If it says: "No programmer has been set for the project", then that is what it is.
Next you say that there two AVRDude items. You probably mean that "Programmer configuration" has two choices. But you don't say which one you selected. I'm assuming the second is selected. But then it does not match with the message "No programmer has been set for the project". Either you have one selected or you get that "No programmer..." message.
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