Would integration with a queuing system such as SGE be possible? Just the ability to submit a job via qsub from Avogadro would be fantastic.

At the moment, this is a desire. However, I suspect we will try to interest people in a separate project from Avogadro. (After all, there are multiple queue systems: SGE, Torque, LGF, PBS, etc.)

Cheers,
-Geoff