Could you answer the following questions please:

1. Which PDB2PQR web server did you use?

2. What options did you select on the web server page (other than the default options)?

We need to be able to recreate such a problem first, so that we can tell what is going on.



On Wed, Jan 27, 2010 at 11:57 AM, Onur ALTEN <onuralten@hacettepe.edu.tr> wrote:
I have try again  with another computer, but it gives a new error.

--> -->
<type 'exceptions.UnboundLocalError'>
Python 2.6.2: /usr/bin/python
Wed Jan 27 11:51:19 2010

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/pdb2pqr/querystatus.cgi in ()
  546         from ZSI.TC import String
  547     else:
  548         have_opal = False
  550     mainCGI()
mainCGI = <function mainCGI at 0x1398320>
 /var/www/html/pdb2pqr/querystatus.cgi in mainCGI()
  327         timefile.close()
  328     if progress == "running" or (have_opal and progress != "version_mismatch"):
  329         runtime = time.time()-starttime
  330     elif progress == "complete":
  331         endtimefile = open('%s%s%s/%s_end_time' % (INSTALLDIR, TMPDIR, form["jobid"].value, form["calctype"].value))
runtime undefined, global time = <module 'time' from '/usr/lib64/python2.6/lib-dynload/timemodule.so'>, time.time = <built-in function time>, starttime undefined

<type 'exceptions.UnboundLocalError'>: local variable 'starttime' referenced before assignment
      args = ("local variable 'starttime' referenced before assignment",)
      message = "local variable 'starttime' referenced before assignment"

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Yong Huang, D.Sc.

Center for Computational Biology
Washington University School of Medicine