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new technology to use GPUs to accelerate data-parallel graph analytics.
>
> CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments.
>
>
|
|
From: Brad B. <be...@sy...> - 2015-11-18 15:58:25
|
Joakim, 1.5.3 is available on our hosted-maven repository [1]. For 2.0, we'll be releasing on maven central under com.blazegraph. Regarding your error, it looks like you are starting the embedded Sail with the same properties used for the NanoSparqlServer. Should that be a SailRepositoryConnection to get a connection to the NSS endpoint? Thanks, --Brad [1] http://www.systap.com/maven/releases/com/bigdata/bigdata/1.5.3/bigdata-1.5.3.pom On Wed, Nov 18, 2015 at 10:41 AM, Joakim Soderberg < joa...@bl...> wrote: > I have been running Blazegraph 1.5.2 in embedded mode > (apache-tomcat-8.0.27) for a few months ( Ill upgrade to 1.5.3 when > available on Maven). > After moving Tomcat to another volume with a minor update > (apache-tomcat-8.0.27) I can no longer run my service. > > The servlet initializes twice. The first time Blazegraph engine starts, > but it seems that at the end of its loading process, it fires an new init() > to the servlet > > > (2015-11-18 07:25:37,697) INFO : DataManager.java:62: Default > configuration loaded: {serverPathTojnl=/mydata/blazegraph/} > > (2015-11-18 07:25:37,699) INFO : DataManager.java:78: Blazegraph > configuration loaded: > {com.bigdata.namespace.kb.spo.com.bigdata.btree.BTree.branchingFactor=1024, > com.bigdata.journal.AbstractJournal.bufferMode=DiskRW, > com.bigdata.journal.AbstractJournal.file=/mydata/blazegraph/dbpedia2015.jnl, > com.bigdata.journal.AbstractJournal.initialExtent=209715200, > com.bigdata.rdf.store.AbstractTripleStore.textIndex=true , > com.bigdata.btree.BTree.branchingFactor=512, > com.bigdata.namespace.kb.lex.com.bigdata.btree.BTree.branchingFactor=400, > com.bigdata.rdf.store.AbstractTripleStore.axiomsClass=com.bigdata.rdf.axioms.NoAxioms, > com.bigdata.rdf.sail.bufferCapacity=100000, > com.bigdata.service.AbstractTransactionService.minReleaseAge=1, > com.bigdata.rdf.sail.truthMaintenance=false , > com.bigdata.journal.AbstractJournal.maximumExtent=209715200, > com.bigdata.rdf.store.AbstractTripleStore.justify=false, > com.bigdata.namespace.kb.spo.OSP.com.bigdata.btree.BTree.branchingFactor=512, > com.bigdata.rdf.store.AbstractTripleStore.quads=false, > com.bigdata.namespace.kb.spo.POS.com.bigdata.btree.BTree.branchingFactor=512, > com.bigdata.rdf.rio.RDFParserOptions.datatypeHandling=IGNORE, > com.bigdata.btree.writeRetentionQueue.capacity=8000, > com.bigdata.rdf.rio.RDFParserOptions.verifyData=false, > com.bigdata.rdf.store.DataLoader.commit=Incremental, > com.bigdata.rdf.rio.RDFParserOptions.stopAtFirstError=false, > com.bigdata.rdf.rio.RDFParserOptions.preserveBNodeIDs=false, > com.bigdata.namespace.kb.spo.SPO.com.bigdata.btree.BTree.branchingFactor=512, > com.bigdata.rdf.store.AbstractTripleStore.statementIdentifiers=false} > > (2015-11-18 07:25:37,744) INFO : SystemUtil.java:90: architecture: amd64 > (2015-11-18 07:25:37,744) INFO : SystemUtil.java:91: operating system: > Linux > (2015-11-18 07:25:37,745) INFO : SystemUtil.java:92: operation system > version: 3.10.0-229.20.1.el7.x86_64 > (2015-11-18 07:25:37,745) INFO : SystemUtil.java:93: #processors: 8 > (2015-11-18 07:25:37,745) INFO : SystemUtil.java:94: cpu info: Intel(R) > Xeon(R) CPU E5-2670 v2 @ 2.50GHz Family 6 Model 62 Stepping 4, GenuineIntel > > BlazeGraph(TM) Graph Engine > > Flexible > Reliable > Affordable > Web-Scale Computing