ReadmeStatFileFormat
If the next two lines are not commented, the old text/matrix format it is and the lines are obligatory
The statistics has been gathered for 1000000 points, from point #28
2587 best patternsets with reliabilities between 0.000105955 and 6.01653e-007 were kept
The header is the first document. Patternsets, then patterns. Each patternset is a document with patternset: tag and each pattern is with pattern: tag
gathered: 1000000
from: 28
kept-best-patterntsets: 2587
reliabilities-band:
- 0.000105955
- 6.01653e-007
this tag shows the sequence of loci
loci:
- Ex_locus_1
- Ex_locus_2
- Ex_locus_3
- Ex_locus_4
- Ex_locus_5
- Ex_locus_6
- Ex_locus_7
- Ex_locus_8
- Ex_locus_9
- Ex_locus_10
dictionary:
Ex_locus_1:
- A
- G
Ex_locus_2:
- C
- T
Ex_locus_3:
- C
- T
Ex_locus_4:
- A
- T
Ex_locus_5:
- T
- C
Ex_locus_6:
- 3_loc_6
- 4_loc_6
- 2_loc_6
Ex_locus_7:
- T
- G
Ex_locus_8:
- C
- G
Ex_locus_9:
- I
- D
Ex_locus_10:
- G
- A
...
manual explanation (added after APsampler)
Locus*Allele; is a locus carrirship description
Locus*Allele,Other_Allele; is a locus genotype description
; is inside-pattern delimiter, can be omited after the last locus
patterns are lines, an endline is a pattern end
patternset:
- Ex_locus_2T; Ex_locus_4T
- Ex_locus_5*C,T
times: 114
predisposing:
- 5.508e-009
- 6.834e-011
protective:
- 0.002888
- 0.03669
reliability: 0.000105955
...
patternset:
- Ex_locus_2T; Ex_locus_4T
- Ex_locus_5C,T; Ex_locus_8C
times: 6 times
predisposing:
- 5.508e-009
- 6.834e-011
protective:
- 0.002888
- 0.03669
reliability: 0.000105955
...
patternset:
- Ex_locus_2T; Ex_locus_4T; Ex_locus_8C
- Ex_locus_5C,T
times: 1
predisposing:
- 5.508e-009
- 6.834e-011
protective:
- 0.002888
- 0.03669
reliability: 0.000105955
...
patternset:
- Ex_locus_2T; Ex_locus_4T; Ex_locus_7T
- Ex_locus_5C,T; Ex_locus_8*C
times:8
predisposing:
- 5.508e-009
- 6.834e-011
protective:
- 0.002888
- 0.03669
reliability: 0.000105955
...
here, I cut the example and lot of patternsets are hidden
pattern: Ex_locus_5*C
times: 594347
times_predisposing: 37
times_protective: 593948
max_reliability_predisposing: 0.0005
max_reliability_protective: 0.0222242
...
pattern: Ex_locus_4*T
times: 483493
times_predisposing: 239
times_protective: 483243
max_reliability_predisposing: 0.0005
max_reliability_protective: 0.00195383
...
pattern: Ex_locus_6*2_loc_6
times: 199156
times_predisposing: 267
times_protective: 198812
max_reliability_predisposing: 0.0005
max_reliability_protective: 0.00565737
...
Ex_locus_8*C
times: 160171
times_predisposing: 0
times_protective: 0
max_reliability_predisposing: 0.0005
max_reliability_protective: 0.0005
...