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Welcome to the bictools wiki!

This page contains all necessary information to perform a variant detection with BICEPs. However, you will require a list of software installed on your computer to run the analysis smoothly.

• KNIME with OpenMS Extension (http://www.knime.org/downloads/overview)
• python 2.7 (https://www.python.org/)

In addition you need the following python packages:

• pandas (http://www.pandas.pydata.org)
• HTSeq (http://www-huber.embl.de/HTSeq/)
• matplotlib (http://www.matplotlib.org)
• pyopenms (https://pypi.python.org/pypi/pyopenms)
• brewer2mpl (https://pypi.python.org/pypi/brewer2mpl/1.4)

Useful Links:

• [bictools - KNIME]
• [bictools - Python]
• [walkthrough]

The wiki uses Markdown syntax.

Project Members:

• Giese, Sven (admin)