apelon-dts-devel

[Apelon-dts-devel] Setting up Apelon as a service on Debian

[judy w. <jud...@gm...>]

hello

I am trying to set up apelon as a service on debian

My init script does not run automatically and i wonder if anyone is
kind enough to share their script

The install apelon as a service only works for redhat and fedora systems

Thank you

-- 
Judy

Re: [Apelon-dts-devel] building apelon

[Abhay S. <as...@ap...>]

Jay,

You can get DTS 3.5.2.203 code from the subversion url -
https://apelon-dts.svn.sourceforge.net/svnroot/apelon-dts/maven/dts/trunk

Abhay

From: Jay Boyer [mailto:boyer@SNHDMAIL.ORG]
Sent: Friday, June 22, 2012 1:32 PM
To: 'ape...@li...'
Subject: [Apelon-dts-devel] building apelon

I work at Southern Nevada Health District and we are using Apelon DTS.  We want to  modify the 3.5.2.203 source to allow us to use PostgreSQL.  Can someone please let me know how to checkout and build the 3.5.2.203 branch?

Thanks,

Jay

[Apelon-dts-devel] building apelon

[Jay B. <boyer@SNHDMAIL.ORG>]

I work at Southern Nevada Health District and we are using Apelon DTS.  We want to  modify the 3.5.2.203 source to allow us to use PostgreSQL.  Can someone please let me know how to checkout and build the 3.5.2.203 branch?

Thanks,

Jay

[Apelon-dts-devel] building apelon

[Jay B. <boyer@SNHDMAIL.ORG>]

I'm work at Southern Nevada Health District and we are using Apelon DTS.  We want to  modify the 3.5.2.203 source to allow us to use PostgreSQL.  Can someone please let me know how to checkout and build the 3.5.2.203 branch?

Thanks,

Jay

Re: [Apelon-dts-devel] Unable to classify ICD-9 Extension Namespace

[H. Q. S. <hst...@re...>]

We are in the process of licensing the content, but the only data I have right now is the sample data one of my colleagues downloaded and it doesn't have the classifier graph.

Has the sample content been updated to include this?  If so, I can have him download it again.  If not, is there any other way I can get the classifier graph for ICD-9?  I don't think we'll have our license in place in time for me to complete this work and get the proof-of-concept finished, so I'm trying to find another option that will be a little quicker :-)

 
----- Original Message -----
From: "Abhay Sinha" <as...@ap...>
To: "H. Quinn Stevenson" <hst...@re...>, "DTS Development" <ape...@li...>
Sent: Friday, March 21, 2008 9:16:42 AM GMT -07:00 US/Canada Mountain
Subject: RE: [Apelon-dts-devel] Unable to classify ICD-9 Extension Namespace

You need to import the classifier graph for ICD-9 using Subscription
Import Wizard. If you don't have this file, you can contact your Apelon
contact.

Abhay

-----Original Message-----
From: ape...@li...
[mailto:ape...@li...] On Behalf Of H.
Quinn Stevenson
Sent: Thursday, March 20, 2008 6:21 PM
To: DTS Development
Subject: [Apelon-dts-devel] Unable to classify ICD-9 Extension Namespace

I'm working with the new 3.4.1 download and trying to complete some
proof-of-concept work, but I'm running into some issues.

I can create extension namespaces for SNOMED and run the classifier
against them and everything works just great.

However, I need to create an extension namespace for the ICD-9 namespace
(I'm working with the sample download namespace), and I hit a couple of
issues.  First, I couldn't create/deploy a classifier for this
namespace.  I changed the config of the web.xml in the snomedct.war
classifier to what I thought should work for ICD9, but I get the
following error in the log when I try to deploy it:

SEVERE: No classifier was found in the database for namespace: 10

I looked in the database, and sure enough, there isn't a row in the
DTS_CLASSIFIER_GRAPH table for the ICD-9 namespace.

Is there any way I can generate the element for the row in this table?
Can I get one somewhere?

I need to work this out pretty quick to complete my proof-of-concept.

Thank You in advance
Quinn

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Re: [Apelon-dts-devel] Unable to classify ICD-9 Extension Namespace

[Abhay S. <as...@ap...>]

You need to import the classifier graph for ICD-9 using Subscription
Import Wizard. If you don't have this file, you can contact your Apelon
contact.

Abhay

-----Original Message-----
From: ape...@li...
[mailto:ape...@li...] On Behalf Of H.
Quinn Stevenson
Sent: Thursday, March 20, 2008 6:21 PM
To: DTS Development
Subject: [Apelon-dts-devel] Unable to classify ICD-9 Extension Namespace

I'm working with the new 3.4.1 download and trying to complete some
proof-of-concept work, but I'm running into some issues.

