<?xml version="1.0" encoding="utf-8"?>
<rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Recent changes to Home</title><link>https://sourceforge.net/p/arden/wiki/Home/</link><description>Recent changes to Home</description><atom:link href="https://sourceforge.net/p/arden/wiki/Home/feed" rel="self"/><language>en</language><lastBuildDate>Fri, 08 Mar 2013 16:11:25 -0000</lastBuildDate><atom:link href="https://sourceforge.net/p/arden/wiki/Home/feed" rel="self" type="application/rss+xml"/><item><title>WikiPage Home modified by Giese, Sven</title><link>https://sourceforge.net/p/arden/wiki/Home/</link><description>&lt;div class="markdown_content"&gt;&lt;pre&gt;--- v8
+++ v9
@@ -2,7 +2,8 @@

 &lt;h1&gt;Introduction&lt;/h1&gt;

-TBD
+We introduce ARDEN (&lt;b&gt;A&lt;/b&gt;rtificial &lt;b&gt;R&lt;/b&gt;eference &lt;b&gt;D&lt;/b&gt;riven &lt;b&gt;E&lt;/b&gt;stimation of false positives in &lt;b&gt;N&lt;/b&gt;GS data), a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation. 
+

&lt;/pre&gt;
&lt;/div&gt;</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Giese, Sven</dc:creator><pubDate>Fri, 08 Mar 2013 16:11:25 -0000</pubDate><guid>https://sourceforge.net44506cc16004374d855798d9f3b425a98a8c2c90</guid></item><item><title>WikiPage Home modified by Giese, Sven</title><link>https://sourceforge.net/p/arden/wiki/Home/</link><description>&lt;div class="markdown_content"&gt;&lt;pre&gt;--- v7
+++ v8
@@ -1,4 +1,4 @@
-Welcome to your &lt;b&gt;ARDEN&lt;/b&gt;, a method for Artificial Reference Driven Estimation of false positives in NGS.
+Welcome to &lt;b&gt;ARDEN&lt;/b&gt;, a method for Artificial Reference Driven Estimation of false positives in NGS.

 &lt;h1&gt;Introduction&lt;/h1&gt;

&lt;/pre&gt;
&lt;/div&gt;</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Giese, Sven</dc:creator><pubDate>Tue, 05 Mar 2013 13:04:03 -0000</pubDate><guid>https://sourceforge.net3d4d4d1e0b3a5cfee67cc6fc5a452144ca69bb14</guid></item><item><title>WikiPage Home modified by Giese, Sven</title><link>https://sourceforge.net/p/arden/wiki/Home/</link><description>&lt;div class="markdown_content"&gt;&lt;pre&gt;--- v6
+++ v7
@@ -10,7 +10,7 @@
 &lt;h1&gt;Useful links&lt;/h1&gt;

 \[1] &lt;a href="https://sourceforge.net/p/arden/wiki/FAQ"&gt;FAQ &lt;/a&gt;
-\[2] &lt;a href="https://sourceforge.net/p/arden/wiki/DP"&gt;Dependencies&lt;/a&gt;
+\[2] &lt;a href="https://sourceforge.net/p/arden/wiki/DP"&gt;Installation &amp; Dependencies&lt;/a&gt;
 \[3] &lt;a href="https://sourceforge.net/p/arden/wiki/GS"&gt;Getting started&lt;/a&gt;

&lt;/pre&gt;
&lt;/div&gt;</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Giese, Sven</dc:creator><pubDate>Mon, 04 Mar 2013 12:13:09 -0000</pubDate><guid>https://sourceforge.net62730b2ab81aaac21841acb4bffe91b930d64458</guid></item><item><title>WikiPage Home modified by Giese, Sven</title><link>https://sourceforge.net/p/arden/wiki/Home/</link><description>&lt;div class="markdown_content"&gt;&lt;pre&gt;--- v5
+++ v6
@@ -2,9 +2,9 @@

 &lt;h1&gt;Introduction&lt;/h1&gt;

-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
+TBD

-The wiki uses [Markdown](/p/arden/wiki/markdown_syntax/) syntax.
+

 &lt;h1&gt;Useful links&lt;/h1&gt;
&lt;/pre&gt;
&lt;/div&gt;</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Giese, Sven</dc:creator><pubDate>Mon, 04 Mar 2013 12:12:10 -0000</pubDate><guid>https://sourceforge.net388ae5623b31adf0dbd6801a1f90489d1453eef6</guid></item><item><title>WikiPage Home modified by Giese, Sven</title><link>https://sourceforge.net/p/arden/wiki/Home/</link><description>&lt;div class="markdown_content"&gt;&lt;pre&gt;--- v4
+++ v5
@@ -10,8 +10,9 @@
 &lt;h1&gt;Useful links&lt;/h1&gt;

 \[1] &lt;a href="https://sourceforge.net/p/arden/wiki/FAQ"&gt;FAQ &lt;/a&gt;
-\[2] &lt;a href="https://sourceforge.net/p/arden/wiki/GS"&gt;Getting started&lt;/a&gt;
+\[2] &lt;a href="https://sourceforge.net/p/arden/wiki/DP"&gt;Dependencies&lt;/a&gt;
+\[3] &lt;a href="https://sourceforge.net/p/arden/wiki/GS"&gt;Getting started&lt;/a&gt;

