Re: [apbs-users] zeta potential/electrostatic surface potential

[Nathan B. <nat...@gm...>]

Hello --

We haven't had many requests for this type of analysis before.  However, we
do have utilities that could be of use (
http://www.poissonboltzmann.org/docs/apbs-utilities/).  Both dxmath and
multivalue are programs that allow you to manipulate OpenDX maps with
arithmetic procedures (dxmath) and query the map for potential values and
specific locations in space (multivalue).

Thanks,

Nathan


On Thu, Dec 18, 2014 at 4:13 PM, Estelle Suys <est...@mo...>
wrote:

> Hi,
>
> I've been running APBS and it provided me with a .dx file and I could
> visualize the surface potential and isosurface.
>
> However I'm particularly interested in the numerical value of this PBE
> equation.
>
> Is there any tool or way for me to depict the zeta potential or average
> electrostatic surface potential of my protein?
>
> Regards,
>
> Estelle
>
>
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