Hi Marius --

Sourceforge.net just informed me that this mailing list search bug has been fixed.  Please let me know if you have any other problems.

Thanks,

Nathan

On Wed, Jan 28, 2009 at 8:50 PM, Nathan Baker <baker@biochem.wustl.edu> wrote:
Hello --

AFAIK, there is a possibility to read a pdb file in apbs, and an additional parameter file that defines the charge and vdw parameters. I was wondering is someone has already a file for the OPLS-AA force field.

One of the reasons we don't have van der Waals parameters for OPLS distributed with APBS is because we currently only support Lorentz-Berthelot mixing rules.  We need to add the geometric sigma mixing for OPLS in the future and support switching between rules for different force fields.
 
Also I was wondering how to search the mail archive in an efficient way. I tried the Sourceforge search function, but I always get "Time out waiting for response...". Isn't the list mirrored somewhere else, something like http://www.mail-archive.com?

The mailing lists aren't mirrored anywhere.  I think SF.net is having some intermittent problems with their search; it's worked for me in the past but is not working right now.  I've filed a bug with SF.net; sorry for the inconvenience.

Thanks,

Nathan
 

Thank you
Marius

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--
Associate Professor, Dept. of Biochemistry and Molecular Biophysics
Center for Computational Biology, Washington University in St. Louis
Web: http://cholla.wustl.edu/



--
Associate Professor, Dept. of Biochemistry and Molecular Biophysics
Center for Computational Biology, Washington University in St. Louis
Web: http://cholla.wustl.edu/