The remark lines are supposed to be numbered. It’s trying to parse the line number and failing. As it is just a remark the program will complain and keep going.
I am attaching the PDB file
From: Baker, Nathan [Nathan.Baker@pnnl.gov]
Sent: Friday, September 21, 2012 9:00 AM
To: Abusaud; email@example.com
Subject: Re: [apbs-users] I got error when I converted ssDna to pqr
Can you please send us the PDB file you’re using?
Pacific Northwest National Laboratory
I convert ssDNA (AAA) to pqr and I got the following error.
What does this error mean?
Error parsing line: invalid literal for int() with base 10: 'ori'
<REMARK original generated coordinate pdb file>