[basedb-cvs] basedb/plugins/src/clustering Makefile.am,1.1,1.2 Makefile.in,1.1,NONE

[<ku...@us...>]

Update of /cvsroot/basedb/basedb/plugins/src/clustering
In directory sc8-pr-cvs1:/tmp/cvs-serv4237/plugins/src/clustering

Modified Files:
	Makefile.am 
Removed Files:
	Makefile.in 
Log Message:
Added autoconf/automake functionality. Supports c/c++ compilation.


Index: Makefile.am
===================================================================
RCS file: /cvsroot/basedb/basedb/plugins/src/clustering/Makefile.am,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** Makefile.am	1 Feb 2003 12:52:50 -0000	1.1
--- Makefile.am	6 Feb 2003 00:43:34 -0000	1.2
***************
*** 1,36 ****
! ## Process this file with automake to produce Makefile.in
! ## 
! ## clustering directory under exec/source of BASE distribution. 
! ## $Id$
  
! AUTOMAKE_OPTIONS = foreign
  
! SUBDIRS = Cgraph
  
- bin_PROGRAMS = basehclust findsubtree drawmatrix drawgenetree drawassaytree 
  bin_SCRIPTS = clusteringscript
! basehclust_SOURCES = \
!         basefile.cc main.cc \
          AssayTree.cc BruteForce.cc Cluster.cc ClusterTree.cc CongaLine.cc \
          Error.cc FastPair.cc GeneTree.cc MultiConga.cc Neighbors.cc       \
          NoClusteringCP.cc Quadtree.cc SortedArray.cc StoreMergeReporter.cc
! findsubtree_SOURCES   = FindSubTree.cc ClusterTree.cc GeneTree.cc
! drawmatrix_SOURCES    = DrawMatrix.cc ClusterTree.cc GeneTree.cc AssayTree.cc basefile.cc
! drawgenetree_SOURCES  = DrawGeneTree.cc ClusterTree.cc GeneTree.cc basefile.cc
! drawassaytree_SOURCES = DrawAssayTree.cc ClusterTree.cc AssayTree.cc basefile.cc
! basehclust_LDADD      = $(CLUSTERING_LIBS)
! findsubtree_LDADD     = $(CLUSTERING_LIBS)
! drawmatrix_LDADD      = $(CLUSTERING_LIBS)
! drawgenetree_LDADD    = $(CLUSTERING_LIBS)
! drawassaytree_LDADD   = $(CLUSTERING_LIBS)
! INCLUDES = -I../ -I$(includedir)
! DEFS= -fno-exceptions
  
! ## files with non-standard names to be included in the distro
! EXTRA_DIST = \
!  Algorithms.h  AllClosestPairs.h AssayAnnotation.h AssayTree.h \
!  BaseClustering.h BruteForce.h ClusterTree.h ClosestPairs.h    \
!  Cluster.h clusteringscript CongaLine.h Distances.h Error.h    \
!  FastPair.h GeneTree.h MergeNode.h MergeReporter.h             \
!  MultiConga.h NoClusteringCP.h Neighbors.h PointSet.h          \
!  Quadtree.h SortedArray.h StoreMergeReporter.h Vector.h
--- 1,31 ----
! # $Id$
  
! SUBDIRS	= Cgraph
  
! bin_PROGRAMS = basehclust drawassaytree drawgenetree drawmatrix findsubtree
  
  bin_SCRIPTS = clusteringscript
! 
! basehclust_SOURCES    = \
!         main.cc \
          AssayTree.cc BruteForce.cc Cluster.cc ClusterTree.cc CongaLine.cc \
          Error.cc FastPair.cc GeneTree.cc MultiConga.cc Neighbors.cc       \
          NoClusteringCP.cc Quadtree.cc SortedArray.cc StoreMergeReporter.cc
! basehclust_LDADD      = -LCgraph/source -lcgraph \
! 			-L@top_srcdir@/$(BASE_LIB_LOCATION) $(BASE_LIB)
  
! drawassaytree_SOURCES = AssayTree.cc ClusterTree.cc DrawAssayTree.cc
! drawassaytree_LDADD   = -LCgraph/source -lcgraph \
! 			-L@top_srcdir@/$(BASE_LIB_LOCATION) $(BASE_LIB)
! 
! drawgenetree_SOURCES  = ClusterTree.cc DrawGeneTree.cc GeneTree.cc
! drawgenetree_LDADD    = -LCgraph/source -lcgraph
! 
! drawmatrix_SOURCES    = AssayTree.cc ClusterTree.cc DrawMatrix.cc GeneTree.cc
! drawmatrix_LDADD      = -LCgraph/source -lcgraph $(GD_LIB) $(PNG_LIB) \
! 			-L@top_srcdir@/$(BASE_LIB_LOCATION) $(BASE_LIB)
! 
! findsubtree_SOURCES   = ClusterTree.cc FindSubTree.cc GeneTree.cc
! findsubtree_LDADD     = -LCgraph/source -lcgraph
! 
! INCLUDES = -I@top_srcdir@/$(BASE_INCLUDE_LOCATION) -ICgraph/include

--- Makefile.in DELETED ---