[base] Exception At File Upload

[Rachad El-B. <rel...@oc...>]

Hi,

1) I am getting an exception upon uploading a file to BASE, using the menu 'Files and directories -> Upload file...'.  The exception is:
BaseException
...at File.getNewFile(File.java:1573)
...at File.getUploadStream(File.java:1374)
...at net.sf.basedb.clients.web.servlet.Upload.doPost(Upload.java:207)
...at javax.servlet.http.HttpServlet.service(HttpServlet.java:637)
...at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
...at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
...at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
...at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
...at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
...at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
...at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859)
...at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602)
...at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
...at java.lang.Thread.run(Thread.java:679)

Caused by: java.io.FileNotFoundException: /usr/local/base2/files/2014-44/30-15
...at File.getNewFile(File.java:1555)
...at File.getUploadStream(File.java:1374)
...at net.sf.basedb.clients.web.servlet.Upload.doPost(Upload.java:207)
...at javax.servlet.http.HttpServlet.service(HttpServlet.java:637)
...at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
...at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
...at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
...at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
...at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
...at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
...at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859)
...at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602)
...at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
...at java.lang.Thread.run(Thread.java:679)


2) On a side note: I noticed that the pop-up menu for 'file upload' assumes that my BASE client browser is on the same file system as where BASE is installed, and that I have an account on that server (e.g. /home/rbadrawi), which is not the case. I am not sure how to change the default directory displayed in the pop-up file upload menu to reflect my current directory on my local machine. However, even after creating a matching directory on  the server (i.e. '/home/rbadrawi' in my case) the exception is not resolved.

I would appreciate any feedback on the topic.

Rachad Badrawi
Data Integration Manager,
Ontario Cancer Biomarker Network (OCBN).
rel...@oc...
Adjunct Lecturer,
Department of Pathology and Molecular Medicine,
Queen's University.
rac...@qu...