https://sourceforge.net/p/bamformatics/wiki/Libraries/Recent changes to LibrariesenTue, 15 Jul 2014 20:05:12 -0000https://sourceforge.net/p/bamformatics/wiki/Libraries/<div class="markdown_content"><pre>--- v2 +++ v3 @@ -5,6 +5,7 @@ * [commons-compress 1.4](http://commons.apache.org/compress/ ) - library for IO with compressed files. Licenced under an [Apache Licence](http://www.apache.org/licenses/http://www.apache.org/licenses/ ) * [Fugue icons](http://p.yusukekamiyamane.com/http://p.yusukekamiyamane.com/ ) - Some icons by Yusuke Kamiyamane. Licensed under a [Creative Commons Attribution 3.0 License](http://creativecommons.org/licenses/by/3.0/http://creativecommons.org/licenses/by/3.0/ ) * [joptsimple 4.1](http://pholser.github.com/jopt-simple/ ) - command line option parsing. Licences under an [MIT Licence](http://opensource.org/licenses/mit-license.phphttp://opensource.org/licenses/mit-license.php ) +* [jSeqUtils](http://github.com/tkonopka/jSeqUtils ) - library with miscellaneous tools for analysis of sequence data in java. Licenced under an [Apache Licence](http://www.apache.org/licenses/http://www.apache.org/licenses/ ) * [sam-1.62](https://sourceforge.net/projects/picard/https://sourceforge.net/projects/picard/ ) - library for manipulating alignment files, part of Picard package. Licences under an [Apache Licence](http://www.apache.org/licenses/http://www.apache.org/licenses/ ) and an [MIT Licence](http://opensource.org/licenses/mit-license.phphttp://opensource.org/licenses/mit-license.php ) Devlopment under: </pre> </div>TomaszTue, 15 Jul 2014 20:05:12 -0000https://sourceforge.nete3a418198f02a86a320f25c703c1d3877be92a41https://sourceforge.net/p/bamformatics/wiki/Libraries/<div class="markdown_content"><pre>--- v1 +++ v2 @@ -1 +1,12 @@ ##Third-party Components## + +Bamformatics uses a number of third-party libraries and add-ons (in alphabetical order): + +* [commons-compress 1.4](http://commons.apache.org/compress/ ) - library for IO with compressed files. Licenced under an [Apache Licence](http://www.apache.org/licenses/http://www.apache.org/licenses/ ) +* [Fugue icons](http://p.yusukekamiyamane.com/http://p.yusukekamiyamane.com/ ) - Some icons by Yusuke Kamiyamane. Licensed under a [Creative Commons Attribution 3.0 License](http://creativecommons.org/licenses/by/3.0/http://creativecommons.org/licenses/by/3.0/ ) +* [joptsimple 4.1](http://pholser.github.com/jopt-simple/ ) - command line option parsing. Licences under an [MIT Licence](http://opensource.org/licenses/mit-license.phphttp://opensource.org/licenses/mit-license.php ) +* [sam-1.62](https://sourceforge.net/projects/picard/https://sourceforge.net/projects/picard/ ) - library for manipulating alignment files, part of Picard package. Licences under an [Apache Licence](http://www.apache.org/licenses/http://www.apache.org/licenses/ ) and an [MIT Licence](http://opensource.org/licenses/mit-license.phphttp://opensource.org/licenses/mit-license.php ) + +Devlopment under: + +* [Netbeans 7.x](http://netbeans.org/ ) - integrated development environment </pre> </div>TomaszTue, 05 Mar 2013 06:59:17 -0000https://sourceforge.netbe5a81cd02071ab39d898bd859b1c59cd3514d94https://sourceforge.net/p/bamformatics/wiki/Libraries/<div class="markdown_content"><h2 id="third-party-components">Third-party Components</h2></div>TomaszSun, 03 Mar 2013 22:05:45 -0000https://sourceforge.nete3afb3067284feb0fa26f4950d8584f023f403c0