[basedb-cvs] basedb/src/assayImporter Makefile.am,NONE,1.1 assayImporter.cc,NONE,1.1

[<ku...@us...>]

Update of /cvsroot/basedb/basedb/src/assayImporter
In directory sc8-pr-cvs1:/tmp/cvs-serv4237/src/assayImporter

Added Files:
	Makefile.am assayImporter.cc 
Log Message:
Added autoconf/automake functionality. Supports c/c++ compilation.


--- NEW FILE: Makefile.am ---
# $Id: Makefile.am,v 1.1 2003/02/06 00:43:35 kurri Exp $

bin_PROGRAMS = assayImporter

assayImporter_SOURCES = assayImporter.cc
assayImporter_LDADD = -L@top_srcdir@/$(BASE_LIB_LOCATION) $(BASE_LIB)

INCLUDES = -I@top_srcdir@/$(BASE_INCLUDE_LOCATION)

--- NEW FILE: assayImporter.cc ---
// $Id: assayImporter.cc,v 1.1 2003/02/06 00:43:35 kurri Exp $
//
// BioArray Software Environment (BASE) - homepage http://base.thep.lu.se/
// Copyright (C) 2002 Lao Saal, Carl Troein, Johan Vallon-Christersson
//
// This file is part of BASE.
//
// BASE is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
//
// BASE is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program; if not, write to the Free Software
[...144 lines suppressed...]
	if(argc != 3)
	{
		cerr << "Syntax: assayImporter datafile channels "
			"<translationfile >tabfile\n";
		return 1;
	}
	ifstream datain(argv[1]);
	if(!datain)
	{
		cerr << "Unable to open input file '" << argv[1] << "'\n";
		return 1;
	}
	int channels = atoi(argv[2]);
	if(channels < 1 || channels > 100)
	{
		cerr << "Strange number of channels ("<<channels<<")\n";
		return 1;
	}
	return assayImport(datain, cin, channels) ? 0 : 1;
}