Nobody/Anonymous - 2004-05-11

Hello,

I am having problems trying to start Pick70_script1_contig
with gfclient option. This is what I did:

1) started gfServer:
cd NCBI_hum_gen_040421
../BLAT/gfServer start localhost 6666 hs_chr*.nib

2) tested that gfClient works:
gfClient localhost 6666 /home/darked/NCBI_hum_gen_040421/ test_input out_test_input.psl
#works fine

3) created  .gfServer_Information file with line:

localhost 6666 /home/darked/NCBI_hum_gen_040421/

4) run Pick70_script1_contig:

./Pick70_script1_contig 17.fa.fragments /home/darked/NCBI_hum_gen_040421/hs_chr*.fa 60 gfclient

Getting "USAGE: " etc. message.

I will greatly appreciate your help

Darek Kedra
Burnham Inst, CA, US