Recent changes to Home

Home modified by Tomasz

Tomasz — Thu, 15 Aug 2013 20:25:26 -0000

--- v5
+++ v6
@@ -7,34 +7,34 @@

 The constituents of the Bamformatics toolkit can be split into the following groups:

-* [Variants] – tools associated with variant calling
-* [Tracks] – tools associated with genomic tracks derived from alignments
-* [Other] – miscellaneous tools, e.g. statistics
+* [Variants] – tools associated with variant calling and filtering,
+* [Tracks] – tools associated with genomic tracks derived from alignments,
+* [Other] – miscellaneous tools, e.g. statistics.

-Some of the functionality described in the above pages overlaps with that of other programs (see page on [Resources]). However, the Bamformatics toolkit has a number of interesting and distinguishing [Features].
+Some of the functionality described in the above pages overlaps with that of other programs (see  [Resources]). However, the Bamformatics toolkit has a number of interesting and distinguishing [Features].

 ####GUI####

-*Note:* The GUI is still a rather experimental component of the project.
+The graphical user interface is designed as a file-manager. This should make its general look-and-feel familiar and at the same time provide access to advanced features. Its functionality is described under the following headings:

-The graphical user interface is designed as a file-manager. This should make its general look-and-feel familiar while at the same time providing access to features facilitating scientific discovery. Its functionality is described under the following headings:
-
-* [GUI] – general information about the GUI
-* [GUIvariants] – access to the toolkit's programs related to variant calling
+* [GUI] – general information about the GUI,
+* [GUIvariants] – access to the toolkit's programs related to variant calling and filtering,
 * [GUIscripts] – handling of generic scripts and complete pipelines.

+*Note:* The GUI is an experimental component of the project.

 ####Resources####

 Some additional relevant information

-* [Resources] – links to related and/or complementary software of HTS data analysis.
-* [Libraries] – third-party libraries and components used within this project
-* [Versions] – history of updates
+* [Resources] – links to related and/or complementary software of HTS data analysis,
+* [Libraries] – third-party libraries and components used within this project,
+* [Versions] – history of updates.

-

-

+####Download####
+
 [[download_button]]

+Please send comments or bug reports to 'bamformatics at gmail dot com'.

WikiPage Home modified by Tomasz

Tomasz — Wed, 06 Mar 2013 21:35:33 -0000

--- v4
+++ v5
@@ -21,8 +21,8 @@
 The graphical user interface is designed as a file-manager. This should make its general look-and-feel familiar while at the same time providing access to features facilitating scientific discovery. Its functionality is described under the following headings:

 * [GUI] – general information about the GUI
-* [Variants] – access to the toolkit's programs related to variant calling
-* [Scripts] – handling of generic scripts and complete pipelines.
+* [GUIvariants] – access to the toolkit's programs related to variant calling
+* [GUIscripts] – handling of generic scripts and complete pipelines.

 ####Resources####

WikiPage Home modified by Tomasz

Tomasz — Sun, 03 Mar 2013 22:08:52 -0000

--- v3
+++ v4
@@ -11,7 +11,7 @@
 * [Tracks] – tools associated with genomic tracks derived from alignments
 * [Other] – miscellaneous tools, e.g. statistics

-Some of the functionality described in the above pages overlaps with that of other programs (see page on [Resources]). However, the Bamformatics toolkit has a number of interesting and distinguishing [features].
+Some of the functionality described in the above pages overlaps with that of other programs (see page on [Resources]). However, the Bamformatics toolkit has a number of interesting and distinguishing [Features].

 ####GUI####
@@ -20,7 +20,7 @@

 The graphical user interface is designed as a file-manager. This should make its general look-and-feel familiar while at the same time providing access to features facilitating scientific discovery. Its functionality is described under the following headings:

-* [Introduction] – general information about the GUI
+* [GUI] – general information about the GUI
 * [Variants] – access to the toolkit's programs related to variant calling
 * [Scripts] – handling of generic scripts and complete pipelines.

WikiPage Home modified by Tomasz

Tomasz — Sun, 03 Mar 2013 21:34:17 -0000

--- v2
+++ v3
@@ -34,5 +34,7 @@
 * [Versions] – history of updates

+

+

 [[download_button]]

WikiPage Home modified by Tomasz

Tomasz — Sun, 03 Mar 2013 21:33:26 -0000

--- v1
+++ v2
@@ -1,8 +1,38 @@
-Welcome to your wiki!
+##Bamformatics##

-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
+The Bamformatics project aims to play two distinct roles. First, it provides a coherent toolkit for analysis of high-throughput sequencing data in post-alignment stages. Second, the project also implements a graphical user interface to facilitate use of the toolkit as well as execution of general pipelines and workflows.

-The wiki uses [Markdown](/p/bamformatics/wiki/markdown_syntax/) syntax.

-[[project_admins]]
+####Toolkit####
+
+The constituents of the Bamformatics toolkit can be split into the following groups:
+
+* [Variants] – tools associated with variant calling
+* [Tracks] – tools associated with genomic tracks derived from alignments
+* [Other] – miscellaneous tools, e.g. statistics
+
+Some of the functionality described in the above pages overlaps with that of other programs (see page on [Resources]). However, the Bamformatics toolkit has a number of interesting and distinguishing [features].
+
+
+####GUI####
+
+*Note:* The GUI is still a rather experimental component of the project.
+
+The graphical user interface is designed as a file-manager. This should make its general look-and-feel familiar while at the same time providing access to features facilitating scientific discovery. Its functionality is described under the following headings:
+
+* [Introduction] – general information about the GUI
+* [Variants] – access to the toolkit's programs related to variant calling
+* [Scripts] – handling of generic scripts and complete pipelines.
+
+
+####Resources####
+
+Some additional relevant information
+
+* [Resources] – links to related and/or complementary software of HTS data analysis.
+* [Libraries] – third-party libraries and components used within this project
+* [Versions] – history of updates
+
+
 [[download_button]]
+

WikiPage Home modified by Tomasz

Tomasz — Tue, 18 Dec 2012 15:19:02 -0000

Welcome to your wiki!

This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

The wiki uses Markdown syntax.

Tomasz