I can create extension namespaces for SNOMED and run the classifier
against them and everything works just great.

However, I need to create an extension namespace for the ICD-9 namespace
(I'm working with the sample download namespace), and I hit a couple of
issues.  First, I couldn't create/deploy a classifier for this
namespace.  I changed the config of the web.xml in the snomedct.war
classifier to what I thought should work for ICD9, but I get the
following error in the log when I try to deploy it:

SEVERE: No classifier was found in the database for namespace: 10

I looked in the database, and sure enough, there isn't a row in the
DTS_CLASSIFIER_GRAPH table for the ICD-9 namespace.

Is there any way I can generate the element for the row in this table?
Can I get one somewhere?

I need to work this out pretty quick to complete my proof-of-concept.

Thank You in advance
Quinn

------------------------------------------------------------------------
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This SF.net email is sponsored by: Microsoft
Defy all challenges. Microsoft(R) Visual Studio 2008.
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_______________________________________________
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Ape...@li...
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[Apelon-dts-devel] Unable to classify ICD-9 Extension Namespace

[H. Q. S. <hst...@re...>]

I'm working with the new 3.4.1 download and trying to complete some proof-of-concept work, but I'm running into some issues.

I can create extension namespaces for SNOMED and run the classifier against them and everything works just great.

However, I need to create an extension namespace for the ICD-9 namespace (I'm working with the sample download namespace), and I hit a couple of issues.  First, I couldn't create/deploy a classifier for this namespace.  I changed the config of the web.xml in the snomedct.war classifier to what I thought should work for ICD9, but I get the following error in the log when I try to deploy it:

SEVERE: No classifier was found in the database for namespace: 10

I looked in the database, and sure enough, there isn't a row in the DTS_CLASSIFIER_GRAPH table for the ICD-9 namespace.

Is there any way I can generate the element for the row in this table?  Can I get one somewhere?

I need to work this out pretty quick to complete my proof-of-concept.

Thank You in advance
Quinn

[Apelon-dts-devel] Apelon DTS 3.4.1 released

[Abhay S. <as...@ap...>]

Apelon DTS 3.4.1 release is now available for download. 

This is the first general availability release of Open Source Apelon
DTS.

 
Apelon DTS 3.4.1 for Linux is also available for download. 
Apelon DTS.Net Client for .Net is also available for download. 
 
All Documents for this release are available at
http://apelon-dts.wiki.sourceforge.net/DTS+3.4.1+Documents 
 
Sample Content for Apelon DTS is available from Apelon Support site at
http://support.apelon.com/apelonreg.htm . 

Free registration is required for download.  
Sample Content includes ICD-9-CM, SNOMED CT and LOINC.

 

Abhay Sinha

Re: [Apelon-dts-devel] Plans for DTS Server

[Abhay S. <as...@ap...>]

Quinn,

Your suggestions are very good. I appreciate you taking time to
elaborate each point very clearly. I will go over each item with you
later. I am trying to get the dts release out right now.

OntylogClassQuery is designed for static data. Ontylog Extension
namespace can be edited in DTS and the Concept hierarchy can change with
each classification. Updating direct_sups_plus with each classification
will slow down the classification request considerably. I think this was
the reason for not doing it.

Direct_sups_plus is populated by a separate utility. I am also not
familiar with it, so I will also need to do some brainstorming. 

Thanks,
Abhay

-----Original Message-----
From: H. Quinn Stevenson [mailto:hst...@re...] 
Sent: Monday, February 11, 2008 10:54 AM
To: Abhay Sinha
Cc: Jack Bowie; Andy Wells; Tony Weida
Subject: Re: [Apelon-dts-devel] Plans for DTS Server

Abhay -

Thank you for the information - I was hoping the feature for the
OntylogClassQuery would make it into this release, since the project
I've been tasked with requires this type of functionality.  What I've
done right now is to use the NavQuery to traverse the tree, and then
grab the properties for all the concepts once I reach the bottom of the
tree.  This is a pretty slow process, but at least I can accomplish what
we need for now.  I looked at the OntylogClassQuery to see if I could
make it work, but it looks like the problem lies in the code that adds
new concepts to the extension namespace - I'm guessing it needs to
update the direct_sups_plus table somehow, but I'm not comfortable
enough with the codebase at this point to try this one on my own :-).
If you can point me in the right direction, I'd be happy to give it a
shot.

I spoke with our Architect this morning, and he said he has had a few
discussions with someone at Apelon (I didn't catch the name) about how
we can work together on this.  He said someone is coming out to meet
with us early in March to discuss this further, but in the meantime I
need to keep pressing forward.