for the Enterprise > > Copyright SYSTAP, LLC 2006-2015. All rights reserved. > > ip-172-31-11-213.us-west-2.compute.internal > Wed Nov 18 07:25:37 UTC 2015 > Linux/3.10.0-229.20.1.el7.x86_64 amd64 > Intel(R) Xeon(R) CPU E5-2670 v2 @ 2.50GHz Family 6 Model 62 Stepping 4, > GenuineIntel #CPU=8 > Oracle Corporation 1.8.0_45 > freeMemory=1446459088 > buildVersion=1.5.2-SNAPSHOT > > Dependency License > > ICU > http://source.icu-project.org/repos/icu/icu/trunk/license.html > bigdata-ganglia http://www.apache.org/licenses/LICENSE-2.0.html > > blueprints-core > https://github.com/tinkerpop/blueprints/blob/master/LICENSE.txt > colt http://acs.lbl.gov/software/colt/license.html > > commons-codec http://www.apache.org/licenses/LICENSE-2.0.html > > commons-fileupload http://www.apache.org/licenses/LICENSE-2.0.html > > commons-io http://www.apache.org/licenses/LICENSE-2.0.html > > commons-logging http://www.apache.org/licenses/LICENSE-2.0.html > > dsiutils http://www.gnu.org/licenses/lgpl-2.1.html > > fastutil http://www.apache.org/licenses/LICENSE-2.0.html > > flot http://www.opensource.org/licenses/mit-license.php > > high-scale-lib http://creativecommons.org/licenses/publicdomain > > httpclient http://www.apache.org/licenses/LICENSE-2.0.html > > httpclient-cache http://www.apache.org/licenses/LICENSE-2.0.html > > httpcore http://www.apache.org/licenses/LICENSE-2.0.html > > httpmime http://www.apache.org/licenses/LICENSE-2.0.html > > jackson-core http://www.apache.org/licenses/LICENSE-2.0.html > > jetty http://www.apache.org/licenses/LICENSE-2.0.html > > jquery > https://github.com/jquery/jquery/blob/master/MIT-LICENSE.txt > log4j http://www.apache.org/licenses/LICENSE-2.0.html > > lucene http://www.apache.org/licenses/LICENSE-2.0.html > > nanohttp http://elonen.iki.fi/code/nanohttpd/#license > > rexster-core > https://github.com/tinkerpop/rexster/blob/master/LICENSE.txt > river http://www.apache.org/licenses/LICENSE-2.0.html > > servlet-api http://www.apache.org/licenses/LICENSE-2.0.html > > sesame http://www.openrdf.org/download.jsp > > slf4j http://www.slf4j.org/license.html > > zookeeper http://www.apache.org/licenses/LICENSE-2.0.html > > > INFO: com.bigdata.util.config.LogUtil: Configure: > file:/myserver/opt/apache-tomcat-8.0.27/webapps/dbpedia/WEB-INF/classes/log4j.properties > (2015-11-18 07:25:37,754) DEBUG: AbstractDynamicMBean.java:148: > preRegister called. Server=com.sun.jmx.mbeanserver.JmxMBeanServer@16b3fc9e, > name=log4j:hierarchy=default > (2015-11-18 07:25:37,754) DEBUG: HierarchyDynamicMBean.java:260: > postRegister is called. > (2015-11-18 07:25:38,078) WARN : ServiceProviderHook.java:172: Running. > (2015-11-18 07:25:38,087) DEBUG: ServiceRegistry.java:61: Registered > service class org.openrdf.rio.turtle.TurtleParserFactory > (2015-11-18 07:25:38,088) DEBUG: ServiceRegistry.java:61: Registered > service class org.openrdf.rio.ntriples.NTriplesParserFactory > (2015-11-18 07:25:38,089) DEBUG: ServiceRegistry.java:61: Registered > service class org.openrdf.rio.n3.N3ParserFactory > (2015-11-18 07:25:38,089) DEBUG: ServiceRegistry.java:61: Registered > service class org.openrdf.rio.nquads.NQuadsParserFactory > (2015-11-18 07:25:38,090) DEBUG: ServiceRegistry.java:61: Registered > service class org.openrdf.rio.binary.BinaryRDFParserFactory > (2015-11-18 07:25:38,091) DEBUG: ServiceRegistry.java:61: Registered > service class com.bigdata.rdf.rio.ntriples.BigdataNTriplesParserFactory > (2015-11-18 07:25:38,091) DEBUG: ServiceRegistry.java:61: Registered > service class