BD-Func Activity
Bidirectional Functional Enrichment of Gene Expression Data
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cwarden45
Activity for BD-Func
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BD-Func released /BD-Func-1.1.7.zip
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Charles Warden modified a comment on discussion sRAP Issues
Hi, If you find the sRAP package useful, I think that is great! However, I don't currently use the sRAP package: I personally use a template-based system, where I frequently have to modify the code (which requires a little more flexiablity than a more formal package, and also makes providing support of scripts for other people more problematic). That said, I do still frequently use BD-Func, so please continue to post questions in the forum in the other sections. I apologize for the confusion and...
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Hi, If you find the sRAP package useful, I think that is great! However, I don't currently use the sRAP package: I personally use a template-based system, where I frequently have to modify the code (which requires a little more flexiablity than a more formal package, and also makes providing support of scripts for other people more problematic). That said, I do still frequently use BD-Func, so please continue to post questions in the forum in the other sections. Thanks, Charles
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UPDATE: The yeast GO terms are pretty different than the human and mouse GO terms....
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Thank you for using sRAP. sRAP (and I assume CLC Bio) will be giving you a list of...
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Hi, The expression.table is just a file name. The file is not read until after the...
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Hi, The expression.table is just a file name. The file is not read until after the...
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Hi, The expression.table is just a file name. The file is not read until after the...
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I really find your paper interesting because I have some weird statistic after the...
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Here are the possible suggestions that I can think of: 1) What was the total number...
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Here are the possible suggestions that I can think of: 1) What was the total number...
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I would probably try to leave the log2Ratio as is. At least the way I define fold-change,...
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Ok, good - this makes sense. If you do use Excel, you should remember that those...
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Ok - in the long term, I will work on troubleshooting this problem (since it would...
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Thank you for using sRAP! I may have to sit down to review the code more carefully,...
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There are two ways to use BD-Func (standalone version provided here and the sRAP...
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