apLCMS Wiki
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The package generates a feature table from a batch of LC/MS spectra in .cdf format.
Instructions: http://www.sph.emory.edu/apLCMS/
References
Bioinformatics. 25(15):1930-36.
BMC Bioinformatics. 11:559.
J. Proteome Res. 12(3):1419-27.
Bioinformatics. 30(20): 2941-2948.