Recent changes to regex6.py

WikiPage regex6.py modified by Sarah Bourlat

Sarah Bourlat — Tue, 24 Jul 2012 10:37:33 -0000

--- v3
+++ v4
@@ -2,4 +2,20 @@
 
 Blast results parsing: 
 
-This script uses regular expressions to parse the results of the standalone BLAST in text format. By using regular expressions we extract the sequence identifier, the BLAST accession number and the species name, as a comma separated file which was then used to load these data to the BioSQL database.
+This script uses regular expressions to parse BLAST results in text format. By using regular expressions we extract the sequence identifier, the BLAST accession number and the species name, as a comma separated file which can be used to load these data to the BioSQL database.
+
+Here is an example of a file before parsing:
+
+gb|AEC74743.1|  cytochrome oxidase subunit 1 [Hymenoptera sp. BOL...   226    2e-57
+gb|ABU51883.1|  cytochrome oxidase subunit I [Virilastacus rucapi...   226    2e-57
+gb|AEC59043.1|  cytochrome oxidase subunit 1 [Araneae sp. BOLD:AA...   226    3e-57
+gb|AEC74632.1|  cytochrome oxidase subunit 1 [Hymenoptera sp. BOL...   226    3e-57
+
+And after parsing:
+
+1 , AEC74743.1 , Hymenoptera sp. 
+1 , ABU51883.1 , Virilastacus rucapihuelensis
+1 , AEC59043.1 , Araneae sp. 
+1 , AEC74632.1 , Hymenoptera sp. 
+
+

WikiPage regex6.py modified by Sarah Bourlat

Sarah Bourlat — Mon, 23 Jul 2012 13:57:17 -0000

--- v2
+++ v3
@@ -1,4 +1,4 @@
-[regex6.py]()
+[regex6.py](https://sourceforge.net/p/appbiokth2011/code/ci/78249081e205a0142525f036bb9fcced0690eb6e/tree/regex6.py)
 
 Blast results parsing:

WikiPage regex6.py modified by Sarah Bourlat

Sarah Bourlat — Mon, 23 Jul 2012 13:56:21 -0000

--- v1
+++ v2
@@ -1,3 +1,5 @@
-regex6.py (Blast results parsing): 
+[regex6.py]()
+
+Blast results parsing: 
 
 This script uses regular expressions to parse the results of the standalone BLAST in text format. By using regular expressions we extract the sequence identifier, the BLAST accession number and the species name, as a comma separated file which was then used to load these data to the BioSQL database.

WikiPage regex6.py modified by SBMV

SBMV — Fri, 20 Jul 2012 08:46:27 -0000

regex6.py (Blast results parsing): This script uses regular expressions to parse the results of the standalone BLAST in text format. By using regular expressions we extract the sequence identifier, the BLAST accession number and the species name, as a comma separated file which was then used to load these data to the BioSQL database.