Recent changes to Resources

Resources modified by Tomasz

Tomasz — Sat, 24 Aug 2013 05:17:35 -0000

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 * [NGSutils](http://ngsutils.org ) - toolkit for analyzing fastq and alignment files.

-* [Triagetools](http://sourceforge.net/projects/triagetools/ ) - toolkit for analyzing pre-alignment data
+* [Triagetools](http://sourceforge.net/projects/triagetools/ ) - toolkit for analyzing pre-alignment data 
   (*Disclaimer:* shared developers between projects)

-* [Locsmoc](http://sourceforge.net/projects/locsmoc/ ) - post-processing of genomic tracks.
-
+* [Locsmoc](http://sourceforge.net/projects/locsmoc/ ) - post-processing of genomic tracks. 
   (*Disclaimer:* shared developers between projects)

 #### Variant calling software ####

Resources modified by Tomasz

Tomasz — Thu, 15 Aug 2013 20:14:22 -0000

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-##Related Resources##
+## Resources ##
+
+Links to software and publications with related and/or interesting features. 
+
+
+#### Sequencing data analysis toolkits ####
+
+* [Picard](http://sourceforge.net/projects/picard/ ) - several tools for modifying and analyzing alignment files
+
+* [NGSutils](http://ngsutils.org ) - toolkit for analyzing fastq and alignment files.
+
+* [Triagetools](http://sourceforge.net/projects/triagetools/ ) - toolkit for analyzing pre-alignment data
+
+* [Locsmoc](http://sourceforge.net/projects/locsmoc/ ) - post-processing of genomic tracks.
+
+
+
+#### Variant calling software ####
+
+* [GATK](http://www.broadinstitute.org/gatk/ ) - variant calling and other features
+
+* [Varscan2](http://sourceforge.net/projects/varscan/ ) - variant calling and other features
+
+
+
+#### Publications ####
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+* [Comparing somatic mutation-callers: beyond Venn diagrams](http://www.biomedcentral.com/1471-2105/14/189 ) - a review of somatic variant calling software other than Bamformatics
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+
+

WikiPage Resources modified by Tomasz

Tomasz — Sun, 03 Mar 2013 22:05:06 -0000