As you probably figured out, most of my questions centered around how to
get a consistent codebase that we can all work with and avoid stepping
on each others toes.  I've worked with a few opensource projects before,
and the ones that were the easiest to work with had well defined coding
standards and a "open" build infrastructure.  From looking at the code
so far, it looks like you are moving in that direction, but haven't
quite got there yet.  Maybe we could collaborate on getting the basic
infrastructure in place to make this work for both of us.

For Example:
- Coding style:  If we could use a code formatter that worked in
multiple IDE's (JIndent, Jalopy, etc), we could export the configuration
and make it available on the sourceforge site.  Also, it would be really
nice to setup some checkstyle rules to validate the standards are being
followed.  We tried avoiding this step on an internal project I worked
on in a past life, and after much pain we finally went back and did it
:-).

- Build Environment:  This need to be cleaned up - the ant buildfiles
don't follow a consistent nameing conventions, so it is pretty labor
intensive to figure out what they all are.  It wouldn't be quite as hard
if the app didn't use so many xml files of it's own (a simple find
command would work), but with all the xml files around, it made it a
little hard.  I wound up giving up on this part and just creating
Netbeans projects for each component - it turned out to be a lot
simpler.  A build environment based on ant (or better yet maven) would
be really nice - the IDE's I've worked with (Eclipse and Netbeans) can
understand this type of project, so people are not tied to a specific
IDE.

- Version Control policies:  I don't know where you guys stand on this,
but I'm a firm believer in "checkin often".  When I've worked on
projects where folks don't checkin changes as they complete them, we
would up with lots of merges to deal with.

- General Housekeeping:  I didn't know what else to call this.  I think
it would be very beneficial if a pass was made through the projects just
to clean stuff up.  It is very valuable (at least to me) to be able to
compile code with all the warnings turned on - it helps me find stupid
mistakes early (I lean on the compiler a lot for this stuff).  There are
a bunch of warning generated by the current code - some are easy to fix
(like the use of the deprecated Category class in log4j) and others are
not (the use of some deprecated JAXB interfaces/classes).  Also, once
the coding style is defined, it is really easy to run the formatter
against the entire codebase (at least is is for JIndent and Jalopy) -
that at least gives all the code a consistent look.

Other housekeeping items would include moving the unit tests that are in
"main" methods to junit style tests getting rid of the circular
dependency in the projects (core depends on apelonserver at compile
time, but apelonserver requires core at runtime - this really give
Netbeans heartburn).

Theres a bunch of other stuff I've been trying to figure out how to get
going (continuous integration, , removing some dependencies in the tests
<like figure out how to run the tests without a full Oracle instance>
and how to refactor the code to make it more JEE friendly.

I've probabaly lost your attention by now, so I'll stop, but I would
really like to have some discussions about these (and a bunch more)
items.

Any thoughts on how we can proceed?

Thanks Again
Quinn


----- Original Message -----
From: "Abhay Sinha" <as...@ap...>
To: "H. Quinn Stevenson" <hst...@re...>
Cc: "Jack Bowie" <jb...@ap...>, "Andy Wells" <aw...@ap...>,
"Tony Weida" <we...@ap...>
Sent: Sunday, February 10, 2008 9:20:57 AM (GMT-0700) America/Denver
Subject: RE: [Apelon-dts-devel] Plans for DTS Server

Quinn,

My answers are inline.

I am copying Jack, Andy and Tony also. They have been the principal
minds behind DTS. 

Abhay

-----Original Message-----
From: H. Quinn Stevenson [mailto:hst...@re...] 
Sent: Tuesday, February 05, 2008 7:02 PM
To: Abhay Sinha
Subject: Re: [Apelon-dts-devel] Plans for DTS Server

Abhay,

I'm glad to hear work is continuing on the project.  I was a little
worried that nothing was really happening since I hadn't seen any
commits to the repository for over 2 months.

I wish I had heard from you last Friday - it could have saved me a lot
of work :-).  The reason is that we had assumed since we were not
getting any response from the forums or mailing lists that the project
wasn't really going anywhere and we were going to have to fork our own
code line to accomplish what we needed.  Based on that assumption, I
pulled down a copy of the source and started cleaning it up so I could
try and figure out what I needed to do.  I've gone through about 75% of
the code, fixing a bunch of warnings (deprecated calls, unused imports,
etc) and formated the files (just using the Netbeans code formatter) to
get a start on a code base.

In the process, I think I found a few bugs, but I only fixed stuff I was
pretty sure was a bug :-).

Since you are planning another release soon, I'm afraid the last few
days worth of work may be wasted.  Don't get me wrong - I have no
problem going through the process again, but I would like to be able to
contribute the work back so I don't have to go through this every time
you make a release (isn't that the way opensource is supposed to work
:-) ).