com.bigdata.rdf.rio.turtle.BigdataTurtleParserFactory > (2015-11-18 07:25:38,092) DEBUG: ServiceRegistry.java:61: Registered > service class > com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONParserForConstructFactory > (2015-11-18 07:25:38,092) DEBUG: ServiceRegistry.java:61: Registered > service class org.openrdf.rio.rdfxml.RDFXMLParserFactory > (2015-11-18 07:25:38,093) DEBUG: ServiceRegistry.java:61: Registered > service class org.openrdf.rio.rdfjson.RDFJSONParserFactory > (2015-11-18 07:25:38,096) DEBUG: ServiceRegistry.java:61: Registered > service class org.openrdf.rio.trig.TriGParserFactory > (2015-11-18 07:25:38,097) DEBUG: ServiceRegistry.java:61: Registered > service class org.openrdf.rio.trix.TriXParserFactory > (2015-11-18 07:25:38,104) DEBUG: ServiceRegistry.java:61: Registered > service class > org.openrdf.query.resultio.binary.BinaryQueryResultWriterFactory > (2015-11-18 07:25:38,104) DEBUG: ServiceRegistry.java:61: Registered > service class com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONWriterFactory > (2015-11-18 07:25:38,105) DEBUG: ServiceRegistry.java:61: Registered > service class > org.openrdf.query.resultio.text.csv.SPARQLResultsCSVWriterFactory > (2015-11-18 07:25:38,105) DEBUG: ServiceRegistry.java:61: Registered > service class > org.openrdf.query.resultio.text.tsv.SPARQLResultsTSVWriterFactory > (2015-11-18 07:25:38,106) DEBUG: ServiceRegistry.java:61: Registered > service class > org.openrdf.query.resultio.sparqlxml.SPARQLResultsXMLWriterFactory > (2015-11-18 07:25:38,109) WARN : ServiceRegistry.java:57: New service > class org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONWriterFactory > replaces existing service class > com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONWriterFactory > (2015-11-18 07:25:38,109) DEBUG: ServiceRegistry.java:61: Registered > service class > org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONWriterFactory > (2015-11-18 07:25:38,114) DEBUG: ServiceRegistry.java:61: Registered > service class > org.openrdf.query.resultio.binary.BinaryQueryResultParserFactory > (2015-11-18 07:25:38,115) DEBUG: ServiceRegistry.java:61: Registered > service class com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONParserFactory > (2015-11-18 07:25:38,115) DEBUG: ServiceRegistry.java:61: Registered > service class > org.openrdf.query.resultio.text.csv.SPARQLResultsCSVParserFactory > (2015-11-18 07:25:38,116) DEBUG: ServiceRegistry.java:61: Registered > service class > org.openrdf.query.resultio.text.tsv.SPARQLResultsTSVParserFactory > (2015-11-18 07:25:38,116) DEBUG: ServiceRegistry.java:61: Registered > service class > org.openrdf.query.resultio.sparqlxml.SPARQLResultsXMLParserFactory > (2015-11-18 07:25:38,119) WARN : ServiceRegistry.java:57: New service > class org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONParserFactory > replaces existing service class > com.bigdata.rdf.rio.json.BigdataSPARQLResultsJSONParserFactory > (2015-11-18 07:25:38,119) DEBUG: ServiceRegistry.java:61: Registered > service class > org.openrdf.query.resultio.sparqljson.SPARQLResultsJSONParserFactory > *realPath: /myserver/opt/apache-tomcat-8.0.27/webapps/dbpedia/ <== here it > has restarted init()* > log4j:WARN No appenders could be found for logger > (org.apache.log4j.jmx.HierarchyDynamicMBean). *<== what is this? > zookeeper?