[basedb-devel] Feedback to BASE information

[Pugliese, P. <phi...@fa...>]

Dear support team,

briefly to me: my name is Philipp Pugliese and I researched for the 
Friedrich-Alexander-Universität Erlangen-Nürnberg about functions that 
BASE seems to fulfill.

For a congress publication I created a matrix in which BASE is 
mentioned. Could you please give me some feedback as to whether the 
information I found in the literature is correct or up to date?

The information is:

Brief description of BASE: Is an information and analysis tool for 
microarrays that tracks all materials from biosource to raw data to 
analyses. The elements can be annotated and used as factors in the 
downstream analysis


General
      Abbreviation: BioArray Software Environment
      FAIR reference: unknown
      Note: -

Community
      Institution: Lund University
      Reference: Saal et al. 2002
      PMID: 12186655
      Software availability: open source
      License: GNU
      User mailing list or support: Yes
      URL: http://base.thep.lu.se

System requirements
      Operating system: Platform independent
      DB managing System: MySQL,PostgreSQL
      Main programming language: Java
      Client-side interface: web browser

Support
      Installation procedures: Yes
      Configuration documentation: Yes
      User documentation: Yes
      Regular maintenance: Yes

Miscellaneous
      GitHub availability: -
      Demo server availability: Yes

Requirements for data management in system biology
      Compliance to standards: MIAME
      Metadata model: MIAME-related
      Automation of data collection: batch import
      Upload to public repositories: ArrayExpress, GEO, CIBEX
      Extensibility: Java plugins / extentions
      Integration with other DMS: via java servlets



Please give me feedback by 30th June 2019 so that your feedback can be 
considered until publication.

Thanks in advance and best regards,
Philipp Pugliese
mailto:phi...@fa...

P.S.: hope you are the right contact person. If not, could you provide 
me the right contact person?