So now I have a few questions:
1)  How much code have you changed since the last update to the site?
Is the changeset small enough I may be able to salvage some of my work?
[Abhay Sinha] I am going to update the code early next week. There is
not a lot of change.
2)  Do you have any code/style standards?  From what I can tell looking
at the source, the project isn't that far along when it comes to these
types of standards.  As it stands, the code is pretty hard to follow
because of the inconstant formatting and styles.
[Abhay Sinha] We put together a code/style standard, but a lot of code
was put together before that. Lately, most of the developers used the
formatting provided by default by Intellij IDEA.
3)  Is there any documentation on the design - anything that would help
me understand how the system is put together would be very valuable to
me right now.
[Abhay Sinha] We just have user documents.
4)  Is there a linux package now?  I got it running on Linux, but it
took quite a bit of tinkering.  The site says there is a linux package,
but when I went to download it, nothing was there.
[Abhay Sinha] We have a linux package which excludes DTS Editor. We put
the linux package initially, but then found some issues, so removed it.
We are testing it right now. 
5)  Did the ability to traverse into extension namespaces get added to
OntylogClassQuery?
[Abhay Sinha] No
6)  Is NavQuery supposed to be able to return properties?  (It doesn't
seem to right now)
[Abhay Sinha] NavQuery returns properties for the focus concept only.

I'll stop there for now.  If you'd like, I can give you some more
details on what we are trying to do using DTS, but I'm coming up on a
deadline next week, so if you could address the above questions first,
that would be great.  

Hope to hear from you soon :-)

Quinn

----- Original Message -----
From: "Abhay Sinha" <as...@ap...>
To: "H. Quinn Stevenson" <hst...@re...>
Sent: Tuesday, February 5, 2008 12:31:55 PM (GMT-0700) America/Denver
Subject: RE: [Apelon-dts-devel] Plans for DTS Server

Quinn,

Thank you for your interest in Apelon's DTS.

Regarding site activity, we have been working with a number of DTS users
over the past months to complete the beta testing of DTS 3.4.1 (our
first open source release). We expect the final release of this version
to be posted this week. Additionally, there have been a number of new
versions of the DTS Editor plug-ins posted during the past period.

Over the next few months we will be posting new base levels, including
enhanced capabilities in the Modular Classifier. These additions have
all been driven by specific DTS user requests and contributions.

We are always happy to have new contributors to the DTS community. We
welcome your comments and suggestions for new features.

Best regards
Abhay Sinha
On behalf of Apelon

-----Original Message-----
From: ape...@li...
[mailto:ape...@li...] On Behalf Of H.
Quinn Stevenson
Sent: Wednesday, January 23, 2008 9:46 AM
To: DTS Development
Subject: [Apelon-dts-devel] Plans for DTS Server

We are looking at using the DTS Server in our product suite, but the
current implementation doesn't quite fit in out overall architecture.

I looked around the sourceforge site and the wiki, but I couldn't see
any information about future plans/directions for the server.  Also,
when I look at the source repository, it hasn't been updated in quite a
while.

My questions are:

1)  Is the product still being developed?

2)  What are the plans for future work?

3)  Are you looking for contributors to further the project?  (I may be
able to help if the future direction of the product is in line with
where we are going).

Thank You
Quinn

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This SF.net email is sponsored by: Microsoft
Defy all challenges. Microsoft(R) Visual Studio 2008.
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_______________________________________________
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Re: [Apelon-dts-devel] Plans for DTS Server

[Abhay S. <as...@ap...>]

Quinn,

Thank you for your interest in Apelon's DTS.

Regarding site activity, we have been working with a number of DTS users
over the past months to complete the beta testing of DTS 3.4.1 (our
first open source release). We expect the final release of this version
to be posted this week. Additionally, there have been a number of new
versions of the DTS Editor plug-ins posted during the past period.

Over the next few months we will be posting new base levels, including
enhanced capabilities in the Modular Classifier. These additions have
all been driven by specific DTS user requests and contributions.

We are always happy to have new contributors to the DTS community. We
welcome your comments and suggestions for new features.

Best regards
Abhay Sinha
On behalf of Apelon

[Apelon-dts-devel] Plans for DTS Server

[H. Q. S. <hst...@re...>]

We are looking at using the DTS Server in our product suite, but the current implementation doesn't quite fit in out overall architecture.

I looked around the sourceforge site and the wiki, but I couldn't see any information about future plans/directions for the server.  Also, when I look at the source repository, it hasn't been updated in quite a while.

My questions are:

1)  Is the product still being developed?

2)  What are the plans for future work?

3)  Are you looking for contributors to further the project?  (I may be able to help if the future direction of the product is in line with where we are going).

Thank You
Quinn