taxtree.sh usage guide outdated?
BBMap short read aligner, and other bioinformatic tools.
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brian-jgi
I was following the example at:
https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/taxonomy-guide/
which gave this example command:
taxtree.sh names.dmp nodes.dmp tree.taxtree.gz
and got this error:
taxtree.sh taxdmp/names.dmp taxdmp/nodes.dmp tree.taxtree.gz
java -ea -Xmx20310m -Xms20310m -cp /home/fosterz/miniconda3/envs/bbtools/bbtools/lib/current/ tax.TaxTree taxdmp/names.dmp taxdmp/nodes.dmp tree.taxtree.gz
Exception in thread "main" java.lang.AssertionError: TaxTree syntax:
taxtree.sh names.dmp nodes.dmp merged.dmp tree.taxtree.gz
at tax.TaxTree.main(TaxTree.java:38)
It looks like a third positional parameter is required now?