* > log4j:WARN Please initialize the log4j system properly. > log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for > more info. > (2015-11-18 07:25:38,126) DEBUG: PropertyConfigurator.java:770: > addAppenderEvent called: logger=root, appender=devDest > (2015-11-18 07:25:38,126) DEBUG: PropertyConfigurator.java:770: sending > notification. > (2015-11-18 07:25:38,127) DEBUG: PropertyConfigurator.java:759: > removeAppenderCalled: logger=com.bigdata.relation.rule.eval.RuleLog, > appender=ruleLog > (2015-11-18 07:25:38,128) DEBUG: PropertyConfigurator.java:770: > addAppenderEvent called: logger=com.bigdata.relation.rule.eval.RuleLog, > appender=ruleLog > (2015-11-18 07:25:38,128) DEBUG: PropertyConfigurator.java:770: sending > notification. > (2015-11-18 07:25:38,128) INFO : DataManager.java:62: Default > configuration loaded: {serverPathTojnl=/mydata/blazegraph/} > (2015-11-18 07:25:38,129) INFO : DataManager.java:78: Blazegraph > configuration loaded: > {com.bigdata.namespace.kb.spo.com.bigdata.btree.BTree.branchingFactor=1024, > com.bigdata.journal.AbstractJournal.bufferMode=DiskRW, > com.bigdata.journal.AbstractJournal.file=/mydata/blazegraph/dbpedia2015.jnl, > com.bigdata.journal.AbstractJournal.initialExtent=209715200, > com.bigdata.rdf.store.AbstractTripleStore.textIndex=true , > com.bigdata.btree.BTree.branchingFactor=512, > com.bigdata.namespace.kb.lex.com.bigdata.btree.BTree.branchingFactor=400, > com.bigdata.rdf.store.AbstractTripleStore.axiomsClass=com.bigdata.rdf.axioms.NoAxioms, > com.bigdata.rdf.sail.bufferCapacity=100000, > com.bigdata.service.AbstractTransactionService.minReleaseAge=1, > com.bigdata.rdf.sail.truthMaintenance=false , > com.bigdata.journal.AbstractJournal.maximumExtent=209715200, > com.bigdata.rdf.store.AbstractTripleStore.justify=false, > com.bigdata.namespace.kb.spo.OSP.com.bigdata.btree.BTree.branchingFactor=512, > com.bigdata.rdf.store.AbstractTripleStore.quads=false, > com.bigdata.namespace.kb.spo.POS.com.bigdata.btree.BTree.branchingFactor=512, > com.bigdata.rdf.rio.RDFParserOptions.datatypeHandling=IGNORE, > com.bigdata.btree.writeRetentionQueue.capacity=8000, > com.bigdata.rdf.rio.RDFParserOptions.verifyData=false, > com.bigdata.rdf.store.DataLoader.commit=Incremental, > com.bigdata.rdf.rio.RDFParserOptions.stopAtFirstError=false, > com.bigdata.rdf.rio.RDFParserOptions.preserveBNodeIDs=false, > com.bigdata.namespace.kb.spo.SPO.com.bigdata.btree.BTree.branchingFactor=512, > com.bigdata.rdf.store.AbstractTripleStore.statementIdentifiers=false} *<= > it loads the blazegrpah properties again* > > *the line far this is* > sail = new BigdataSail(blazegraphsProps); which hangs > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > Bigdata-developers mailing list > Big...@li... > https://lists.sourceforge.net/lists/listinfo/bigdata-developers > > -- _______________ Brad Bebee CEO, Managing Partner SYSTAP, LLC e: be...@sy... m: 202.642.7961 f: 571.367.5000 w: www.blazegraph.com Blazegraph™ <http://www.blazegraph.com> is our ultra high-performance graph database that supports both RDF/SPARQL and Tinkerpop/Blueprints APIs. Mapgraph™ <http://www.systap.com/mapgraph> is our disruptive new technology to use GPUs to accelerate data-parallel graph analytics. CONFIDENTIALITY NOTICE: This email and its contents and attachments are for the sole use of the intended recipient(s) and are confidential or proprietary to SYSTAP, LLC. Any unauthorized review, use, disclosure, dissemination or copying of this email or its contents or attachments is prohibited. If you have received this communication in error, please notify the sender by reply email and permanently delete all copies of the email and its contents and attachments. |
27 messages has been excluded from this view by a project administrator.
