Charles Warden - 2013-05-16

Developer: Charles Warden (cwarden [at] coh [dot] org)

Signature Description: Signature associated with lymph node status in breast cancer patients

Criteria for Gene Selection: |fold-change| > 1.2, FDR < 0.05

Software Used for Gene Selection: BRAVO (1)

Publication for Training Dataset: TCGA (2)

Publication for Signature Application: BD-Func (3)

  1. Deng X, Warden C, Liu Z, Zhang I, Yuan Y-C BRAVO: biomarkers recognition and validation online. in preparation.
  2. The Cancer Genome Atlas Network (2012) Comprehensive molecular portraits of human breast tumours. Nature 490: 61-70.
  3. Warden C, Kanaya N, Chen S, Yuan Y-C BD-Func: A Streamlined Algorithm for Predicting Activation and Inhibition of Pathways. in preparation.
 

Last edit: Charles Warden 2013-05-16
COH_LN_sig.txt