-
+ 
 [[project_admins]]
 [[download_button]]
&lt;/pre&gt;
&lt;/div&gt;</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Giese, Sven</dc:creator><pubDate>Mon, 04 Mar 2013 12:07:40 -0000</pubDate><guid>https://sourceforge.netec4a61adc86c34f0d107501e4581cea73264f6bd</guid></item><item><title>WikiPage Home modified by Giese, Sven</title><link>https://sourceforge.net/p/arden/wiki/Home/</link><description>&lt;div class="markdown_content"&gt;&lt;pre&gt;--- v3
+++ v4
@@ -9,8 +9,8 @@

 &lt;h1&gt;Useful links&lt;/h1&gt;

-[1] &lt;a href="https://sourceforge.net/p/arden/wiki/FAQ"&gt;FAQ &lt;/a&gt;
-[2] &lt;a href="https://sourceforge.net/p/arden/wiki/GS"&gt;Getting started&lt;/a&gt;
+\[1] &lt;a href="https://sourceforge.net/p/arden/wiki/FAQ"&gt;FAQ &lt;/a&gt;
+\[2] &lt;a href="https://sourceforge.net/p/arden/wiki/GS"&gt;Getting started&lt;/a&gt;

 [[project_admins]]
&lt;/pre&gt;
&lt;/div&gt;</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Giese, Sven</dc:creator><pubDate>Mon, 04 Mar 2013 12:05:15 -0000</pubDate><guid>https://sourceforge.netc388b6bcd989062ebe5fcfc7ec35d9d1de3c7537</guid></item><item><title>WikiPage Home modified by Giese, Sven</title><link>https://sourceforge.net/p/arden/wiki/Home/</link><description>&lt;div class="markdown_content"&gt;&lt;pre&gt;--- v2
+++ v3
@@ -1,14 +1,16 @@
-Welcome to your wiki!
+Welcome to your &lt;b&gt;ARDEN&lt;/b&gt;, a method for Artificial Reference Driven Estimation of false positives in NGS.
+
+&lt;h1&gt;Introduction&lt;/h1&gt;

 This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

 The wiki uses [Markdown](/p/arden/wiki/markdown_syntax/) syntax.

+&lt;h1&gt;Useful links&lt;/h1&gt;

-&lt;b&gt;USEFUL LINKS&lt;/b&gt;:
 [1] &lt;a href="https://sourceforge.net/p/arden/wiki/FAQ"&gt;FAQ &lt;/a&gt;
-[2] &lt;a href="https://sourceforge.net/p/arden/wiki/FAQ"&gt;dummy&lt;/a&gt;
+[2] &lt;a href="https://sourceforge.net/p/arden/wiki/GS"&gt;Getting started&lt;/a&gt;

 [[project_admins]]
&lt;/pre&gt;
&lt;/div&gt;</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Giese, Sven</dc:creator><pubDate>Mon, 04 Mar 2013 11:37:23 -0000</pubDate><guid>https://sourceforge.net8e3146e8b35b17d15136a02f97ae383d3c258c28</guid></item><item><title>WikiPage Home modified by Giese, Sven</title><link>https://sourceforge.net/p/arden/wiki/Home/</link><description>&lt;div class="markdown_content"&gt;&lt;pre&gt;--- v1
+++ v2
@@ -4,5 +4,12 @@

 The wiki uses [Markdown](/p/arden/wiki/markdown_syntax/) syntax.

+
+
+&lt;b&gt;USEFUL LINKS&lt;/b&gt;:
+[1] &lt;a href="https://sourceforge.net/p/arden/wiki/FAQ"&gt;FAQ &lt;/a&gt;
+[2] &lt;a href="https://sourceforge.net/p/arden/wiki/FAQ"&gt;dummy&lt;/a&gt;
+
+
 [[project_admins]]
 [[download_button]]
&lt;/pre&gt;
&lt;/div&gt;</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Giese, Sven</dc:creator><pubDate>Mon, 04 Mar 2013 11:24:29 -0000</pubDate><guid>https://sourceforge.net53a7fc6830cef4220723957fda68aa44b469c5ff</guid></item><item><title>WikiPage Home modified by Giese, Sven</title><link>https://sourceforge.net/p/arden/wiki/Home/</link><description>&lt;div class="markdown_content"&gt;&lt;p&gt;Welcome to your wiki!&lt;/p&gt;
&lt;p&gt;This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: &lt;span&gt;[SamplePage]&lt;/span&gt;.&lt;/p&gt;
&lt;p&gt;The wiki uses &lt;a class="" href="/p/arden/wiki/markdown_syntax/"&gt;Markdown&lt;/a&gt; syntax.&lt;/p&gt;
&lt;p&gt;&lt;a href="/u/gieses/"&gt;Giese, Sven&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;
&lt;span class="download-button-5134775e7929e51823bef271" style="margin-bottom: 1em; display: block;"&gt;&lt;/span&gt;&lt;/p&gt;&lt;/div&gt;</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Giese, Sven</dc:creator><pubDate>Mon, 04 Mar 2013 10:28:47 -0000</pubDate><guid>https://sourceforge.net47d8bdaba5142e65c72a9bf515b5d67ff0d8c36b</guid></item></channel></rss>