I am trying to get the APBS plugin within PyMol to work on an enzyme (pdb = 1jk3).  It has 3 bound Ca++ and 2 Zn++.  I keep getting errors and I don’t know how to handle the metal ions which most certainly effect solvation.  I’m using PyMol 9.9 and APBS plugin v 1.0.0 and I am working in a Win XP environment.




Mark O. Palmier, MS


Biochemistry Department, 117 Schweitzer Hall

University of Missouri, Columbia, MO  65211

phone: (573) 884-6405; FAX: (573) 884-4812